SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11296
Pre Gene Modal
BGIBMGA002752
Annotation
PREDICTED:_zinc_finger_protein_674_isoform_X2_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.93
 

Sequence

CDS
ATGGATGACACTGAAAGCACAACTACATCTGCAGATGAGAACACTGGAAATTTATGCGATAATCCTACCAGGGACACTTTGGCTGAAGGTTTGTTAGGGCTCCTGAAGCCGACGGTAGATCAACTGGACGACAGAGTCAAAGCCACAAGAATAGCACAACTAGAATTGAAGCAACAAATAGATTCGCTCAACGAAGAACTCTTAAAAGTACGAGAGGCACTCAATAACCATCCCGACTTGGATCCATATGTGAAAAAACTCATTGCAGCAAAACATAAAGTGACAGTAGTCCTGAATGTTCTGCAAGCTTCTCAGGATAGAATAAATGAAATAAGGCGAATGATTGTAAAAGAAAAGAGTGTACGTACAACTGTTGTACAAACTACACTACAACCATCACCTCAGGAACCAGAGCAAACTGAAGATAGCTTTCTTCTCATTGATGCTATAGAAAAAGATTTAGAAAACCTACGGTCTAGGAATCCTGCTTTGTGCCTTGAAGTAGGCTCGGGTAGTGGTGTTGTAGTAACTGCATTTGGTATGGCATTCCCTTCAACATTCTGTATCAGTACAGACATCAACTTCAGAGCATGCATAATGTCAAAAAAAACTGCGGAATATAACAAGGTTATATTTGATTCAGTAAGGATGGATCTGGCGAGTTCGTTTGCTGATAATATATTTGATATCATAATATTTAATCCTCCGTATGTAGTGACAGATTCTGAAGAATGCGGCGGAGATGATATCACAGCCAGCTGGGCAGGTGGGGTCAAAGGGAGAGAAGTAACAGACAGATTGTTAGAAATGATACCAAAGAAATTAGCTAAAGATGGTACATTCTACCTTCTGCTGATTGAAGAGAACATTCCAGATGAGGTAATCAATATTATGTCTAATCATGGATTTAGATATAAAACTGTGGTAAGAAGGAAAGTGAGGAACGAACAACAAATAGTTTTAAAATTTTATAGAATAATATATTGA
Protein
MDDTESTTTSADENTGNLCDNPTRDTLAEGLLGLLKPTVDQLDDRVKATRIAQLELKQQIDSLNEELLKVREALNNHPDLDPYVKKLIAAKHKVTVVLNVLQASQDRINEIRRMIVKEKSVRTTVVQTTLQPSPQEPEQTEDSFLLIDAIEKDLENLRSRNPALCLEVGSGSGVVVTAFGMAFPSTFCISTDINFRACIMSKKTAEYNKVIFDSVRMDLASSFADNIFDIIIFNPPYVVTDSEECGGDDITASWAGGVKGREVTDRLLEMIPKKLAKDGTFYLLLIEENIPDEVINIMSNHGFRYKTVVRRKVRNEQQIVLKFYRIIY

Summary

Pfam
PF14712   Snapin_Pallidin        + More
PF05175   MTS
PF00096   zf-C2H2
PF07776   zf-AD
PF09468   RNase_H2-Ydr279
PF17745   Ydr279_N
Interpro
IPR007848   Small_mtfrase_dom        + More
IPR004557   PrmC-related       
IPR028119   Snapin/Pallidin/Snn1       
IPR029063   SAM-dependent_MTases       
IPR002052   DNA_methylase_N6_adenine_CS       
IPR012934   Znf_AD       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR040456   RNase_H2_suB       
IPR019024   RNase_H2_suB_wHTH       
IPR041195   Rnh202_N       
SUPFAM
SSF53335   SSF53335        + More
SSF57667   SSF57667       
PDB
6K0X     E-value=4.94868e-24,     Score=274

Ontologies

Topology

Length:
328
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
3.34486
Exp number, first 60 AAs:
0
Total prob of N-in:
0.15046
outside
1  -  328
 
 

Population Genetic Test Statistics

Pi
182.239599
Theta
183.611183
Tajima's D
0.002955
CLR
0
CSRT
0.364781760911954
Interpretation
Uncertain
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