Gene

KWMTBOMO11305

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr19(+):2753065-2754566      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.811 PlasmaMembrane   Reliability : 1.195

CDS

ATGGAGCGAATTATAAATATACAACTCCTGAAGTATCTTGGAGATCGCCAGCTGATCAGTGACCGACAGTACGGTTTCCGTCACGGTCGCTCAGCTGGCGATCTTCTTGTATACCTTACTCACAGGTGGGCTGAAGCCTTGGAGAGCAAGGGCGAGGCTCTTGCTGTGAGCCTTGATATCGCGAAGGCCTTCGACAGGGTCTGGCATAGGGCACTTCTGTCGAAGCTACCATCTTACGGAATCCCCGAGGGTCTCTGCAAGTGGATCGCTAGCTTTTTGGATGGGCGGAGCATCACGGTCGTTGTAGACGGTGACTGTTCTGATACCATGACCATTAACGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATAGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGAAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCAAATGGTGTGAATTGAACTTGGTTCAATTCAACCCGTTAAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGAGAGTATTGGGATACTTGGGGTCGACATTTCGAGCGATGTCCAGTTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTACTTCACGCCTGGACAAAGGCTTCTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGGATTGTCGATAATCCCAGTCTCACGGATCGTTTGGAACCTCTGGGTCTGCGGAGGGACTTCGGTTCTCTCTGTATTTTATACCGTATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCATCGGAGTAGAGTTCATCCGTACTACCTGGAGCCACTGCGATCATCTACAGTGCGTTTCCAGAGATCTTTTTTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTCAAACGAGGCTTGTGGAGAGTATTAAGCGGTAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCAACGGTAA

Protein

MERIINIQLLKYLGDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDMLSIDSMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSKWCELNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSESIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPSLTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGQR

Cofactor

pyridoxal 5'-phosphate

Uniprot

Q6UV17   A0A3S2NMS5   A0A3S2NTH0   A0A3S2LP03   A0A3S2LQP1   A0A3S2L424   + More
A0A3D5S1K1   A0A0P4VXU0   A0A0P4VTV9   T2M4I6   A0A1E1XGQ7   A0A147BNQ9   A0A0P4VVV8   A0A131Y4I8   A0A1G4M3N1   A0A1G4M5I2   A0A1E1XNL1   A0A0P4VX79   A0A2H9T2R7   A0A1E1XPS6   A0A210QQ08  

Pubmed

30148503    24065732    28503490    29652888    29209593    29150518    + More
28812685   

EMBL

AY359886    AAQ57129.1    RSAL01000002    RVE54942.1    RSAL01000090    RVE48098.1    + More
RSAL01002067    RVE40593.1    RSAL01000422    RVE41792.1    RSAL01000171    RVE45150.1    DPOC01000269    HCX22453.1    GDRN01105059    JAI57791.1    GDRN01111334    JAI56796.1    HAAD01000593    CDG66825.1    GFAC01000919    JAT98269.1    GEGO01003312    JAR92092.1    GDRN01111277    JAI56804.1    GEFM01002394    JAP73402.1    FLMD02000154    SCV66010.1    FLMD02000280    SCV66640.1    GFAA01002514    JAU00921.1    GDRN01111326    JAI56798.1    NSIT01000538    PJE77518.1    GFAA01002385    JAU01050.1    NEDP02002425    OWF50811.1   

Proteomes

UP000283053    UP000242188   

PRIDE

Q6UV17   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF04939   RRS1
PF01585   G-patch
PF00282   Pyridoxal_deC
PF02460   Patched
PF00096   zf-C2H2

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR007023   Ribosom_reg       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR034653   SPF45_RRM       
IPR003954   RRM_dom_euk       
IPR000467   G_patch_dom       
IPR040052   RBM17       
IPR035979   RBD_domain_sf       
IPR015424   PyrdxlP-dep_Trfase       
IPR002129   PyrdxlP-dep_de-COase       
IPR021115   Pyridoxal-P_BS       
IPR015421   PyrdxlP-dep_Trfase_major       
IPR015422   PyrdxlP-dep_Trfase_dom1       
IPR010977   Aromatic_deC       
IPR030223   Dispatched       
IPR003392   Ptc/Disp       
IPR000731   SSD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF54928   SSF54928       
SSF53383   SSF53383       
SSF57667   SSF57667       

Gene 3D

3.60.10.10     3.30.70.330     3.40.640.10     3.90.1150.10    

CDD

cd12647  RRM_UHM_SPF45

ProteinModelPortal

Q6UV17   A0A3S2NMS5   A0A3S2NTH0   A0A3S2LP03   A0A3S2LQP1   A0A3S2L424   + More
A0A3D5S1K1   A0A0P4VXU0   A0A0P4VTV9   T2M4I6   A0A1E1XGQ7   A0A147BNQ9   A0A0P4VVV8   A0A131Y4I8   A0A1G4M3N1   A0A1G4M5I2   A0A1E1XNL1   A0A0P4VX79   A0A2H9T2R7   A0A1E1XPS6   A0A210QQ08  

PDB

6AR3     E-value=0.000116885,     Score=109

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0003723   GO:0016021   GO:0003676  

PANTHER

PTHR17602   PTHR13288   PTHR45951:SF3  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03676

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00504

outside

1  -  438

 

 

Pi

5.876815

Theta

47.929689

Tajima's D

1.972249

CLR

0.617701

CSRT

0.881905904704765

Interpretation

Uncertain