Gene

KWMTBOMO11287

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):2534847-2538065      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.282 Mitochondrial   Reliability : 1.432 Nuclear   Reliability : 1.226

CDS

ATGGGCAAAGCAAAAAATGAACGGCCCCCAGTCCCGGGCAGCCCCGCTATTCCTGGTTACGGCAGCGGCCACGGTAACGGTGGGGCAGGGGGTGCTAAGAATCCCCCGGTGCGATCCGGCTGCCATAAACGACTGTACCTTGGCGCGTATAATACACGGACATTGCTGAAAACTGAACATCTCAAAGAGCTGGAGACAGGATTGAGCGCAATAAATTGGCATATTATTGGCCTATCGGAAACCCGAAGAGAGGGAGAGGGTTGCGAAACCCTAGCCTCAGGGAATATGCTCTTCTATCGAGAAGGAGAACAGCTCTCGCAGGGCGGCGTTGGTTTCCTTGTCCACAAATACTTTGTCAACAACATTACGGAAGTCAGTAGTGTGTCGGCGCGGGTTGCGTATCTTGTAGTAAAACTAAACAGTAGATACTCATTAAAAGTTGTGCAAGCATACGCTCCCACATCCACATACTCTGACGAAGTTTGCTCGGTCTTTTACGATGATATCGTAAAAGCCATCGAACGCATCACTAAGACCCATTATACCGTAGTGACGGGGGATTTCAACGCGAAAGTAGGAATACAAGAATGTGGAGAGCCTGTATTGGGACCCCACGGTGTTGGCTCTAGGAATTCCCGAGGGCAAATGCTGGTAAATTTTCTTGAGATGCGGGAGCTTTCCTTGATGAATTCGTTCTTCAAGAAAGGACTCCACAGAAAATGGACCTGGCAAAGCTCAGACGGGGAGACTAGAAATGAAATAGACTTCATTTTAGCGAATAAGTGGCACATATTTAGGGACGTCACCGTGATCAATAGGGTTAAGACTGGCAGCGATCACCGGCTGGTACGCGGCACCCTAAATATGGACATTAAGCTGGAAAGATCGCGTATGGTAAAGTCTGGCTTGCGACCAACTAGGCAACAAATCTCGGAGCCCCCAGAAAACTTCCAATTAGAAGTCAAAAACAGGTTTGACGTTTTGGAAACTGACTGCGATGTGGATAAGCGTATCAACGAAATGGTGAAAATTCTAAGAGAAGTGGGCAATAAATACTTTCAGCATAGCAGAAAAGGCCAAGACACTAAACTCTCCAACGAGACCCTGCTATTGATGAAACAGCGAAGGGAAACTGCAGATGCTGCTCCGTCAGATGGAAAAACTATAAACACTAAAATCAGAAAGCTGATTAGGCGTGACCTTCGCCAATTCAACACAACAAAGATTAAAGAGGCAATAGAACAAAACAAAGGCACCAAAGTGTTTATACGGCAGCAACAACTAGGCCGAAGCCATCTGACGAAGCTCAAAACTGCCAATGGAAGAATTGTTAACTCAAGATCAGAAGTCCTCACTAAAGTGGAGAACTACTACCGTAGTCTCTATGCCTCACATGCTCCCAAACCCTTTGCCCACCCAGAGAATGATCACCGAGCCCCTTTAGTCCGCCACTATACGGAAGACATACCCGACGTCAATATAGAGGAGATAAGGGCTGCTTTGGAACAGCTTAGAAATAACAGAGCTACAGGGGATGACGGAATCAGTACAGAATTGTTGAAAGCAAGTGGTACACCAGTTCTCAACCAATTATGCACAACGTTCAACACCGTCATCCAAAAAACGACTACACCGGAAGCCTGGAGCAAGGGTACTGTCATTATTTTCTTTAAGCAGGGAGACCGTGCTCTGCTCAAGAACTACAGGCCTATTTCACTTCTTAGCCATATTTATAAGCTGTTCTCGAGAGTCCTTACAAATCGCTTGGCCTCTAGACTTGACGAGTTCCAACCTCCGGAGCAGGCTGGGTTTCGCAAAGGCTACAGTACGGTAGACCACATCCACACGCTAAGACAGGTTATTCAGAAGACTGAAGAATACAATCGTGCTCTGTGTCTCGCGTTTGTGGACTACGAAAAAGCCTTCGACTCCGTCGAAACTTGGGCTGTTCTGGAATCCTTACAGCGATGCCTAGTCGATTATCGGTACGTTGAGGTGTTGAAGAGTTTATATAAAGCCGCCAAAATGACAGTCCAGATCCAAAACCAGCAGACAAACCCGATTGAGCTTCACAGAGGAGTGCGACAGGGTGACGTTATATCGCCGAAGCTGTTCACTGCTGCTCTCGAGGATGTCTTCAAGACTCTGGACTGGAGTAAGCTGGGCATCAATGTCAATGGCGAGTATCTTTCACACCTCCGATTTGCGGACGATATCGTTATAATGGCAGAGTCGCTGGAGGATCTCAGCTGTATGCTAGGTGAGTTCAATGCCGCGTCACGACGTGTTGGCCTGGGAATGAATCTGGACAAAACTAAGGTCATGTTCAACGACCATATCATTCCTGGACCGGTAATAGTCGAATCTGCGGTACTCGAAGTTGTGTCTGAATACACTTATCTAGGCCAAATTATTCAGCTGGGCAGGGCCAACTTTGAGAAGGAAGCTGATAGGCGCATACAGTGGGGCTGGACTGCGTATGTAAAACTCCGTCACATCTTGAACTCAGCAATCCCGCAATGCTTAAAGACAAAAGTTTTTAACGCTTGTGTGCTGCCGGTCATGACATATGGCGCTGAAACGTGGACATTAACCGTAGGTTTGGTCCGTAAGCTCAAAGTCGCTCAGCGTGCTATGGAAAGGTGTATGCTCGGAGTTTCTTTGATGGATCGAGTCAGAAATGATGAAATTCGTCAAAGAACCAAAGTAACCGACATAGTCCTAAAGGTTAGCAAGCTGAAGTGGCAATGGGCCGGACATACGTGTCGCAGAACCGATGGCCGAGCAGACGTGTTCTGGACTGGAGACCGCGTACCGGTAAACGCAGCGTTGGGCGTCCCCCTGCCCGTTGGACCGATGACTTGCGGCGATATGCTGGGAGAGATTGGATGCGGAAGGCGGAGGATCGCTCATTGTGGCGGACTATGGGAGAGGCCTACATCCAGCAGTGGAGAGACACAGGCTGATGATGATGATGATATTCTTCATAATTTTCTGATGTTCTTTTTGGCAGGGCTTTTTGGAAGTGTTTTTATGCTTGTGTCTAAAGTTTTGTAA

Protein

MGKAKNERPPVPGSPAIPGYGSGHGNGGAGGAKNPPVRSGCHKRLYLGAYNTRTLLKTEHLKELETGLSAINWHIIGLSETRREGEGCETLASGNMLFYREGEQLSQGGVGFLVHKYFVNNITEVSSVSARVAYLVVKLNSRYSLKVVQAYAPTSTYSDEVCSVFYDDIVKAIERITKTHYTVVTGDFNAKVGIQECGEPVLGPHGVGSRNSRGQMLVNFLEMRELSLMNSFFKKGLHRKWTWQSSDGETRNEIDFILANKWHIFRDVTVINRVKTGSDHRLVRGTLNMDIKLERSRMVKSGLRPTRQQISEPPENFQLEVKNRFDVLETDCDVDKRINEMVKILREVGNKYFQHSRKGQDTKLSNETLLLMKQRRETADAAPSDGKTINTKIRKLIRRDLRQFNTTKIKEAIEQNKGTKVFIRQQQLGRSHLTKLKTANGRIVNSRSEVLTKVENYYRSLYASHAPKPFAHPENDHRAPLVRHYTEDIPDVNIEEIRAALEQLRNNRATGDDGISTELLKASGTPVLNQLCTTFNTVIQKTTTPEAWSKGTVIIFFKQGDRALLKNYRPISLLSHIYKLFSRVLTNRLASRLDEFQPPEQAGFRKGYSTVDHIHTLRQVIQKTEEYNRALCLAFVDYEKAFDSVETWAVLESLQRCLVDYRYVEVLKSLYKAAKMTVQIQNQQTNPIELHRGVRQGDVISPKLFTAALEDVFKTLDWSKLGINVNGEYLSHLRFADDIVIMAESLEDLSCMLGEFNAASRRVGLGMNLDKTKVMFNDHIIPGPVIVESAVLEVVSEYTYLGQIIQLGRANFEKEADRRIQWGWTAYVKLRHILNSAIPQCLKTKVFNACVLPVMTYGAETWTLTVGLVRKLKVAQRAMERCMLGVSLMDRVRNDEIRQRTKVTDIVLKVSKLKWQWAGHTCRRTDGRADVFWTGDRVPVNAALGVPLPVGPMTCGDMLGEIGCGRRRIAHCGGLWERPTSSSGETQADDDDDILHNFLMFFLAGLFGSVFMLVSKVL

Uniprot

D7F166   D7F157   D7F160   D7F165   D7F164   D7F159   + More
D7F158   A0A2H1VS24   A0A2W1BZV1   D7F176   D7F179   A0A023EWU8   A0A0P4VWD0   A0A023EXV2   A0A0N5C0B1   A0A016S1D2   A0A0K0FAW8   A0A016TK11   A0A016SG46   A0A016W4R1   D7F177   A0A2H1WF27   A0A016WPY4   D7F178   A0A2H2JFN0   A0A016WCB8   A0A016ULU9   E3MH09   E3NC15   A0A016VVN3   A0A016S795   A0A016WA79   A0A016V419   A0A016S5B2   A0A069DZM5   K7IG36   K7IG35   K7I2A1   A0A016T7J7   K7I2A2   K7ICT1   K7ICT2   K7I2A3   A0A2H2J8I4   A0A069DX96   K7H0Q8   K7IBZ5   K7IBZ6   K7H0Q9   K7H0R0   K7HDM3   A0A2H2JKG1   K7HDM2   A0A2H2JKX8   A0A2H2JCS8   G0MZ46   Q9TZX4   A0A016V4Q8   A0A2H2ITH9   A0A2H2J2F1   A0A016THC6   A0A016UY78   A0A016WFS9   A0A016RUR3   E3N0F4   A0A016V007   A0A016S403   A0A016TQJ1   A0A016V9Q8   A0A016U6B7   A0A016X207   A0A016VLP0   A0A016W1X2   A0A016SCL7   A0A016WYN9   A0A016WUN2   A0A016T4C4   A0A016SY13   A0A016VT25   A0A016UJS4   E3NJQ7   A0A016SPR9   A0A016SCZ8   A0A016T590   A0A016V6A2   A0A016RV73   A0A016U784   A0A016WQM8   A0A016TX70   A0A016S7F6   A0A016U123  

Pubmed

20470440    28756777    25474469    27129103    25730766    26334808    + More
8603714    9729877   

EMBL

FJ265551    ADI61819.1    FJ265542    ADI61810.1    FJ265545    ADI61813.1    + More
FJ265550    ADI61818.1    FJ265549    ADI61817.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    ODYU01004088    SOQ43598.1    KZ149907    PZC78256.1    FJ265561    ADI61829.1    FJ265564    ADI61832.1    GBBI01004877    JAC13835.1    GDKW01001596    JAI54999.1    GBBI01004876    JAC13836.1    JARK01001655    EYB84321.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001565    EYB89683.1    JARK01001337    EYC34625.1    FJ265562    ADI61830.1    ODYU01008249    SOQ51673.1    JARK01000173    EYC41342.1    FJ265563    ADI61831.1    JARK01000388    EYC37469.1    JARK01001370    EYC16150.1    DS268444    EFP01729.1    DS268591    EFO92565.1    JARK01001340    EYC30828.1    JARK01001621    EYB86109.1    JARK01000460    EYC36749.1    JARK01001354    EYC21986.1    JARK01001626    EYB85833.1    GBGD01000380    JAC88509.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    GBGD01000453    JAC88436.1    GL379822    EGT48339.1    AF054983    AAC72298.1    EYC21713.1    JARK01001438    EYC02111.1    JARK01001359    EYC20105.1    JARK01000302    EYC38674.1    JARK01001711    EYB81734.1    DS268505    EFP13372.1    JARK01001357    EYC20551.1    JARK01001639    EYB85201.1    JARK01001421    EYC04912.1    JARK01001351    EYC23458.1    JARK01001389    EYC10874.1    JARK01000008    EYC46079.1    JARK01001344    EYC28216.1    EYC33297.1    JARK01001628    JARK01001583    JARK01001528    JARK01001506    JARK01001470    JARK01001467    JARK01001463    JARK01001457    JARK01001432    JARK01001420    JARK01001403    JARK01001371    JARK01001369    JARK01001360    JARK01001353    JARK01001349    JARK01000603    JARK01000080    EYB85741.1    EYB88438.1    EYB92544.1    EYB94540.1    EYB98080.1    EYB98468.1    EYB98899.1    EYB99568.1    EYC03088.1    EYC05014.1    EYC08153.1    EYC15852.1    EYC16408.1    EYC19456.1    EYC22445.1    EYC24734.1    EYC24778.1    EYC24866.1    EYC33488.1    EYC35672.1    EYC43798.1    JARK01000063    EYC44387.1    JARK01000109    EYC42952.1    JARK01001475    EYB97550.1    JARK01001497    EYB95322.1    EYC30744.1    JARK01001372    EYC15614.1    DS268752    EFP01106.1    JARK01001531    EYB92324.1    JARK01001581    EYB88505.1    JARK01001473    EYB97806.1    EYC22263.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    EYC11015.1    JARK01000165    EYC41537.1    JARK01001407    EYC07212.1    JARK01001612    EYB86585.1    JARK01001401    EYC08686.1   

Proteomes

UP000046392    UP000024635    UP000035680    UP000005237    UP000008281    UP000008068    + More

PRIDE

D7F166    D7F157    D7F160    D7F165    D7F164    D7F159    + More
D7F158    D7F176    D7F179    D7F177    D7F178   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF03372   Exo_endo_phos
PF00069   Pkinase
PF00201   UDPGT

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR017441   Protein_kinase_ATP_BS       
IPR000719   Prot_kinase_dom       
IPR002213   UDP_glucos_trans       

SUPFAM

SSF56219   SSF56219        + More
SSF56112   SSF56112       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F166   D7F157   D7F160   D7F165   D7F164   D7F159   + More
D7F158   A0A2H1VS24   A0A2W1BZV1   D7F176   D7F179   A0A023EWU8   A0A0P4VWD0   A0A023EXV2   A0A0N5C0B1   A0A016S1D2   A0A0K0FAW8   A0A016TK11   A0A016SG46   A0A016W4R1   D7F177   A0A2H1WF27   A0A016WPY4   D7F178   A0A2H2JFN0   A0A016WCB8   A0A016ULU9   E3MH09   E3NC15   A0A016VVN3   A0A016S795   A0A016WA79   A0A016V419   A0A016S5B2   A0A069DZM5   K7IG36   K7IG35   K7I2A1   A0A016T7J7   K7I2A2   K7ICT1   K7ICT2   K7I2A3   A0A2H2J8I4   A0A069DX96   K7H0Q8   K7IBZ5   K7IBZ6   K7H0Q9   K7H0R0   K7HDM3   A0A2H2JKG1   K7HDM2   A0A2H2JKX8   A0A2H2JCS8   G0MZ46   Q9TZX4   A0A016V4Q8   A0A2H2ITH9   A0A2H2J2F1   A0A016THC6   A0A016UY78   A0A016WFS9   A0A016RUR3   E3N0F4   A0A016V007   A0A016S403   A0A016TQJ1   A0A016V9Q8   A0A016U6B7   A0A016X207   A0A016VLP0   A0A016W1X2   A0A016SCL7   A0A016WYN9   A0A016WUN2   A0A016T4C4   A0A016SY13   A0A016VT25   A0A016UJS4   E3NJQ7   A0A016SPR9   A0A016SCZ8   A0A016T590   A0A016V6A2   A0A016RV73   A0A016U784   A0A016WQM8   A0A016TX70   A0A016S7F6   A0A016U123  

PDB

6AR3     E-value=0.00185318,     Score=102

KEGG

101737796    no KO assigned | (RefSeq) craniofacial development protein 2-like

GO

GO:0003964   GO:0004519   GO:0004672   GO:0005524   GO:0016758  

Length:

1018

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.77751

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00035

outside

1  -  997

TMhelix

998  -  1015

inside

1016  -  1018

 

 

Pi

429.556284

Theta

185.307272

Tajima's D

4.508854

CLR

0.276071

CSRT

0.999950002499875

Interpretation

Uncertain