SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11283  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA002766
Annotation
PREDICTED:_protein_AATF_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.884
 

Sequence

CDS
ATGAAAGCAAAGACTAAGAAATCGGTGAAAATAATGTTATCTGACAAAGTAGCCGACGCACTAACACTAAAGCCACGAGTGGATATCGAAGACGACCAAGTATTTGGCACGAAACCACAAACCGTTTCGCGTGCCGATTTAGGATCTTCGGACAGCGAGGACGAAGCCGCCATCAGTGATTTTCGTAAACGTAACGTTAATTTACTGAGCGAAGTCAGTAAAAAGTACGAAGGTCAAGTAATAACGCGAAAAGATTTGAGTAAGTTTAGTGATGACAGTGATGAGTCTGGAGATGAAAGTGACTATGATAAAACTAGTCAGGATGATAAAGACGGAACCCCTGAAGAAAAAATTACAGACGATGTACTACCAAAAGCACCAGATACTGACTCTGATAATTCATCAGACGGAGAAAGTGATGATTATAGTATTACCAAATTTCAGACAAAAACACAATTGGATGATGATGTTAGCGATGATGATGATGAAGATGAAGATGAAGGTTATGATATAAGTCAACTAGAAGAACCGCTAGTTGAGGATTTCCAACATGTAAAAAAACAAAATATTTCCGAGGAAGCAAAGAAAGGTAACTGTGTAAGAAATCAACTCCTTGTTTGGGAAGGGCTGTTGGAGATGAGGATACACCTGCAGAGATGTGTGAATAGTGCCAATCAAATGCCAATGCCAGAGACATATAATGAACTGAAGAATAGCAATGAATTTGTGGAAGAAAGTAATAATACAAAGTTAAATGTAGCTACAGTTTTAGATAAACTCTTAACACTGCAAAACATACTATTCAATAATTACCCAGAAACTAAAACATTAACCACCAACAAACGATCAGCGGCTCCATCGAAAGTGGAACAGAAACAAGAGAGCGATGAAGAAATACCTAGTGACACTGAAGATGAAGAAATTCCATCTGACACCGAAGAAGATGAATCTCCTGTATCTAAAAATACAAACGAATCGAAAAAGTCCAATGCACCAGCAAACCTTCCAAAGAAACGTAAATTAGATGACTATGAAAAAGAAATTTCAATATCTCATAAAGCCTTCAAACCATTCCGAGATGCATCTATTCAGAAATGGAATGAAAAAACTAGGTTAGCTACAGCATCGAACATTAAAAATGCTCCAACGAACACAGTTCTGCAACAAATTTCATATATCTTATCTGACAGAGATAAATTAATACGAAGAACACAATTAAAAAGAACAGAGTATGATATAGTTGGCTATAGTAAAGCTGTCAACAATGACAATGACTCGGAAAAGGTAACTAAGAACAGGAAAGATGATGATGAATACATACCTGAAATATTTGATGATAATGATTTCTACCATCAGTTATTAAGAGAGTTAATTGAATGTAAGTCTGCTGACATATCTGATCCAGTTCAGCTGAGTAGACAATGGATAGCTCTACAGCAAATGAGGAGTAAGATGAAAAGGAAAGTGGATACTAAAGCTACAAAAGGCCGGAAGATTAAATATGTAGTACACAATCAGCTAGTTAATTACATGGCACCTGAGAAGTGCTTAACATGGACCGAAGAAAGCACGAATGAATTGTACAACTCTTTGTTTGGAAAAATGTTCGAACATAATAATACAGGACTGGGTGGTGATGTAGGAAATATATTTAAATTAAAATAA
Protein
MKAKTKKSVKIMLSDKVADALTLKPRVDIEDDQVFGTKPQTVSRADLGSSDSEDEAAISDFRKRNVNLLSEVSKKYEGQVITRKDLSKFSDDSDESGDESDYDKTSQDDKDGTPEEKITDDVLPKAPDTDSDNSSDGESDDYSITKFQTKTQLDDDVSDDDDEDEDEGYDISQLEEPLVEDFQHVKKQNISEEAKKGNCVRNQLLVWEGLLEMRIHLQRCVNSANQMPMPETYNELKNSNEFVEESNNTKLNVATVLDKLLTLQNILFNNYPETKTLTTNKRSAAPSKVEQKQESDEEIPSDTEDEEIPSDTEEDESPVSKNTNESKKSNAPANLPKKRKLDDYEKEISISHKAFKPFRDASIQKWNEKTRLATASNIKNAPTNTVLQQISYILSDRDKLIRRTQLKRTEYDIVGYSKAVNNDNDSEKVTKNRKDDDEYIPEIFDDNDFYHQLLRELIECKSADISDPVQLSRQWIALQQMRSKMKRKVDTKATKGRKIKYVVHNQLVNYMAPEKCLTWTEESTNELYNSLFGKMFEHNNTGLGGDVGNIFKLK

Summary

Pfam
PF13339   AATF-Che1        + More
PF08164   TRAUB
Interpro
IPR012617   AATF_C        + More
IPR039223   AATF/Bfr2       
IPR025160   AATF       

Ontologies

Topology

Length:
554
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00025
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01846
outside
1  -  554
 
 

Population Genetic Test Statistics

Pi
169.286351
Theta
172.506095
Tajima's D
-0.357101
CLR
0.458669
CSRT
0.275386230688466
Interpretation
Uncertain
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