Gene

KWMTBOMO11310

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr19(+):2896725-2898229      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 3.707

CDS

ATGGAAAACAGTCGACGTCGCCCAAAACACGTCATCTCGGATCCTTCCGATCCACTAACGGTGCTTCTAGGAACTTGGAAATTGGGCAAGGTTATCGCCTTGCCCAAACCCGGCAAGGACAGGAGAAATCCCTCCAGTTACCGTCCGATTACCTTGCTGTCGCACGTGGGCAAGTTGTTCGAGCGGCTGCTGCTGAGAAGGGTGTCGCCGCACATCCTTCTTAGACCCGAGCAATTCGGGTTTCGTAGCGGTCACTCGACAACGCTGCAATTGGTCCGCGTTATGCATCACTTGGCGGATCGGTCCAACGCGCGCCAGTACGCGGCCGCAGTCTTTCTCGATATCGAGAAGGCCTTCGACCGTGTCTGGCATGCGGGACTGGTTCACAAGTTGTTGCAGAACACGGACCTCCAGCACGCCTACGTGCGACTGCTGGGGTCGTACCTGGAGGGAAGATCCTTCCTTGTCGCGGTCGAGGGCGCCAAGTCGTCGGTGCGCCCAGTCACGGCCGGAGTTCCTCAGGGGAGTGTCCTGGCACCACTCCTCTACGCTCTCTATACCAACGACATTCCCACGCTTGAGGGCAACCTCCAAGCGTGGGAAGCCGACGTGAAGTTGGCGCTGTTTGCCGACGACAGCGCCTACTTCGCGTCATCCAACTTCCCCTCTGCGGCCATTTCGAGGATGCAGAGGCTATTGGACTTACTGCCCCAGTGGCTGGACCGATGGAGGGTCGCGGTCAACGTGGGGAAGACTGCGGCTATCCTCTTCGGTCCGGTCCGCACAACAGTCGTCCCGGGACAGCTCAGTCTCCGTGGCGCTAATGTCGAGTTTAGATCCAGCGTCCGGTACTTGGGGGTCGATATCGACCGGAGTTTGAGGATGACCGCCCACGCCATGTCGGCGTTGGCGGCCGCTCGTTACGCGAGATTCCTCCTCCGGCCGGTGTTGGCCTCCAGGTTGCCGGTCAGGACTAAGCTCGGCATTTATAAGACGTATGTCCGTTCCCGTATCACGTACGCAGCTGCGGCCTGGTATCACCTCATCCCGCAGGGTATGCGGGAGAGGTTACAGGTCCAGCAAAATCTGGCTCTTCGCACGATAGTCGGAGCAGGGCGTTACGTCAGAAATGCCGTAATCGCCCAGGATCTGGATGTGGAGTCGCTCGAGGAGTTCATCCGGAGGCTAGCTCGTAATCTTTACGAGCGGGCTGACGGTGGACCCCACGAGCATCTCCACAATTTAGCTCCCTTGCACGCTAGACCACCTGATGGTCTGGCGCTACCAAGGGAGCTACTGGAACCCCCTTCTATGGTAAGATAG

Protein

MENSRRRPKHVISDPSDPLTVLLGTWKLGKVIALPKPGKDRRNPSSYRPITLLSHVGKLFERLLLRRVSPHILLRPEQFGFRSGHSTTLQLVRVMHHLADRSNARQYAAAVFLDIEKAFDRVWHAGLVHKLLQNTDLQHAYVRLLGSYLEGRSFLVAVEGAKSSVRPVTAGVPQGSVLAPLLYALYTNDIPTLEGNLQAWEADVKLALFADDSAYFASSNFPSAAISRMQRLLDLLPQWLDRWRVAVNVGKTAAILFGPVRTTVVPGQLSLRGANVEFRSSVRYLGVDIDRSLRMTAHAMSALAAARYARFLLRPVLASRLPVRTKLGIYKTYVRSRITYAAAAWYHLIPQGMRERLQVQQNLALRTIVGAGRYVRNAVIAQDLDVESLEEFIRRLARNLYERADGGPHEHLHNLAPLHARPPDGLALPRELLEPPSMVR

Uniprot

A0A3S2NJ07   A0A2A4JQF8   J9LF86   A0A2S2NJB5   J9KPF1   X1X928   + More
A0A2S2RAN7   J9L876   X1XGU0   J9LFC9   X1WN18   X1WZH0   A0A087U2S8   J9KCZ4   A0A2J7QEZ4   A0A1Y1KUU7   A0A2J7Q5G9   X1WNI2   J9LC21   A0A2J7PMP9   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7RS77   A0A2J7RM10   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RB54   V5GNF3   A0A2J7Q059   A0A2J7RPU2   A0A2J7QUJ9   A0A2J7Q0Q6   A0A2J7QFL0   A0A2S2Q823   A0A087T1W0   A0A2J7R2E1   A0A2J7R6U1   X1WQR0   J9KKL3   A0A2J7RKP3   A0A2J7Q6J2   A0A2J7Q1Y9   A0A0N0PA09   J9LF85   A0A2J7QY69   A0A2J7PU96   A0A2J7PBY3   A0A2J7PDS9   J9KVX5   J9KEU4   A0A2J7QR37   X1WWC4   J9JS95   A0A087TV70   A0A0N1PFV1   A0A2S2PR14   A0A2A4K8E7   A0A1Y1NA23   X1WMU5   A0A2J7Q2R1   X1WLB2   J9LR29   V5GNJ2   A0A0A9YJ00   A0A0A9Z4E6   Q9XXW0   A0A0A9YU04   A0A0A9YN51   A0A139WA11   A0A2A4K918   A0A182GA28   A0A139W8G9   A0A2J7RRU8   A0A224XF24   A0A087U3E2   Q9BPQ0   X1WXU3   A0A1Y1LKN6   A0A2H8TV33   A0A2S2QTZ8   A0A087T2T6   A0A2S2PX53   A0A1Y1JWM7   A0A2J7QQP1   A0A0L0CBP5   A0A1Y1JXT3   O76197   A0A2J7R579   A0A2J7R4B1   A0A2J7RS81   Q93137   A0A2S2QV09   A0A2L2YNL2   A0A2S2QJM7   A0A023EZE6   A0A2J7QPI2   A0A2J7R8R8   A0A0A9Y7Q6   J9KLQ2   A0A2J7PDM0  

Pubmed

28004739    26354079    25401762    10333566    18362917    19820115    + More
26483478    26108605    8934517    26561354    25474469   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02017815    GGMR01004661    + More
MBY17280.1    ABLF02041767    ABLF02066620    GGMS01017914    MBY87117.1    ABLF02033522    ABLF02055645    ABLF02023911    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02034467    KK117880    KFM71667.1    ABLF02008463    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    GEZM01074951    JAV64378.1    NEVH01017559    PNF23833.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NEVH01023961    PNF17613.1    NEVH01003017    PNF40781.1    NEVH01018383    PNF23463.1    NEVH01000280    PNF43672.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01005938    PNF38077.1    GALX01005359    JAB63107.1    NEVH01020071    PNF21969.1    NEVH01001355    PNF42855.1    NEVH01010546    PNF32261.1    NEVH01019964    PNF22161.1    NEVH01014858    PNF27387.1    GGMS01004685    MBY73888.1    KK113014    KFM59099.1    NEVH01007838    PNF34986.1    NEVH01006754    PNF36554.1    ABLF02050434    ABLF02064867    ABLF02029306    ABLF02029314    ABLF02060138    NEVH01002716    PNF41415.1    NEVH01017470    PNF24199.1    NEVH01019376    PNF22596.1    KQ459259    KPJ02068.1    ABLF02017813    NEVH01009134    PNF33528.1    NEVH01021205    PNF19912.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1    ABLF02010251    ABLF02035981    ABLF02040650    ABLF02040651    ABLF02056776    NEVH01011985    PNF31054.1    ABLF02003961    ABLF02059872    ABLF02028535    ABLF02028545    KK116883    KFM69009.1    KQ459265    KPJ02064.1    GGMR01019198    MBY31817.1    NWSH01000032    PCG80497.1    GEZM01008457    JAV94772.1    ABLF02014862    ABLF02014866    ABLF02061908    NEVH01019080    PNF22876.1    ABLF02042518    ABLF02057746    ABLF02025082    ABLF02039175    ABLF02041809    GALX01005299    JAB63167.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    AB018558    BAA76304.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    KQ971729    KYB24751.1    PCG80496.1    JXUM01155316    KQ572171    KXJ68070.1    KQ973342    KXZ75569.1    NEVH01000598    PNF43535.1    GFTR01008038    JAW08388.1    KK117974    KFM71881.1    AB055391    BAB21761.1    ABLF02008933    GEZM01053022    JAV74219.1    GFXV01005866    MBW17671.1    GGMS01012005    MBY81208.1    KK113137    KFM59425.1    GGMS01000737    MBY69940.1    GEZM01101506    JAV52621.1    NEVH01012084    PNF30905.1    JRES01000644    KNC29657.1    GEZM01101509    JAV52620.1    AF012049    AAC24972.1    NEVH01007393    PNF35987.1    NEVH01007578    PNF35646.1    NEVH01000269    PNF43694.1    U07847    AAA17752.1    GGMS01012393    MBY81596.1    IAAA01035747    LAA09607.1    GGMS01008766    MBY77969.1    GBBI01004571    JAC14141.1    NEVH01012089    PNF30491.1    NEVH01006721    PNF37225.1    GBHO01016496    JAG27108.1    ABLF02030319    ABLF02030320    NEVH01026386    PNF14434.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000054359    UP000235965    UP000053268    + More
UP000007266    UP000069940    UP000249989    UP000037069   

PRIDE

Q9XXW0    Q9BPQ0    Q93137   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF03184   DDE_1
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR004875   DDE_SF_endonuclease_dom       
IPR036875   Znf_CCHC_sf       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   J9LF86   A0A2S2NJB5   J9KPF1   X1X928   + More
A0A2S2RAN7   J9L876   X1XGU0   J9LFC9   X1WN18   X1WZH0   A0A087U2S8   J9KCZ4   A0A2J7QEZ4   A0A1Y1KUU7   A0A2J7Q5G9   X1WNI2   J9LC21   A0A2J7PMP9   A0A2J7RIW7   A0A2J7Q4F7   A0A2J7RS77   A0A2J7RM10   A0A2J7PMP6   A0A2J7R4B7   A0A2J7RB54   V5GNF3   A0A2J7Q059   A0A2J7RPU2   A0A2J7QUJ9   A0A2J7Q0Q6   A0A2J7QFL0   A0A2S2Q823   A0A087T1W0   A0A2J7R2E1   A0A2J7R6U1   X1WQR0   J9KKL3   A0A2J7RKP3   A0A2J7Q6J2   A0A2J7Q1Y9   A0A0N0PA09   J9LF85   A0A2J7QY69   A0A2J7PU96   A0A2J7PBY3   A0A2J7PDS9   J9KVX5   J9KEU4   A0A2J7QR37   X1WWC4   J9JS95   A0A087TV70   A0A0N1PFV1   A0A2S2PR14   A0A2A4K8E7   A0A1Y1NA23   X1WMU5   A0A2J7Q2R1   X1WLB2   J9LR29   V5GNJ2   A0A0A9YJ00   A0A0A9Z4E6   Q9XXW0   A0A0A9YU04   A0A0A9YN51   A0A139WA11   A0A2A4K918   A0A182GA28   A0A139W8G9   A0A2J7RRU8   A0A224XF24   A0A087U3E2   Q9BPQ0   X1WXU3   A0A1Y1LKN6   A0A2H8TV33   A0A2S2QTZ8   A0A087T2T6   A0A2S2PX53   A0A1Y1JWM7   A0A2J7QQP1   A0A0L0CBP5   A0A1Y1JXT3   O76197   A0A2J7R579   A0A2J7R4B1   A0A2J7RS81   Q93137   A0A2S2QV09   A0A2L2YNL2   A0A2S2QJM7   A0A023EZE6   A0A2J7QPI2   A0A2J7R8R8   A0A0A9Y7Q6   J9KLQ2   A0A2J7PDM0  

PDB

6AR3     E-value=1.87588e-05,     Score=115

KEGG

105842439    no KO assigned | (RefSeq) uncharacterized LOC105842439

GO

GO:0003964   GO:0003676   GO:0008270   GO:0004519   GO:0016021  

Length:

440

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12713

Exp number, first 60 AAs:

0.00419

Total prob of N-in:

0.03726

outside

1  -  440

 

 

Pi

286.663152

Theta

165.756589

Tajima's D

4.296406

CLR

0.5129

CSRT

0.99970001499925

Interpretation

Uncertain