SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11304
Pre Gene Modal
BGIBMGA001988
Annotation
PREDICTED:_transient_receptor_potential_cation_channel_trpm_isoform_X1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.635
 

Sequence

CDS
ATGTTGTACGGTGAAGTATTCGCTGGCGATATAGATCCTCCTTGCGGGAAGGAGATCGGCGACCGGAAATGCGTCACCGGAAGATGGATCACGCCCATCGCCATGACAGTGTACCTGCTCATCGCCAATATATTACTGATCAATCTCCTAATTGCCGTTTTTAATAATATATTCAACGAAGTCAATGAAGTCTCGCATCAGGTGTGGATGTTCCAAAGGTTCACAGTGGTCATGGAGTATGAACAGAAGCCAGTTCTGCCGCCACCGCTGATCATCTTCTGCCACATCTACGCCGTTGGCAAGTGGGTGACCAGAAACGTCTCGCACAAGAGATTCCAATACGACAACGGACTGAAGCTGTTCTTGGAGAAAGAAGACATGGAGAGGCTTTATGACTTCGAAGAGGAATGCGTGGAGGGATACTTTAGGGAACAAGAAATAAAATTATCGAATTCAATAGAGGAGAGAGTTAGGAATACAACAGATAGGGTAGAACATATAACGACCAAAATGGAAGACTTGAATCAAAAGGCAAATTGCCAAATACAATCGATGCAGAGCGTTGAATTTAGGTTAAGAAAGCTCGAAGATATAGCGGAGCAGACGATGAGCCACCTGGCGGTGATACACAGGTTCATGGCGACTCATCCTTCGCTGGTCAACCGGGGGTCCACAGACACTCTCGGACCGCCGCCCCCAAGCTTCCAGGCCGGGGGGAATAGACTTAGAACTGCCAGTGATCGCTCCGAGGTACTATCAGACAGCGACACTGGTGCTCGCTTCGCCGTGCGCCCGGTACAAGAGGAGGACGAACAACCCTCCTGCCACTCTGACGTAAGCCACTCCGACACGTTAAAACTCCGCGACCGTTGTCTAAACAATCGTTCCTTTAAATCGCGTCTATGGAAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAATACACTTTATTGCACACCAAAACACAATTTACATTCAAAAAACAATCAAAAAAGCAGATACATTTGTTAGGTGAGGACGAGCTGCCGCAGTCGGGAACAGAGGCTATATGTGGAGAAGCCAAGGAGCCGGAAGCCGACTCGATATCCACTTCGTCCGGAGGGAGCGCAGCCGGTCCTGACGTCACGGTGGTACGGCAGCAACCAGCCATAATGCCGGCCAGACAACGATCATCGGATAGCAACAGAACCGAACCCAGTGATGAGAAGAAAGTGGCATCATCGACAGACGACGCTTTCCTCCCAGAAGTCCGCGAAATGCCTACAGACCTGCACAGCTTGAGACCTCGGACCACATCGGGCGGGACAAGACGTACAGCTAACACCAGAAGGCGCTCCGAAGGAGGCAACGACTGCGGCATGGGCCCCTACTCCTCACAACACTTGGCTCCGAGGAGACAGCACAGTCAAACGCATTCTGAACCCGACAACTCTGCAGTAGACGCTGGTTCTGTGCACAATTCCGTAACAGGTCCTCAATCGGGGTGGGAGGGCGCGGGGGCCACGGGGGCCGCGGGGGGGACAGGGAGGGCTCGCGTGGGGGGCGCGCCCCGCTCCCTGCTGCTCGCCATGCACGAGTACACGAGCATCACGGACGAACTGGAAACTGTTTATGGACTCTTCTCACCGCCGCACACGCCGAGAACACCGATAACTTCACGTCTGCTGTCCCCCGCCCGCGCGGCCTCTCCCTCCGTCCGTCGACGTCACGCCAGCGAGATGTCCAACCCCGAGTTCGCACTCTTCATGGAGAAGGAGCACCTTCGAGGAGCCGAAGAAGACGACTACATCATCATGGAGAACCTGATCCAAAGGCGCCTAGAAATGGGGTCTGTACTGGACAGATACGAGGAGGAGGAGGGCGGGGAGGGGGCGGGCGCGGGGGGAGCGATCAGCATCAGCGTCTGCGTCAACACCAGCGAGGAGCAACCACAGAGTTCGAGTCTCCTCACCGTGACAGACAGACGTCTACCGCATCAGAGGCACTCGCTAAGGAGATCTTCAGCTGTCGACAGCCGGGAGCTTCCGTCGCCCCTGCAGCCTCTGCTCGGAGATGATGCTTGTTGCGAAGTCTTACTGCCGGTTCCGAGACAGCCTTCGGGAGATACGAACGCATCTAGCGACCTCTCGCTCTCACACATGGTGAGCGAGAATCTCCCGCCGCGGCCCTCCATAGTGCTCGACTCGTCTCAGCTCCCGCGTCAAAGGTCCGCGGAGCAACAGCAGCCGCAGCCTCCGGGACCGTCCAGACCCGAGACAATGTGCTAA
Protein
MLYGEVFAGDIDPPCGKEIGDRKCVTGRWITPIAMTVYLLIANILLINLLIAVFNNIFNEVNEVSHQVWMFQRFTVVMEYEQKPVLPPPLIIFCHIYAVGKWVTRNVSHKRFQYDNGLKLFLEKEDMERLYDFEEECVEGYFREQEIKLSNSIEERVRNTTDRVEHITTKMEDLNQKANCQIQSMQSVEFRLRKLEDIAEQTMSHLAVIHRFMATHPSLVNRGSTDTLGPPPPSFQAGGNRLRTASDRSEVLSDSDTGARFAVRPVQEEDEQPSCHSDVSHSDTLKLRDRCLNNRSFKSRLWKRERERERERERERERERESERERARERERERERERESERERARERERERESERERERERARERERERESERERARERERERERERERESERERARERGERESERERARERERERESERERARERERESERERERERESERERERERESERERARERERERESERERARERERESERERERERERERERESERERERERESERERESERERARERERERERERERERERERERERARERERERERERERARERERERERERERERARERERERESERERERERESERERARERERARERERERERERERERAERERERARERERERERERERERARERERERERERERERESEREREREREREREYTLLHTKTQFTFKKQSKKQIHLLGEDELPQSGTEAICGEAKEPEADSISTSSGGSAAGPDVTVVRQQPAIMPARQRSSDSNRTEPSDEKKVASSTDDAFLPEVREMPTDLHSLRPRTTSGGTRRTANTRRRSEGGNDCGMGPYSSQHLAPRRQHSQTHSEPDNSAVDAGSVHNSVTGPQSGWEGAGATGAAGGTGRARVGGAPRSLLLAMHEYTSITDELETVYGLFSPPHTPRTPITSRLLSPARAASPSVRRRHASEMSNPEFALFMEKEHLRGAEEDDYIIMENLIQRRLEMGSVLDRYEEEEGGEGAGAGGAISISVCVNTSEEQPQSSSLLTVTDRRLPHQRHSLRRSSAVDSRELPSPLQPLLGDDACCEVLLPVPRQPSGDTNASSDLSLSHMVSENLPPRPSIVLDSSQLPRQRSAEQQQPQPPGPSRPETMC

Summary

Uniprot
ProteinModelPortal
PDB
6BWF     E-value=2.34989e-30,     Score=334

Ontologies

Topology

Length:
1108
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
24.28702
Exp number, first 60 AAs:
22.16046
Total prob of N-in:
0.87363
POSSIBLE N-term signal
sequence
inside
1  -  28
TMhelix
29  -  51
outside
52  -  1108
 
 

Population Genetic Test Statistics

Pi
210.471855
Theta
171.070008
Tajima's D
0.717171
CLR
0.412679
CSRT
0.574821258937053
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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