Gene

KWMTBOMO11268

Pre Gene Modal

BGIBMGA012644

Annotation

PREDICTED:_ras-related_protein_Rab-23-like_[Bombyx_mori]

Location

Bomo_Chr19(-):2193991-2196029      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.266

CDS

ATGCGCGAGGAGGAGCTGGAGGTGGCCCTGAAGGTGGTGATCGTCGGTGACGGCGGAGTCGGCAAGTCCAGTATGATACAGCGCTACTGCCGCGGCACCTTCACCAGGGACTACAAGAAGACCATCGGGGTCGACTTTCTTGAGAGACAGATCGAGATAGACGGCGAGGAAGTCCGACTGATGCTGTGGGACACGGCGGGCCAGGAGGAGTTCGACGCGATCACCAAGGCGTACTACCGCGGCGCCCACGCCTGCGTGCTCGCCTTCTCCACAACCGACCGAGACTCTTTCTTAGCGCTGCACTCCTGGAAGTTGAAAGTAAGTCTGTCTTATGCTCGGATGAATACAGTAGTAGTTCTTGACAACAGTGATCCGTGA

Protein

MREEELEVALKVVIVGDGGVGKSSMIQRYCRGTFTRDYKKTIGVDFLERQIEIDGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVSLSYARMNTVVVLDNSDP

Uniprot

H9JSY2   A0A194QF45   A0A212F6T1   A0A194QX90   A0A2W1BVI8   A0A222AIZ2   + More
D6WRN4   A0A0L7LIH6   J3JWQ1   A0A1Y1M3N4   C4WRN6   A0A2S2QFN0   A0A2J7QER9   A0A067R0K1   A0A2H1VHP0   A0A146M0M0   A0A1B6IGI0   A0A1B6KRG3   A0A1B6GRJ4   A0A1W4X3Q8   A0A2S2PD02   A0A0P4VMA0   R4G8N7   A0A023F8Z6   A0A165VFY4   A0A0A9YTJ0   K7J5H1   A0A3Q0IQI9   E2AZR4   A0A195CBJ6   F4WY88   A0A195AX51   E2B7Q7   A0A158NHS1   A0A3L8D8F4   A0A2A3E5B8   K1QR50   U5EVL0   V5FYB7   V4B4A1   A0A1S3IEG9   A0A3L8SZK5   A0A232EWF1   A0A034WM63   A0A3B4A1H8   A0A1B6JTP9   A0A0K8U3Q5   A0A3B5LX33   A0A2M4BYK0   Q17KZ8   A0A182GYX6   A0A0A1WKS7   A0A2M4CLT6   A0A2M4CLZ3   A0A2M4AWL3   A0A2M4CLX6   A0A2M4CWX9   H0ZRC9   A0A3N0XTE7   A0A182P027   A0A182WES8   A0A182UX90   A0A182TUU9   A0A182LP37   A0A182X2N4   A0A182HN94   Q7QGJ4   A0A182LRA3   A0A182RY17   A0A182MXS1   A0A182QPU5   A0A1Q3FKN0   A0A182Y606   B0X036   W5JLP2   A0A1I8MPK8   A0A182FU70   A0A3Q0SUN0   A0A1A9ZZZ2   A0A182JC48   A0A091EWC5   U3JG74   B8A453   Q503R5   A0A1A9YCT5   A0A0L0CM89   I3JTP9   A0A3M0L115   A0A1B0BUG5   A0A1J1I7H6   A0A1A9V7X4   A0A1B0G9L8   A0A1I8P1C7   A8VIF4   A0A146Y9R8   T1IX75   A0A3Q3M9G5   A0A3B3XIN4   A0A093BVE0   A0A3B4GXQ9  

Pubmed

19121390    26354079    22118469    28756777    18362917    19820115    + More
26227816    22516182    23537049    28004739    24845553    26823975    27129103    25474469    25401762    20075255    20798317    21719571    21347285    30249741    22992520    23254933    30282656    28648823    25348373    25463417    17510324    26483478    25830018    20360741    20966253    12364791    14747013    17210077    25244985    20920257    23761445    25315136    23594743    26108605    25186727    17937392   

EMBL

BABH01038906    BABH01038907    KQ459053    KPJ04039.1    AGBW02009975    OWR49440.1    + More
KQ461073    KPJ09570.1    KZ149982    PZC75773.1    KY563815    ASO76338.1    KQ971354    EFA07061.1    JTDY01000937    KOB75368.1    APGK01036247    APGK01036248    APGK01036249    APGK01036250    BT127669    KB740937    KB631668    AEE62631.1    ENN77764.1    ERL85155.1    GEZM01041973    JAV80081.1    ABLF02031457    AK339845    BAH70556.1    GGMS01007345    MBY76548.1    NEVH01015306    PNF27081.1    KK853035    KDR12233.1    ODYU01002616    SOQ40345.1    GDHC01005650    JAQ12979.1    GECU01021676    JAS86030.1    GEBQ01025935    JAT14042.1    GECZ01004740    JAS65029.1    GGMR01014708    MBY27327.1    GDKW01000346    JAI56249.1    ACPB03020901    GAHY01000652    JAA76858.1    GBBI01000787    JAC17925.1    KT984801    AMZ00353.1    GBHO01008668    GBRD01010339    GDHC01018430    JAG34936.1    JAG55485.1    JAQ00199.1    GL444277    EFN61043.1    KQ978023    KYM98070.1    GL888439    EGI60845.1    KQ976725    KYM76622.1    GL446201    EFN88270.1    ADTU01016033    ADTU01016034    QOIP01000011    RLU16765.1    KZ288386    PBC26482.1    JH817566    EKC36223.1    GANO01000976    JAB58895.1    GALX01005796    JAB62670.1    KB199650    ESP05283.1    QUSF01000002    RLW12354.1    NNAY01001882    OXU22651.1    GAKP01003500    JAC55452.1    GECU01005167    JAT02540.1    GDHF01032539    GDHF01031349    GDHF01021756    JAI19775.1    JAI20965.1    JAI30558.1    GGFJ01009024    MBW58165.1    CH477220    EAT47357.1    JXUM01021594    KQ560606    KXJ81643.1    GBXI01014648    JAC99643.1    GGFL01002124    MBW66302.1    GGFL01002125    MBW66303.1    GGFK01011862    MBW45183.1    GGFL01002158    MBW66336.1    GGFL01005658    MBW69836.1    ABQF01001020    RJVU01061435    ROJ36049.1    APCN01001891    AAAB01008834    EAA05694.4    AXCM01000524    AXCN02002308    GFDL01007002    JAV28043.1    DS232228    EDS37911.1    ADMH02000695    ETN65287.1    KK719242    KFO62183.1    AGTO01010618    BX004843    BC095213    BC164825    AAH95213.1    AAI64825.1    JRES01000301    KNC32579.1    AERX01006384    AERX01006385    QRBI01000099    RMC17474.1    JXJN01020691    CVRI01000042    CRK95532.1    CCAG010022856    EU176872    ABW24032.1    GCES01035444    JAR50879.1    JH431644    KL229652    KFV04834.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000007266    UP000037510    + More
UP000019118    UP000030742    UP000007819    UP000235965    UP000027135    UP000192223    UP000015103    UP000002358    UP000079169    UP000000311    UP000078542    UP000007755    UP000078540    UP000008237    UP000005205    UP000279307    UP000242457    UP000005408    UP000030746    UP000085678    UP000276834    UP000215335    UP000261520    UP000261380    UP000008820    UP000069940    UP000249989    UP000007754    UP000075885    UP000075920    UP000075903    UP000075902    UP000075882    UP000076407    UP000075840    UP000007062    UP000075883    UP000075900    UP000075884    UP000075886    UP000076408    UP000002320    UP000000673    UP000095301    UP000069272    UP000261340    UP000092445    UP000075880    UP000052976    UP000016665    UP000000437    UP000092443    UP000037069    UP000005207    UP000269221    UP000092460    UP000183832    UP000078200    UP000092444    UP000095300    UP000265000    UP000261660    UP000261480    UP000261460   

PRIDE

H9JSY2   

Pfam

PF00071   Ras

Interpro

IPR027417   P-loop_NTPase        + More
IPR001806   Small_GTPase       
IPR005225   Small_GTP-bd_dom       
IPR020849   Small_GTPase_Ras-type       
IPR034114   Rab23       

SUPFAM

SSF52540   SSF52540       

CDD

cd04106  Rab23_like

ProteinModelPortal

H9JSY2   A0A194QF45   A0A212F6T1   A0A194QX90   A0A2W1BVI8   A0A222AIZ2   + More
D6WRN4   A0A0L7LIH6   J3JWQ1   A0A1Y1M3N4   C4WRN6   A0A2S2QFN0   A0A2J7QER9   A0A067R0K1   A0A2H1VHP0   A0A146M0M0   A0A1B6IGI0   A0A1B6KRG3   A0A1B6GRJ4   A0A1W4X3Q8   A0A2S2PD02   A0A0P4VMA0   R4G8N7   A0A023F8Z6   A0A165VFY4   A0A0A9YTJ0   K7J5H1   A0A3Q0IQI9   E2AZR4   A0A195CBJ6   F4WY88   A0A195AX51   E2B7Q7   A0A158NHS1   A0A3L8D8F4   A0A2A3E5B8   K1QR50   U5EVL0   V5FYB7   V4B4A1   A0A1S3IEG9   A0A3L8SZK5   A0A232EWF1   A0A034WM63   A0A3B4A1H8   A0A1B6JTP9   A0A0K8U3Q5   A0A3B5LX33   A0A2M4BYK0   Q17KZ8   A0A182GYX6   A0A0A1WKS7   A0A2M4CLT6   A0A2M4CLZ3   A0A2M4AWL3   A0A2M4CLX6   A0A2M4CWX9   H0ZRC9   A0A3N0XTE7   A0A182P027   A0A182WES8   A0A182UX90   A0A182TUU9   A0A182LP37   A0A182X2N4   A0A182HN94   Q7QGJ4   A0A182LRA3   A0A182RY17   A0A182MXS1   A0A182QPU5   A0A1Q3FKN0   A0A182Y606   B0X036   W5JLP2   A0A1I8MPK8   A0A182FU70   A0A3Q0SUN0   A0A1A9ZZZ2   A0A182JC48   A0A091EWC5   U3JG74   B8A453   Q503R5   A0A1A9YCT5   A0A0L0CM89   I3JTP9   A0A3M0L115   A0A1B0BUG5   A0A1J1I7H6   A0A1A9V7X4   A0A1B0G9L8   A0A1I8P1C7   A8VIF4   A0A146Y9R8   T1IX75   A0A3Q3M9G5   A0A3B3XIN4   A0A093BVE0   A0A3B4GXQ9  

PDB

1Z2A     E-value=1.95795e-37,     Score=384

KEGG

101746249    K06234 Ras-related protein Rab-23 | (RefSeq) ras-related protein Rab-23-like

GO

GO:0003924   GO:0005525   GO:0019003   GO:0005886   GO:0007265   GO:0016021   GO:0035469   GO:0003140   GO:0071910   GO:0061371   GO:0045335   GO:0005776   GO:0005829   GO:0046039   GO:0060271   GO:0000045   GO:0042308   GO:0006968   GO:0005813   GO:0030054   GO:0097094   GO:0010008   GO:0032482   GO:0006886   GO:0007264   GO:0016920   GO:0003735   GO:0006412   GO:0015935   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR24070  

Length:

125

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01215

Exp number, first 60 AAs:

0.01013

Total prob of N-in:

0.07867

outside

1  -  125

 

 

Pi

40.242989

Theta

41.709641

Tajima's D

0.672142

CLR

4.213874

CSRT

0.561421928903555

Interpretation

Uncertain