SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11268
Pre Gene Modal
BGIBMGA012644
Annotation
PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.266
 

Sequence

CDS
ATGCGCGAGGAGGAGCTGGAGGTGGCCCTGAAGGTGGTGATCGTCGGTGACGGCGGAGTCGGCAAGTCCAGTATGATACAGCGCTACTGCCGCGGCACCTTCACCAGGGACTACAAGAAGACCATCGGGGTCGACTTTCTTGAGAGACAGATCGAGATAGACGGCGAGGAAGTCCGACTGATGCTGTGGGACACGGCGGGCCAGGAGGAGTTCGACGCGATCACCAAGGCGTACTACCGCGGCGCCCACGCCTGCGTGCTCGCCTTCTCCACAACCGACCGAGACTCTTTCTTAGCGCTGCACTCCTGGAAGTTGAAAGTAAGTCTGTCTTATGCTCGGATGAATACAGTAGTAGTTCTTGACAACAGTGATCCGTGA
Protein
MREEELEVALKVVIVGDGGVGKSSMIQRYCRGTFTRDYKKTIGVDFLERQIEIDGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVSLSYARMNTVVVLDNSDP

Summary

EMBL
BABH01038906    BABH01038907    KQ459053    KPJ04039.1    AGBW02009975    OWR49440.1    + More
KQ461073    KPJ09570.1    KZ149982    PZC75773.1    KY563815    ASO76338.1    KQ971354    EFA07061.1    JTDY01000937    KOB75368.1    APGK01036247    APGK01036248    APGK01036249    APGK01036250    BT127669    KB740937    KB631668    AEE62631.1    ENN77764.1    ERL85155.1    GEZM01041973    JAV80081.1    ABLF02031457    AK339845    BAH70556.1    GGMS01007345    MBY76548.1    NEVH01015306    PNF27081.1    KK853035    KDR12233.1    ODYU01002616    SOQ40345.1    GDHC01005650    JAQ12979.1    GECU01021676    JAS86030.1    GEBQ01025935    JAT14042.1    GECZ01004740    JAS65029.1    GGMR01014708    MBY27327.1    GDKW01000346    JAI56249.1    ACPB03020901    GAHY01000652    JAA76858.1    GBBI01000787    JAC17925.1    KT984801    AMZ00353.1    GBHO01008668    GBRD01010339    GDHC01018430    JAG34936.1    JAG55485.1    JAQ00199.1    GL444277    EFN61043.1    KQ978023    KYM98070.1    GL888439    EGI60845.1    KQ976725    KYM76622.1    GL446201    EFN88270.1    ADTU01016033    ADTU01016034    QOIP01000011    RLU16765.1    KZ288386    PBC26482.1    JH817566    EKC36223.1    GANO01000976    JAB58895.1    GALX01005796    JAB62670.1    KB199650    ESP05283.1    QUSF01000002    RLW12354.1    NNAY01001882    OXU22651.1    GAKP01003500    JAC55452.1    GECU01005167    JAT02540.1    GDHF01032539    GDHF01031349    GDHF01021756    JAI19775.1    JAI20965.1    JAI30558.1    GGFJ01009024    MBW58165.1    CH477220    EAT47357.1    JXUM01021594    KQ560606    KXJ81643.1    GBXI01014648    JAC99643.1    GGFL01002124    MBW66302.1    GGFL01002125    MBW66303.1    GGFK01011862    MBW45183.1    GGFL01002158    MBW66336.1    GGFL01005658    MBW69836.1    ABQF01001020    RJVU01061435    ROJ36049.1    APCN01001891    AAAB01008834    EAA05694.4    AXCM01000524    AXCN02002308    GFDL01007002    JAV28043.1    DS232228    EDS37911.1    ADMH02000695    ETN65287.1    KK719242    KFO62183.1    AGTO01010618    BX004843    BC095213    BC164825    AAH95213.1    AAI64825.1    JRES01000301    KNC32579.1    AERX01006384    AERX01006385    QRBI01000099    RMC17474.1    JXJN01020691    CVRI01000042    CRK95532.1    CCAG010022856    EU176872    ABW24032.1    GCES01035444    JAR50879.1    JH431644    KL229652    KFV04834.1   
Pfam
PF00071   Ras
Interpro
IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR020849   Small_GTPase_Ras-type       
IPR034114   Rab23       
SUPFAM
SSF52540   SSF52540       
PDB
1Z2A     E-value=1.95795e-37,     Score=384

Ontologies

Topology

Length:
125
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01215
Exp number, first 60 AAs:
0.01013
Total prob of N-in:
0.07867
outside
1  -  125
 
 

Population Genetic Test Statistics

Pi
40.242989
Theta
41.709641
Tajima's D
0.672142
CLR
4.213874
CSRT
0.561421928903555
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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