Silkworm Genome Informatics Database

Gene

KWMTBOMO11301

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr19(-):2681387-2687125 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.163 Nuclear Reliability : 1.242

CDS

ATGGCACCTGTGAAGAACTTATTACCCCAGGAGGGTACCTCCCGCTCCGCGGGGGGAGAATCCCTCCGTGCGGTCGAGCGATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGGCACACACTGCCACGAGGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGAGTCCCAACCGTGCTACTCGAGCGCTGCGAGAGTTTGATCTCGTTGCACTCGGCGCGGAGCTTCGCGAGGAGCGATGCGTCTAGTGGGCGGGAGACGCCAGCGCTGTTAGTGGACAGCACCCGACAGCGGACACGACGGAAGCGGAAGTCGGCTCGACAGCCGGCATCCTCCGCTCAGTCCGACTCGTCGGAAGGAGAGCCTTCCAGCGCCAAGTACATGGCGTTGGCGGAAGGGCCGGCGGCTGCTTCGGCGCCGCCCGCCACTGACTTTGACAAGCCGTCGTCTTGCGGACTGGACGCTGCCTCTTCGGCGCAGTCCAGGGCCGCCTGCCGTGAGGCGAAAAATAAAAAGGAAAGGAAACTAGAAGAGATTGAGCGCCTACAGAGAGCCCTGACGTTGGTGGGTCCCTCTGACCCCCTCCGATCTTGTCAGATAGTTGGCAAAATAGTTGCGACTATTGCAGCCAAATCGACTGGAGGCCTCAAGGGCACCGAAGTGTCGGCCATGAAATCGGCGGCCGCCACACTGGAGGAGAGGCTGCAGGACGTTGTGGACCGCACCACAACCGTGGAGACGGCGGGCTTGCGGCAGGAAGTGGCCCTGCTGCACACCCGCCTCGAGCAAGTATCGGCCGAGAATGGCCAACTTCAGGCGGCGAATGGGCAACTTAGAGTGGACATGGCCGAGTTGCGAACGATGGTTGCCGACCTCATTGAGCGGCAACGCAGCTCGGCCCCTGTCCTTCCTCTGCCCGAAGCAGAAGGCCTCACTGAGGTCGAGGAGCTGAGGCGGCAGCTCCTCATACAGGAAGCACGCAGCTCCAGGGCCTGGACGACGGTAGTGCGGCGCGGGCCCAAAAAGGTGGCGGCGCCTCCTGCGCCGCGCCCCAAGCCCGCCCCTGCGGCCGCCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGAACTGGAAGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTAGTGGAGCTGCTGCCCGCCGGCAAAGAAAAGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGCGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCGGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGAGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACGAAAGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGAGAGCTCCGGGTGACATATTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCGATTGCAACGGCGACCCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAGCTGCAGGATGCCAGGCCGTGGCGCTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGGCTTGTGTTTCCGCTGCGGCCAACCGGGGCACAAGGCAGCCTCCTGCACCACAGCTGCGCCGCACTGCGTCTTGTGCGACGCGGCCAAAAGGAAGGCTGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACAAAAACGAGGAGGGGCGGAAAGAAAAAGAAGCCGGCTGCAAAAAGGGCAGCCGGTGAGTCAGCTCCCGCCGCGGCACCAGAGCAGCCGCAAGGCGGGACAGACGAGGGAGTGATGGACGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCCGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATCGGGGACGTCGACGGCTCCGTGGCCATTGTGTTGAGACAGTCTGCGGCGTTACCCCCCTTGGATATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTGATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCCGAGTTCGAGCGGTTTCTGGGCGGGCTCGAGGCGCTTTTACACCGCCTCGGGTCCCGCCCTGTCATCGTAGCGGGGGACTTCAATGCCAAGTGCACGGCTTGGGGTTCCCCCCGCACGGATGCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCAGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGGAATCCCACGTGGACGTGACGTTCGCGTCCCCGTCCGCCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATACGTCCGATTTGAGCTCTCCGCCTCCTCCTTGTCTTCGTCGTCAGCCGCGGGCGCCCGCGGTGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAAAGGATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGCGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTTGCCCGAGATCGCAAGACTCCGCGAGGAGTGCGTGAGGGCGCGCCGCCGTAGCGCACGCCACCGCCGCCGCCGTCGTCGCGACGCTGCGTTCGCGGAGACGGCGGCCCAGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCTGTGGGCGCTCCCCGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATTGTTGCGGCACTCTTCCCGCCGGCAGCAGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACACCACCGCGTCGCCCCAGCGTTCCCGCTACCGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAGAATGAGAGCGAAGGACGCGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCGTCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCAGAGCAGTACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCGATTCTGCGCGTGAGGGCCCTCTCCGACGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTACCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGGCCCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTCAGCGTAATTTGTTACGCTGACGACACGTTGGTCGTGGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACTAGGATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGCTCTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTACCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGGCTGATGGCAACGGCCGGCTCTTTGAGCCGGCTCCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCTCCCGTATGGTGCCACGCCCTGACCCGCGAGAACGTCGCCGCGCTGCGACGTCCACAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTTGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGTCCGGTCCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAAATGTTGACCGGCCATGGTTGTTTTGGCCGGTACTTGCACAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCATCACTGCGCGGACCGCGACGAGGATGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATAGGTGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGCACGTCCCAGCCCCTGTAG

Protein

MAPVKNLLPQEGTSRSAGGESLRAVERSAARCPTVSGGGTHCHEEGGDSTGRVRDRVPTVLLERCESLISLHSARSFARSDASSGRETPALLVDSTRQRTRRKRKSARQPASSAQSDSSEGEPSSAKYMALAEGPAAASAPPATDFDKPSSCGLDAASSAQSRAACREAKNKKERKLEEIERLQRALTLVGPSDPLRSCQIVGKIVATIAAKSTGGLKGTEVSAMKSAAATLEERLQDVVDRTTTVETAGLRQEVALLHTRLEQVSAENGQLQAANGQLRVDMAELRTMVADLIERQRSSAPVLPLPEAEGLTEVEELRRQLLIQEARSSRAWTTVVRRGPKKVAAPPAPRPKPAPAAAAPRQEGRAEPRGRTGRRRPRAPRSAAVVVELLPAGKEKGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRVTYSGTRTAWARCPIATATLLATPPQGRPSDSPGRLRVGWVVAHVQLQDARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKKKPAAKRAAGESAPAAAPEQPQGGTDEGVMDDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWIGDVDGSVAIVLRQSAALPPLDMVARGPGYVAARIDGTVVIGAYFSPNRSLAEFERFLGGLEALLHRLGSRPVIVAGDFNAKCTAWGSPRTDARGEALSEWAIATSLCLLNRGTVATCVRWNGESHVDVTFASPSAVRRTRGWRVLEGAETLSDHRYVRFELSASSLSSSSAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWLPEIARLREECVRARRRSARHRRRRRRDAAFAETAAQLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQLWALPVTERLQPRQLREIVAALFPPAAGGDFEPPQMDATWGTPPRRPSVPATEEPPPPITGAEIHAAVSRMRAKDAAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPVVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLGPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALLFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRENVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSCRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEDDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSQPL

Uniprot

A0A0J7KQK3 A0A0J7KRB8 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KIS5 + More
J9KJG8 X1WZ64 J9KM84 J9KWM9 J9LA43 A0A139WNC9 A0A139WN93 J9M6A5 A0A139WAH4

Pubmed

18362917 19820115

EMBL

LBMM01004272 KMQ92618.1 LBMM01003988 KMQ92922.1 LBMM01012412 KMQ86235.1 + More
LBMM01008278 KMQ89009.1 LBMM01005474 KMQ91485.1 LBMM01006977 KMQ90149.1 ABLF02041886 ABLF02011183 ABLF02041884 ABLF02018942 ABLF02041885 ABLF02011927 ABLF02018098 KQ971310 KYB29500.1 KYB29499.1 ABLF02020969 KQ971388 KYB24913.1

Proteomes

UP000036403 UP000007819 UP000007266

Pfam

PF14529 Exo_endo_phos_2 + More
PF00078 RVT_1

Interpro

IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf
IPR036691   Endo/exonu/phosph_ase_sf
IPR005135   Endo/exonuclease/phosphatase
IPR000477   RT_dom

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10

ProteinModelPortal

A0A0J7KQK3 A0A0J7KRB8 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KIS5 + More
J9KJG8 X1WZ64 J9KM84 J9KWM9 J9LA43 A0A139WNC9 A0A139WN93 J9M6A5 A0A139WAH4

PDB

1WDU E-value=6.70182e-09, Score=151

KEGG

101735599 no KO assigned | (RefSeq) actin cytoskeleton-regulatory complex protein pan-1-like

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016021 GO:0032259 GO:0008276 GO:0042555 GO:0006260 GO:0006811 GO:0005622 GO:0006810 GO:0003824

Length:

1735

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10552

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1735

Pi

19.750959

Theta

113.012408

Tajima's D

1.040148

CLR

0

CSRT

0.67591620418979

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree