Gene

KWMTBOMO11302  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA001836

Annotation

PREDICTED:_cartilage_oligomeric_matrix_protein_[Papilio_machaon]

Location

Bomo_Chr19(+):2703815-2722558      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 2.144 Nuclear   Reliability : 1.708

CDS

ATGTCCGGGACTTACGACCTTCTGGATATACTGAGGGACCAGAAGACGAAATTGTATCACGAAGAAAACGCTCCAGTCGAAATATACGGCAGCGAAAAAGCAGCGGTTGAATCTTTGAGTTGTGCAAAAGACAACATCAGACCTCCAACTCTACTGAGACTGGACGAACCTGAATCGGACGTAGAAGAAGTCCAAGAATTCAGAAAGAAGGAAGCTCTCATGGACAGAGAGGAAGAAATGCAAGGAGATGATGCTACTAATTATTTGGAAGCTAACGGTATTCTGCCGCAACCTTCAAGAGGGGATATACCTCAGTCTGCCATTGAATCGTGTGATGATGAAGTCATCCGTCAACTGACCCTACTGCGTCAGATCATCGAGCACTTGCGCCGGGAGGTCGGGGATCAGAAGCACACAATAGACAGCCTAAGGTCTCAACTCCACCAGTGCTGCAACAGAGTACCCGTCACCCCGCCCCCCGTGGAGAGATGCTCCGGATCCTCATGCTACCCTGGGGTCGAATGCCGGAACACTGTCGCGGGGTTCGAGTGTGGGTCGTGTCCGCGCGGCATGGAGGGCGACGGCCGGAGGTGCAGACCCGTACTGTGTAACAGACGCCCATGCTCACAAGGGGAGAGGTGCGTCGATACGGACCAAGGTTTCCGGTGCGAGAGATGCCCAGGGTCACAGACGAGTGATGGCCAGACCTGCAGGACTGCGTGTAGCGCTAACCCTTGCTTTGGAGGACGAGTACCGTGCCAGGACTTACCAGACGGCAGATACCAATGCGGCAAGTGCCCTTCTGGGTTCCACGGGAATGGAGTCGAGTGCTATAGGATATCCTGCAGAGCAAACACGTGCTTTCAAGGTGTGAGCTGCGAGGAGACCCAATATGGTCCTAAATGCGGGTCCTGTCCCACTGGGTACGTGGGAGACGGTCGGCAGTGCCAGCACGTGTGTGACGCTCAGAAGCCCTGCGGTAGAGAGCGACGCTGTATGCCCAAAAGTACCAGCCCTTATTACGAGTGTGAGGGATGTCCCAGCGGCTACCAGTGGAATGGGTACACGTGCGTGGATATGGACGAATGCGATTTGATTCGGCCCTGTGATGATCTGGTCTCGTGTCGCAACGAAGAAGGCGGCTTCACCTGTGGGCCGTGTCCTCCAGGGTTCACAGGTAGCCAGGGCTGGCGGGGCACTGGCAATGAGAGACGAAGGGAACATTGCGTGGATGTGGACGAGTGCGCTGACGGACGAGCCAACTGTCCAAGAGGACGGCTTTGCGTCAATACCCCGGGCTCATACATCTGCGTTCCCTGCGGCGGGCACTACTACGTGAACACGACGAGGCCGTGCTTCGACCCGGACTCGCTGGTGAAGCGGTGCGACCCCAGCTACTGCAGGCGATTCAACGCCGTCTGTGGTTTCGGACAAAAGTGCGTTTGTAATACCGGTTGGACTGGCAACGGTACAGTGTGCGGACTGGACCGAGATCTAGACGGGCATCCGGACGAGCAGCTGCCTTGTAATGAGCCTCGCTGCAAGAAGGACAACTGCCCCGACGTCTCCAACTCCGGGCAAGAGGACGTGGACGGTGACGGCATCGGGGACTCGTGCGATTCTGATGCAGACGGAGACGGGATTCCCAATTTTCCTGACAACTGCCCGTTGACCCCCAACCCGGACCAGTTGGACGACGACGAGAACAAATCGGACGAGAGAGGAAACGCCTGTGACAACTGTCCCCGGCACTACAACCCTCGCCAGGAGGACACCGACGGAGACGGAACGGGAGACGTCTGTGATTCGGACATGGACGATGACGACATACCGAACCAAGTGGACAACTGCCCCAGGAAGTACAATCCGCAGCAAGACGACATGGACTCGGACGGCGTCGGCGACGTCTGCGACAACTGCCCCCGCGTCCGCAACACGAACCAAGAGGACACGGACAAGGACAACGTCGGCGACGCGTGCGACAGCGATATAGACCGTGACCAAGACGGGATACAAGATGGCTTAGACAACTGCCCGCTGATACCGAACAGCGACCAACAGGACGTGGACCGCGACGACAAGGGCGACGTCTGTGACGACGACGACGACGGAGATGGGATACCGGATCTGGACGACAACTGCCAGATCGTGCCCAATAGGGATCAAAAGGACTCTGATAATGACGGCATTGGAGACGCCTGTGACAATGACAATGACGGCGACCGGGTCATCAACGAGCTGGACAACTGCCCGAACAATTCGCAGATATTTCGAACGGACTTCAGACAGTTCACCACAGTCCGATTGGACCCTGAAGGCGAGTCTCAACAGGAGCCCAACTGGAGGGTGACGGACAACGGAGCTGAGATCCTGCAGACCCTGAACTCGGACCCTGGTCTGGCGGTCGGATTCGACAGCTTCGGCGGAGTCGACTACGAGGGGACCATCTTCGTCAACACAAAGATAGATGACGATTATGTTGGATTTATTTTTGGATACCAAAGCAACAAGAGGTTTTATGTGGTCATGTGGAAGAAGGATAAACAGACTTATTGGCAGAAGACTCCGTTCAGAGCGGTCGCCGAGAACGGCATACAGCTCAAGCTGGTCAACTCGAAGACTGGCCCGGGGAAGATACTCAGGAACGCTCTCTGGAATACTAACTCTACCCCGGATCAGGTCACCCTGCTCTGGAAAGACCCTCGCAACGTGGGCTGGCGCGAGCAGACGGCGTACCGCTGGAAGCTCCTCCACCGCCCCAAGATCGGTCTCATCAGACTGAAGATGTACGAGAACAACCGCCTGGTCGCGGACTCTGGGAACACTTACGACTTCACCCTGAAGGGGGGGAGACTTGGAGTGTTCTGCTTCTCCCAGGAAATGATCATATGGTCTAATCTACTCTACAAATGTAATGATAAGATTCCGGCGAGCATAGCATCGGAGATTTCAACAAGGAACCATTTCGAAATCGACCAAGATTATTTCACAAACGAGTAG

Protein

MSGTYDLLDILRDQKTKLYHEENAPVEIYGSEKAAVESLSCAKDNIRPPTLLRLDEPESDVEEVQEFRKKEALMDREEEMQGDDATNYLEANGILPQPSRGDIPQSAIESCDDEVIRQLTLLRQIIEHLRREVGDQKHTIDSLRSQLHQCCNRVPVTPPPVERCSGSSCYPGVECRNTVAGFECGSCPRGMEGDGRRCRPVLCNRRPCSQGERCVDTDQGFRCERCPGSQTSDGQTCRTACSANPCFGGRVPCQDLPDGRYQCGKCPSGFHGNGVECYRISCRANTCFQGVSCEETQYGPKCGSCPTGYVGDGRQCQHVCDAQKPCGRERRCMPKSTSPYYECEGCPSGYQWNGYTCVDMDECDLIRPCDDLVSCRNEEGGFTCGPCPPGFTGSQGWRGTGNERRREHCVDVDECADGRANCPRGRLCVNTPGSYICVPCGGHYYVNTTRPCFDPDSLVKRCDPSYCRRFNAVCGFGQKCVCNTGWTGNGTVCGLDRDLDGHPDEQLPCNEPRCKKDNCPDVSNSGQEDVDGDGIGDSCDSDADGDGIPNFPDNCPLTPNPDQLDDDENKSDERGNACDNCPRHYNPRQEDTDGDGTGDVCDSDMDDDDIPNQVDNCPRKYNPQQDDMDSDGVGDVCDNCPRVRNTNQEDTDKDNVGDACDSDIDRDQDGIQDGLDNCPLIPNSDQQDVDRDDKGDVCDDDDDGDGIPDLDDNCQIVPNRDQKDSDNDGIGDACDNDNDGDRVINELDNCPNNSQIFRTDFRQFTTVRLDPEGESQQEPNWRVTDNGAEILQTLNSDPGLAVGFDSFGGVDYEGTIFVNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQKTPFRAVAENGIQLKLVNSKTGPGKILRNALWNTNSTPDQVTLLWKDPRNVGWREQTAYRWKLLHRPKIGLIRLKMYENNRLVADSGNTYDFTLKGGRLGVFCFSQEMIIWSNLLYKCNDKIPASIASEISTRNHFEIDQDYFTNE

Uniprot

A0A2H1VZK9   A0A194QKU2   A0A0L7LQW3   A0A212EZM8   H9IX53   A0A194QVH8   + More
A0A3S2TP60   A0A2A4JBX4   A0A2A4JDE5   E0VQ35   A0A1Y1KFW1   A0A1Y1KC59   A0A2J7RKL3   A0A0K8SN26   A0A146LPP8   A0A0A9ZDF3   A0A1B1M0Q9   A0A2H8TD90   J9K964   A0A224XDW2   A0A182FNT9   A0A1S4FIM7   Q16ZU9   B0WVE0   A0A2S2R1N5   W5JW93   A0A1Q3FPU0   A0A023F3J1   A0A182P4E3   A0A182QRY4   A0A084WSA5   Q7QK54   A0A182UXT1   A0A182HZQ6   A0A182NMX8   A0A182U6A2   A0A182RN68   A0A182XWG9   A0A1J1HLI3   A0A182VYF8   A0A182IR04   A0A182MKF1   A0A182XGM1   A0A0K2TRS2   A0A2L2Y9F6   A0A2P2I1C0   A0A3B0JUD1   A0A1B6L9W4   A0A0P4VVB7   B4GJY3   A0A0P4Z3E1   A0A0N8A8K8   A0A0P5S5Z0   A0A162DFK5   A0A0P5FR53   A0A0P5CM97   A0A0N8CAB5   A0A0N8A3Q2   A0A0P5F7N0   A0A0P5XU95   A0A0N8C4G0   A0A0P5EK42   A0A0P5HG21   A0A0P5AS87   A0A0P4ZTS6   A0A1Y1L6J8   A0A0P4YIM1   A0A0P5UTC7   A0A2C9JV62   A0A0N8CUE6   A0A0P4Y347   A0A0P5EI44   A0A0P5CE47   A0A0P5IWS3   A0A0P5C8R0   A0A0P5VR40   A0A0P5CG86   K1PQ45   A0A0N8A7V3   A0A0P5R6U7   A0A0P5CGB0   A0A0N8BSE3   A0A0P5N2P7   A0A0P5XTT6   A0A0P5K353   A0A0P5CZW4   A0A0K8W363   A0A0P4Y4N3   A0A0P5CS41   A0A0P5WL95   A0A0P4Y4B1   A0A0P6B4D3   A0A0P5KKU9   A0A0P5MYD5   A0A0P4Y9B2   A0A0K8VQ52   A0A0P5EFN5   A0A0P4Y407   A0A0M3QTF2   A0A0P5DWK1  

Pubmed

26354079    26227816    22118469    19121390    20566863    28004739    + More
26823975    25401762    17510324    20920257    23761445    25474469    24438588    12364791    14747013    17210077    25244985    26561354    17994087    15562597    22992520   

EMBL

ODYU01005430    SOQ46269.1    KQ459053    KPJ04066.1    JTDY01000288    KOB77888.1    + More
AGBW02011289    OWR46894.1    BABH01018319    BABH01018320    BABH01018321    KQ461073    KPJ09543.1    RSAL01000034    RVE51395.1    NWSH01001952    PCG69575.1    PCG69574.1    DS235389    EEB15491.1    GEZM01086687    JAV59060.1    GEZM01086685    JAV59063.1    NEVH01002717    PNF41376.1    GBRD01011171    JAG54653.1    GDHC01009340    JAQ09289.1    GBHO01001145    JAG42459.1    KT266556    ANS60447.1    GFXV01000272    MBW12077.1    ABLF02024570    GFTR01008448    JAW07978.1    CH477484    EAT40172.1    DS232124    EDS35542.1    GGMS01014640    MBY83843.1    ADMH02000189    ETN67430.1    GFDL01005424    JAV29621.1    GBBI01002826    JAC15886.1    AXCN02001544    ATLV01026419    KE525413    KFB53099.1    AAAB01008799    EAA03707.5    APCN01001998    CVRI01000004    CRK87310.1    AXCM01002302    HACA01011388    CDW28749.1    IAAA01013898    IAAA01013899    LAA04809.1    IACF01002024    LAB67696.1    OUUW01000010    SPP85717.1    GEBQ01019490    JAT20487.1    GDRN01093823    JAI59814.1    CH479184    EDW36949.1    GDIP01219010    JAJ04392.1    GDIP01171873    GDIQ01099340    JAJ51529.1    JAL52386.1    GDIQ01096222    JAL55504.1    LRGB01001581    KZS11044.1    GDIQ01253229    JAJ98495.1    GDIP01184224    JAJ39178.1    GDIP01173914    GDIQ01099339    JAJ49488.1    JAL52387.1    GDIP01185521    JAJ37881.1    GDIP01195875    GDIQ01266809    GDIQ01147863    GDIP01132671    GDIP01108977    GDIQ01052109    JAJ27527.1    JAJ84915.1    GDIP01067478    JAM36237.1    GDIQ01115779    JAL35947.1    GDIP01145320    JAJ78082.1    GDIQ01250530    JAK01195.1    GDIP01198766    JAJ24636.1    GDIP01209762    JAJ13640.1    GEZM01066288    JAV68000.1    GDIP01236366    JAI87035.1    GDIP01108976    JAL94738.1    GDIP01097879    JAM05836.1    GDIP01234471    JAI88930.1    GDIP01148170    GDIQ01052108    JAJ75232.1    JAN42629.1    GDIP01171878    JAJ51524.1    GDIQ01208745    JAK42980.1    GDIP01173912    JAJ49490.1    GDIP01096584    JAM07131.1    GDIP01171916    JAJ51486.1    JH817066    EKC26377.1    GDIP01173913    JAJ49489.1    GDIQ01111868    JAL39858.1    GDIP01171879    JAJ51523.1    GDIQ01149515    JAL02211.1    GDIQ01147862    JAL03864.1    GDIP01067477    JAM36238.1    GDIQ01189897    JAK61828.1    GDIP01179223    JAJ44179.1    GDHF01006805    JAI45509.1    GDIP01236365    JAI87036.1    GDIP01171877    JAJ51525.1    GDIP01084680    JAM19035.1    GDIP01232758    JAI90643.1    GDIP01026696    JAM77019.1    GDIQ01189896    JAK61829.1    GDIQ01149514    JAL02212.1    GDIP01234472    JAI88929.1    GDHF01019158    GDHF01011300    GDHF01000680    JAI33156.1    JAI41014.1    JAI51634.1    GDIP01160874    JAJ62528.1    GDIP01232757    JAI90644.1    CP012523    ALC38779.1    GDIP01154573    JAJ68829.1   

Proteomes

UP000053268    UP000037510    UP000007151    UP000005204    UP000053240    UP000283053    + More
UP000218220    UP000009046    UP000235965    UP000007819    UP000069272    UP000008820    UP000002320    UP000000673    UP000075885    UP000075886    UP000030765    UP000007062    UP000075903    UP000075840    UP000075884    UP000075902    UP000075900    UP000076408    UP000183832    UP000075920    UP000075880    UP000075883    UP000076407    UP000268350    UP000008744    UP000076858    UP000076420    UP000005408    UP000092553   

PRIDE

H9IX53   

Pfam

PF07645   EGF_CA        + More
PF02412   TSP_3
PF05735   TSP_C
PF11598   COMP
PF12662   cEGF
PF00008   EGF

Interpro

IPR001881   EGF-like_Ca-bd_dom        + More
IPR008859   Thrombospondin_C       
IPR013320   ConA-like_dom_sf       
IPR017897   Thrombospondin_3_rpt       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR018097   EGF_Ca-bd_CS       
IPR003367   Thrombospondin_3-like_rpt       
IPR000742   EGF-like_dom       
IPR028974   TSP_type-3_rpt       
IPR013032   EGF-like_CS       
IPR024665   Thbs/COMP_coiled-coil       
IPR028507   Thrombospondin-3       
IPR026823   cEGF       
IPR000867   IGFBP-like       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       

SUPFAM

SSF57184   SSF57184        + More
SSF103647   SSF103647       
SSF49899   SSF49899       

Gene 3D

4.10.1080.10    

ProteinModelPortal

A0A2H1VZK9   A0A194QKU2   A0A0L7LQW3   A0A212EZM8   H9IX53   A0A194QVH8   + More
A0A3S2TP60   A0A2A4JBX4   A0A2A4JDE5   E0VQ35   A0A1Y1KFW1   A0A1Y1KC59   A0A2J7RKL3   A0A0K8SN26   A0A146LPP8   A0A0A9ZDF3   A0A1B1M0Q9   A0A2H8TD90   J9K964   A0A224XDW2   A0A182FNT9   A0A1S4FIM7   Q16ZU9   B0WVE0   A0A2S2R1N5   W5JW93   A0A1Q3FPU0   A0A023F3J1   A0A182P4E3   A0A182QRY4   A0A084WSA5   Q7QK54   A0A182UXT1   A0A182HZQ6   A0A182NMX8   A0A182U6A2   A0A182RN68   A0A182XWG9   A0A1J1HLI3   A0A182VYF8   A0A182IR04   A0A182MKF1   A0A182XGM1   A0A0K2TRS2   A0A2L2Y9F6   A0A2P2I1C0   A0A3B0JUD1   A0A1B6L9W4   A0A0P4VVB7   B4GJY3   A0A0P4Z3E1   A0A0N8A8K8   A0A0P5S5Z0   A0A162DFK5   A0A0P5FR53   A0A0P5CM97   A0A0N8CAB5   A0A0N8A3Q2   A0A0P5F7N0   A0A0P5XU95   A0A0N8C4G0   A0A0P5EK42   A0A0P5HG21   A0A0P5AS87   A0A0P4ZTS6   A0A1Y1L6J8   A0A0P4YIM1   A0A0P5UTC7   A0A2C9JV62   A0A0N8CUE6   A0A0P4Y347   A0A0P5EI44   A0A0P5CE47   A0A0P5IWS3   A0A0P5C8R0   A0A0P5VR40   A0A0P5CG86   K1PQ45   A0A0N8A7V3   A0A0P5R6U7   A0A0P5CGB0   A0A0N8BSE3   A0A0P5N2P7   A0A0P5XTT6   A0A0P5K353   A0A0P5CZW4   A0A0K8W363   A0A0P4Y4N3   A0A0P5CS41   A0A0P5WL95   A0A0P4Y4B1   A0A0P6B4D3   A0A0P5KKU9   A0A0P5MYD5   A0A0P4Y9B2   A0A0K8VQ52   A0A0P5EFN5   A0A0P4Y407   A0A0M3QTF2   A0A0P5DWK1  

PDB

3FBY     E-value=1.64737e-134,     Score=1232

KEGG

101743002    K04659 thrombospondin 2/3/4/5 | (RefSeq) cartilage oligomeric matrix protein

PATHWAY

04145    Phagosome - Bombyx mori (domestic silkworm)
04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)

GO

GO:0007155   GO:0005576   GO:0005509   GO:0005520   GO:0016021   GO:0062023   GO:0016203   GO:0008201   GO:0032991   GO:0033627   GO:0005927   GO:0005515   GO:0042555   GO:0006260   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR10199:SF114   PTHR10199:SF89  

Length:

999

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01663

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  999

 

 

Pi

170.943703

Theta

158.157068

Tajima's D

0.537875

CLR

0.239226

CSRT

0.526523673816309

Interpretation

Uncertain