Gene

KWMTBOMO11293

Pre Gene Modal

BGIBMGA007105

Annotation

Uncharacterized_protein_OBRU01_22645_[Operophtera_brumata]

Location

Bomo_Chr19(-):2604652-2605705      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.271

CDS

ATGAACACACCTATCCGTACCCTAAATTGCCCGATCTCAGAAGACAACGTGAACCGGAAGCGCGGAAGCCGCCCGAAATCCTACATAGAAAGTCCAATTGGCTCCAACCAACCCTCAACATCGGCGCTTCTCGACGAGATAAGGCTACTGAGACAAGATGTCTTGGACGTAAAAACTCAACTATCGTCCGTAACTGACAACCTCATGCAAAAAATATCCTTTTTCGAAAACAGGCTTACCTCAAAAGAAGCGGAGATTATAAATTTAAAAACAACCATAATCTCTTTGCAAGAAACCATTAACTCGCATGAGCAACACCAGTTACGTAATGAGTTGGAAATAGTCGGCATTCCAGAAAACAGCAACGAAAATTTAATGCACATACTATTAACTACCTCTAAAAAATTAGGAGTCGAGCTGCAAGACACCGATATCGACCAGGTAATCAGAGTTGGGTTGAGGCAATCTGCACCATCATCCTCTTCCACAACAAGACCAGTTGTCGCGAAATTCACCCGCAAAAATAAAAGAGATGAACTGCTTGCCGCCGCAGGTACAAGACGTGGGCTAACATCCAAAGACATCATCAGTGGAACGTCATCTACGCTGTACTTTAATGAACGACTGACCAAAACAAATAGGCAGCTTTTCGGTGAAGCGAGAAGGTTCGCAAAAGAACATATTTATAAATTTTGCTGGGTTCGAAATGGTAATATCCTTATACGAAAAGCTCCAAATGGCGATGGTAAAAAAAATCCAGTCTATACCATACGATCAAAGGAGGACTTGGATAGACTTTTTCGCGCATCTACTACTTGCCCGGAAATCACCAACGCGACTGCTGACCAGGTCTAA

Protein

MNTPIRTLNCPISEDNVNRKRGSRPKSYIESPIGSNQPSTSALLDEIRLLRQDVLDVKTQLSSVTDNLMQKISFFENRLTSKEAEIINLKTTIISLQETINSHEQHQLRNELEIVGIPENSNENLMHILLTTSKKLGVELQDTDIDQVIRVGLRQSAPSSSSTTRPVVAKFTRKNKRDELLAAAGTRRGLTSKDIISGTSSTLYFNERLTKTNRQLFGEARRFAKEHIYKFCWVRNGNILIRKAPNGDGKKNPVYTIRSKEDLDRLFRASTTCPEITNATADQV

Uniprot

H9JC60   A0A2A4J6Z0   A0A0L7KR27   A0A2W1BHR3   A0A2A4J6A9   A0A2A4IZ17   + More
A0A2H1WRH7   A0A2H1WIH0   A0A2A4K4X7   A0A2W1BEV5   A0A2A4J0K9   A0A0L7KMA8   A0A0L7LGG0   A0A0L7LB39   A0A0L7KSF2   A0A0L7L2Q0   A0A0L7K422   A0A0L7L550   A0A0L7KT58   A0A0L7LT54   A0A2W1C270   A0A2A4ITG1   A0A0L7KW99   A0A2A4J8T1   A0A194QNP5   A0A0L7LMB4   A0A0L7LCM2   A0A2A4JD92   A0A2A4JGT4   A0A0N0PFG8   A0A0L7LLW9   A0A0L7LUR8   A0A0L7LR99   A0A0L7L3H2   A0A0L7K2H2   A0A0L7KL91   A0A0L7KNH2   A0A2A4JDI4   A0A2A4KAI6   A0A0L7L532   A0A0L7K2I9   H9JHN2   A0A2H1WQP2   A0A2H1WVR8   A0A0L7L9T9   A0A2A4JUE7   A0A0L7KTT9   A0A0L7LLF8   A0A2A4IYM6   A0A0L7KRC3   A0A0L7LKW3   A0A0L7KMZ2   A0A0L7L864   A0A2A4IUX2   H9J7H5   A0A1Y1MTQ3   A0A0K8S6B5   A0A194PTX1   A0A1Y1M7R7   A0A2A4JD31   A0A0L7L7A2   A0A2H1VKR1   A0A2H1WBH0   T1HCI2   T1HBQ9   T1HAF0   T1HA40   T1HBR1   A0A1S3DCA1   A0A3S2TB59   A0A2A4JR78   A0A1S3DGR2   A0A2H1V7J6   A0A2A4IXU4   A0A0L7K2T7   A0A0L7LF48   A0A0L7K2E3   A0A1B6LMZ9   A0A147BAN2  

Pubmed

19121390    26227816    28756777    26354079    28004739    29652888    + More

EMBL

BABH01014938    NWSH01002711    PCG67639.1    JTDY01007036    KOB65506.1    KZ150197    + More
PZC72320.1    NWSH01002730    PCG67615.1    NWSH01005158    PCG64392.1    ODYU01010507    SOQ55661.1    ODYU01008890    SOQ52873.1    NWSH01000125    PCG79301.1    KZ150150    PZC72841.1    NWSH01003975    PCG65605.1    JTDY01009015    KOB64201.1    JTDY01001298    KOB74271.1    JTDY01001866    KOB72688.1    JTDY01006445    KOB66006.1    JTDY01003432    KOB69564.1    JTDY01011736    KOB53709.1    JTDY01002966    KOB70404.1    JTDY01006205    KOB66199.1    JTDY01000181    KOB78416.1    KZ149908    PZC78213.1    NWSH01008646    PCG62462.1    JTDY01005149    KOB67319.1    NWSH01002492    PCG68176.1    KQ461191    KPJ07137.1    JTDY01000562    KOB76673.1    JTDY01001653    KOB73242.1    NWSH01001982    PCG69514.1    NWSH01001505    PCG71029.1    LADJ01030744    KPJ21224.1    JTDY01000624    KOB76430.1    JTDY01000042    KOB79218.1    JTDY01000273    KOB77970.1    JTDY01003157    KOB70048.1    JTDY01017442    KOB51849.1    JTDY01009085    KOB64118.1    JTDY01007941    KOB64843.1    NWSH01001817    PCG70031.1    NWSH01000010    PCG80924.1    JTDY01002895    KOB70525.1    JTDY01017010    KOB51869.1    BABH01012931    BABH01012932    ODYU01010286    SOQ55282.1    ODYU01011375    SOQ57082.1    JTDY01002139    KOB72021.1    NWSH01000638    PCG75103.1    JTDY01005744    KOB66673.1    JTDY01000739    KOB76046.1    NWSH01004492    PCG65047.1    JTDY01006954    KOB65569.1    JTDY01000729    KOB76082.1    JTDY01008292    KOB64643.1    JTDY01002313    KOB71687.1    NWSH01006948    PCG63178.1    BABH01013843    GEZM01021253    JAV89053.1    GBRD01017005    JAG48822.1    KQ459592    KPI96861.1    GEZM01038166    GEZM01038165    JAV81744.1    NWSH01002051    PCG69303.1    JTDY01006475    JTDY01002579    KOB65982.1    KOB71161.1    ODYU01002850    SOQ40844.1    ODYU01007238    SOQ49844.1    ACPB03011237    ACPB03014935    ACPB03021827    ACPB03024613    ACPB03027065    ACPB03014947    RSAL01001410    RVE40802.1    NWSH01000830    PCG73963.1    ODYU01001084    SOQ36825.1    NWSH01005418    PCG64228.1    JTDY01013395    KOB52145.1    JTDY01001455    KOB73826.1    JTDY01015045    KOB51976.1    GEBQ01014872    JAT25105.1    GEGO01007565    JAR87839.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000015103    + More
UP000079169    UP000283053   

PRIDE

H9JC60    H9JHN2    H9J7H5   

Pfam

PF03258   Baculo_FP        + More
PF00628   PHD
PF00076   RRM_1

Interpro

IPR004244   Transposase_22        + More
IPR004941   Baculo_FP       
IPR013083   Znf_RING/FYVE/PHD       
IPR001965   Znf_PHD       
IPR019787   Znf_PHD-finger       
IPR011011   Znf_FYVE_PHD       
IPR019786   Zinc_finger_PHD-type_CS       
IPR002219   PE/DAG-bd       
IPR001841   Znf_RING       
IPR027267   AH/BAR_dom_sf       
IPR036427   Bromodomain-like_sf       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR034209   PUF60_RRM1       
IPR018527   Rubredoxin_Fe_BS       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF57903   SSF57903        + More
SSF103657   SSF103657       
SSF56219   SSF56219       
SSF54928   SSF54928       
SSF57667   SSF57667       

Gene 3D

3.30.40.10     1.20.920.10     3.30.70.330     3.60.10.10    

CDD

cd12370  RRM1_PUF60

ProteinModelPortal

H9JC60   A0A2A4J6Z0   A0A0L7KR27   A0A2W1BHR3   A0A2A4J6A9   A0A2A4IZ17   + More
A0A2H1WRH7   A0A2H1WIH0   A0A2A4K4X7   A0A2W1BEV5   A0A2A4J0K9   A0A0L7KMA8   A0A0L7LGG0   A0A0L7LB39   A0A0L7KSF2   A0A0L7L2Q0   A0A0L7K422   A0A0L7L550   A0A0L7KT58   A0A0L7LT54   A0A2W1C270   A0A2A4ITG1   A0A0L7KW99   A0A2A4J8T1   A0A194QNP5   A0A0L7LMB4   A0A0L7LCM2   A0A2A4JD92   A0A2A4JGT4   A0A0N0PFG8   A0A0L7LLW9   A0A0L7LUR8   A0A0L7LR99   A0A0L7L3H2   A0A0L7K2H2   A0A0L7KL91   A0A0L7KNH2   A0A2A4JDI4   A0A2A4KAI6   A0A0L7L532   A0A0L7K2I9   H9JHN2   A0A2H1WQP2   A0A2H1WVR8   A0A0L7L9T9   A0A2A4JUE7   A0A0L7KTT9   A0A0L7LLF8   A0A2A4IYM6   A0A0L7KRC3   A0A0L7LKW3   A0A0L7KMZ2   A0A0L7L864   A0A2A4IUX2   H9J7H5   A0A1Y1MTQ3   A0A0K8S6B5   A0A194PTX1   A0A1Y1M7R7   A0A2A4JD31   A0A0L7L7A2   A0A2H1VKR1   A0A2H1WBH0   T1HCI2   T1HBQ9   T1HAF0   T1HA40   T1HBR1   A0A1S3DCA1   A0A3S2TB59   A0A2A4JR78   A0A1S3DGR2   A0A2H1V7J6   A0A2A4IXU4   A0A0L7K2T7   A0A0L7LF48   A0A0L7K2E3   A0A1B6LMZ9   A0A147BAN2  

KEGG

NA   

GO

GO:0035556   GO:0046872   GO:0003723  

PANTHER

PTHR11505  

Length:

284

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00016

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07281

outside

1  -  284

 

 

Pi

318.458019

Theta

166.222865

Tajima's D

2.694151

CLR

0.168222

CSRT

0.963401829908505

Interpretation

Uncertain