SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11297
Pre Gene Modal
BGIBMGA002751
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_leucine-rich_repeat-containing_protein_49_[Bombyx_mori]
Location
Bomo_Chr19(-):2629619-2638555      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.735
 

Sequence

CDS
ATGTGTCGCCACCCCTATACAATCCCAGGGAGTCGTAAGAACCGACTAAGGGAATATGCACAAGACATCAGTATTAGAAAAATCGCATTTCGTACAAGGGGCAGATCTGCGCAATCACTAGATGTAAGCGGTCCGAAGGTGGATCACGGATCTTGCGGAGAGGGACGTTTGTTTTTACAAATCAAACCTGCTATAGCTGACCCGAGACAGGCATTAGCACAAAGATCGCACACTTCGCTCTCAGGAAACGATTTTATTAGAGAGGAGACCAAGGATGATCCCATTAATATTCAAGCAGTGGGGGAAGGGAAAGTGCAACTCTCGCGGACGCCTCAAGAAAAAGATCGACTTCCTGACAGGATAAGCCTTGACAGGCGCGGACTCTCCTCCATCCCACACATCGTCGGCGAACCAGGCTTACGTCTCTTATCTCTACAGCACAATCTTATAAACAGTCTAACGGGACTAACACCACTTGACCTCGGGAAACTGGTGTTCTTAGACGTCTACGACAATCAGATCGACAAAATAACAGCTCTGGATAGATTGTTTAGTCTGAGGGTACTTCTGATGGGAAAGAACAGAATCAAAAGAATTGAAGGTCTTTCGAATTTAATAAAATTAAAAGTATTAGATTTACACGGTAATCGAATTGGGAAAGTATGTGGTCTTTCTAATTTGGTCGAACTTAAAGTTCTTAATCTTGCCGGGAATCAAATTAAGGGTATCGGCATTACCGATCTACAAGGTCTAGCTTCGTTGAGAGAGTTAAATTTGAAACGAAACCGCTTAAGGAAGCTACAAGGTTTCCAGAACACGCCGAAATTGCAAAAACTTTACCTGGGCAACAATGACTTGCAGAGCGTCGAAGACATGTCAACGCTGAGTGAAGCCACTTCGCTTATAGACATTTCTTTAGATGGGAATCCCGTGGCTCTAGGAGGAGATTGCACTCCATTCCTTGTTTCTTATCTTCCGAATTTGTTGACTTTGACTAATATGCATATCACTGAACAGGTGAGGAGGGCTGCAATGGCGTGGCGGAATAACAAGGAAGCAGCCCATGCCGCTTATTGTGCCCTCGGTGGAAATGCCCAACAAGAAGCAAGACGCGACCAAATAATTAACAACGCTCGCACTAATTGGGAATTACTAAGATCAGAAAACAAATGTTTCGTTAATGTAATGAGTCCAATGAAAAATTTGGACTTGGAAAAGGAATTCGGCCTTGAAGCCACCGCTGAGATATCGCAAAGTTGCAACCAAACCATGGATGTAGCGGGCCTGCCTGATGTTGTAGTACCTCTACAACAACTAGAAACTGAGGATTCGGATTGCAAAAACAATAACAGCGATACAAACGTCAAAGTAGTTGCCGAAGCGCCTAAGCCATCTCCTATTAGAAAACTTCAGAGGAGCTCCACAGTTCGGAAACCATCAGAGAGACGTGTCAATTTTTCTGATAGAAGTGCCTCTCAGGACACTGACGCCTCGCATTCAACTTCCACGAGCAGTGACTTAAGATTGCCACCTATTTTGCTACCTATCATCTCGTCTCTGGAAAACGTAAAGTTAACAGACAGTACTGATCATGTTCTGAAGCGATGGGAGAGTATTTCTAGCGTAGAACCAGTCATAGATTCTTCATTTAGTTCGTTTCCTTCTTCGTCGAGCGACAGCGAAGAAGAAAATAGCAAAAGACCGATTCGTCGTATGCCGACAGCGCTGAGGCGCCGCGAAAAGTTTAGCACGATGCGTTCCAGGTCTGTTTGTGACCCGGAAAGTCGAAGAGTAAAGGGTAAGAATTCTGAAAACAGTGAAATCGCGAGTAACTTATCAAGCAGCACGAATATAGCTTCTTCAACGTCGGGAAGCGATCATAATTCGAAGGTTTTGAGACGTGACGGCTCTCTCAACAGTAAACTAACCAATAGAAATATTCGAAGCGCGACAATCTCACGACGAAACGAAAGAGCCTCTTCAGCGAGCAGAGCTTCGACAGCAAGAGTCAAGTCTGGTAAAAGCCTATCTAGTTTCAAGACTTCGGAACCGGTACCAAAAGCTATAATACCAATGTCAAAAGATAGGGAACAAGGTGTTGATTATTTAGTCGAAGTCTGTAACGGCTTGGTGAGTGCGTGGGGCGCCGGAGCAGTACGTCGGTTAGCGAGAGATTGGGAATGGGAAAAAGCTCGCACAGTTACCAAAGCTGCCTTTCATTACGTTCATTTCAACGCCGTCGCTCAATCTCTGCCCGAATTGAAAAGCAAATTCCCGAACGTGACACACATATCAGTGCGGGCGACGGGCTTACAATGGTTGGGCCAGCTACACGCTCTAGCGGAATTAAGAGGTATCACTGGCCTAGCGGTTTTGCCAGAAGGTAATCCTATACACGCAAAGATCTGGCGTGAATATTCCGTTTACAGACTTGCTCATTGGGGCTTGAAGGAAATCAATGATGAGCTGGTAAGGAAAACAAAAATTCAAACCATTTTGACCACCACCACTTGA
Protein
MCRHPYTIPGSRKNRLREYAQDISIRKIAFRTRGRSAQSLDVSGPKVDHGSCGEGRLFLQIKPAIADPRQALAQRSHTSLSGNDFIREETKDDPINIQAVGEGKVQLSRTPQEKDRLPDRISLDRRGLSSIPHIVGEPGLRLLSLQHNLINSLTGLTPLDLGKLVFLDVYDNQIDKITALDRLFSLRVLLMGKNRIKRIEGLSNLIKLKVLDLHGNRIGKVCGLSNLVELKVLNLAGNQIKGIGITDLQGLASLRELNLKRNRLRKLQGFQNTPKLQKLYLGNNDLQSVEDMSTLSEATSLIDISLDGNPVALGGDCTPFLVSYLPNLLTLTNMHITEQVRRAAMAWRNNKEAAHAAYCALGGNAQQEARRDQIINNARTNWELLRSENKCFVNVMSPMKNLDLEKEFGLEATAEISQSCNQTMDVAGLPDVVVPLQQLETEDSDCKNNNSDTNVKVVAEAPKPSPIRKLQRSSTVRKPSERRVNFSDRSASQDTDASHSTSTSSDLRLPPILLPIISSLENVKLTDSTDHVLKRWESISSVEPVIDSSFSSFPSSSSDSEEENSKRPIRRMPTALRRREKFSTMRSRSVCDPESRRVKGKNSENSEIASNLSSSTNIASSTSGSDHNSKVLRRDGSLNSKLTNRNIRSATISRRNERASSASRASTARVKSGKSLSSFKTSEPVPKAIIPMSKDREQGVDYLVEVCNGLVSAWGAGAVRRLARDWEWEKARTVTKAAFHYVHFNAVAQSLPELKSKFPNVTHISVRATGLQWLGQLHALAELRGITGLAVLPEGNPIHAKIWREYSVYRLAHWGLKEINDELVRKTKIQTILTTTT

Summary

Uniprot
A0A2H1X091   A0A2A4JDF5   A0A0L7KLJ0   H9IZR6   A0A194QF12   A0A212EZG2   + More
Pubmed
26227816    19121390    26354079    22118469   
EMBL
ODYU01012423    SOQ58721.1    NWSH01001952    PCG69584.1    JTDY01009037    KOB64173.1    + More
BABH01039984    KQ459053    KPJ04062.1    AGBW02011289    OWR46889.1   
Proteomes
UP000218220    UP000037510    UP000005204    UP000053268    UP000007151   
PRIDE
H9IZR6   
Pfam
PF13855   LRR_8
Interpro
IPR001611   Leu-rich_rpt        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR032675   LRR_dom_sf       
Gene 3D
3.80.10.10    
ProteinModelPortal
A0A2H1X091   A0A2A4JDF5   A0A0L7KLJ0   H9IZR6   A0A194QF12   A0A212EZG2   + More
PDB
6HKW     E-value=2.73856e-13,     Score=186

Ontologies

KEGG
101735327    K16606 leucine-rich repeat-containing protein 49 | (RefSeq) leucine-rich repeat-containing protein 4
GO
GO:0005515   GO:0003676   GO:0032259   GO:0008276   GO:0042555   GO:0006260   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Topology

Length:
837
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00962
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00008
outside
1  -  837
 
 

Population Genetic Test Statistics

Pi
163.18259
Theta
153.209267
Tajima's D
-1.001909
CLR
0.82912
CSRT
0.139343032848358
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号