Silkworm Genome Informatics Database

Gene

KWMTBOMO11304

Pre Gene Modal

BGIBMGA001988

Annotation

PREDICTED:_transient_receptor_potential_cation_channel_trpm_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr19(-):2730032-2751394 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.635

CDS

ATGTTGTACGGTGAAGTATTCGCTGGCGATATAGATCCTCCTTGCGGGAAGGAGATCGGCGACCGGAAATGCGTCACCGGAAGATGGATCACGCCCATCGCCATGACAGTGTACCTGCTCATCGCCAATATATTACTGATCAATCTCCTAATTGCCGTTTTTAATAATATATTCAACGAAGTCAATGAAGTCTCGCATCAGGTGTGGATGTTCCAAAGGTTCACAGTGGTCATGGAGTATGAACAGAAGCCAGTTCTGCCGCCACCGCTGATCATCTTCTGCCACATCTACGCCGTTGGCAAGTGGGTGACCAGAAACGTCTCGCACAAGAGATTCCAATACGACAACGGACTGAAGCTGTTCTTGGAGAAAGAAGACATGGAGAGGCTTTATGACTTCGAAGAGGAATGCGTGGAGGGATACTTTAGGGAACAAGAAATAAAATTATCGAATTCAATAGAGGAGAGAGTTAGGAATACAACAGATAGGGTAGAACATATAACGACCAAAATGGAAGACTTGAATCAAAAGGCAAATTGCCAAATACAATCGATGCAGAGCGTTGAATTTAGGTTAAGAAAGCTCGAAGATATAGCGGAGCAGACGATGAGCCACCTGGCGGTGATACACAGGTTCATGGCGACTCATCCTTCGCTGGTCAACCGGGGGTCCACAGACACTCTCGGACCGCCGCCCCCAAGCTTCCAGGCCGGGGGGAATAGACTTAGAACTGCCAGTGATCGCTCCGAGGTACTATCAGACAGCGACACTGGTGCTCGCTTCGCCGTGCGCCCGGTACAAGAGGAGGACGAACAACCCTCCTGCCACTCTGACGTAAGCCACTCCGACACGTTAAAACTCCGCGACCGTTGTCTAAACAATCGTTCCTTTAAATCGCGTCTATGGAAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAATACACTTTATTGCACACCAAAACACAATTTACATTCAAAAAACAATCAAAAAAGCAGATACATTTGTTAGGTGAGGACGAGCTGCCGCAGTCGGGAACAGAGGCTATATGTGGAGAAGCCAAGGAGCCGGAAGCCGACTCGATATCCACTTCGTCCGGAGGGAGCGCAGCCGGTCCTGACGTCACGGTGGTACGGCAGCAACCAGCCATAATGCCGGCCAGACAACGATCATCGGATAGCAACAGAACCGAACCCAGTGATGAGAAGAAAGTGGCATCATCGACAGACGACGCTTTCCTCCCAGAAGTCCGCGAAATGCCTACAGACCTGCACAGCTTGAGACCTCGGACCACATCGGGCGGGACAAGACGTACAGCTAACACCAGAAGGCGCTCCGAAGGAGGCAACGACTGCGGCATGGGCCCCTACTCCTCACAACACTTGGCTCCGAGGAGACAGCACAGTCAAACGCATTCTGAACCCGACAACTCTGCAGTAGACGCTGGTTCTGTGCACAATTCCGTAACAGGTCCTCAATCGGGGTGGGAGGGCGCGGGGGCCACGGGGGCCGCGGGGGGGACAGGGAGGGCTCGCGTGGGGGGCGCGCCCCGCTCCCTGCTGCTCGCCATGCACGAGTACACGAGCATCACGGACGAACTGGAAACTGTTTATGGACTCTTCTCACCGCCGCACACGCCGAGAACACCGATAACTTCACGTCTGCTGTCCCCCGCCCGCGCGGCCTCTCCCTCCGTCCGTCGACGTCACGCCAGCGAGATGTCCAACCCCGAGTTCGCACTCTTCATGGAGAAGGAGCACCTTCGAGGAGCCGAAGAAGACGACTACATCATCATGGAGAACCTGATCCAAAGGCGCCTAGAAATGGGGTCTGTACTGGACAGATACGAGGAGGAGGAGGGCGGGGAGGGGGCGGGCGCGGGGGGAGCGATCAGCATCAGCGTCTGCGTCAACACCAGCGAGGAGCAACCACAGAGTTCGAGTCTCCTCACCGTGACAGACAGACGTCTACCGCATCAGAGGCACTCGCTAAGGAGATCTTCAGCTGTCGACAGCCGGGAGCTTCCGTCGCCCCTGCAGCCTCTGCTCGGAGATGATGCTTGTTGCGAAGTCTTACTGCCGGTTCCGAGACAGCCTTCGGGAGATACGAACGCATCTAGCGACCTCTCGCTCTCACACATGGTGAGCGAGAATCTCCCGCCGCGGCCCTCCATAGTGCTCGACTCGTCTCAGCTCCCGCGTCAAAGGTCCGCGGAGCAACAGCAGCCGCAGCCTCCGGGACCGTCCAGACCCGAGACAATGTGCTAA

Protein

MLYGEVFAGDIDPPCGKEIGDRKCVTGRWITPIAMTVYLLIANILLINLLIAVFNNIFNEVNEVSHQVWMFQRFTVVMEYEQKPVLPPPLIIFCHIYAVGKWVTRNVSHKRFQYDNGLKLFLEKEDMERLYDFEEECVEGYFREQEIKLSNSIEERVRNTTDRVEHITTKMEDLNQKANCQIQSMQSVEFRLRKLEDIAEQTMSHLAVIHRFMATHPSLVNRGSTDTLGPPPPSFQAGGNRLRTASDRSEVLSDSDTGARFAVRPVQEEDEQPSCHSDVSHSDTLKLRDRCLNNRSFKSRLWKRERERERERERERERERESERERARERERERERERESERERARERERERESERERERERARERERERESERERARERERERERERERESERERARERGERESERERARERERERESERERARERERESERERERERESERERERERESERERARERERERESERERARERERESERERERERERERERESERERERERESERERESERERARERERERERERERERERERERERARERERERERERERARERERERERERERERARERERERESERERERERESERERARERERARERERERERERERERAERERERARERERERERERERERARERERERERERERERESEREREREREREREYTLLHTKTQFTFKKQSKKQIHLLGEDELPQSGTEAICGEAKEPEADSISTSSGGSAAGPDVTVVRQQPAIMPARQRSSDSNRTEPSDEKKVASSTDDAFLPEVREMPTDLHSLRPRTTSGGTRRTANTRRRSEGGNDCGMGPYSSQHLAPRRQHSQTHSEPDNSAVDAGSVHNSVTGPQSGWEGAGATGAAGGTGRARVGGAPRSLLLAMHEYTSITDELETVYGLFSPPHTPRTPITSRLLSPARAASPSVRRRHASEMSNPEFALFMEKEHLRGAEEDDYIIMENLIQRRLEMGSVLDRYEEEEGGEGAGAGGAISISVCVNTSEEQPQSSSLLTVTDRRLPHQRHSLRRSSAVDSRELPSPLQPLLGDDACCEVLLPVPRQPSGDTNASSDLSLSHMVSENLPPRPSIVLDSSQLPRQRSAEQQQPQPPGPSRPETMC

Uniprot

NA

ProteinModelPortal

NA

PDB

6BWF E-value=2.34989e-30, Score=334

KEGG

101738592 K04978 transient receptor potential cation channel subfamily M member 3 | (RefSeq) transient recepto

GO

GO:0051262 GO:0005576 GO:0007155 GO:0005515 GO:0042555 GO:0006260 GO:0006811 GO:0005622 GO:0006810 GO:0003824

Length:

1108

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

24.28702

Exp number, first 60 AAs:

22.16046

Total prob of N-in:

0.87363

POSSIBLE N-term signal

sequence

inside

1 - 28

TMhelix

29 - 51

outside

52 - 1108

Pi

210.471855

Theta

171.070008

Tajima's D

0.717171

CLR

0.412679

CSRT

0.574821258937053

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree