Gene

KWMTBOMO11259

Pre Gene Modal

BGIBMGA004685

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):2074631-2077789      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.802

CDS

ATGGACAGGTTACATAATACGTTTGGGATAACGAATAGGGCGTCGCCGCGAAACGACGCGCAGAAATATCGCCCTACATCTGCGAACAATATACTAGGGCTACCGAGTCATGGACGGGCTCGGCTAATGAAGTTAGTCCCAAATTGTAGCCTGAAATTCCGCTTCGCTACATTGAATGTTGGAACACTAACGGGGAAGACAAAGGAACTTGCTTCACTCTTCAAGCGTAGAAAGGTAGATTTCGCTTGCCTTCAAGAAACCAGATGGACTGGTGCAAAAGCCCTTAACATCGGAGAAAGCTACAAACTCATGTATGTAGGCGCTAGGCATGGAAGAAATGGTGTAGCAATCGCTGTCAAAGCCGAACACCTCGAAAACTTCTTAGAAGTAAATCGAATTAACGACAGGCTGATGTCTCTAAAAGTACTTGTTGAAGGGGAAGTCATAAATGTGATATCAGCTTATGCTCCCCAGGCGGGTTGTAGCAGGGCTGAAAAAGATAGTTTTTGGACAACTTTGGAAGATCATCTACGCCAAATACCTTCGAAGGAGACAATGCTGTTGGGTGGGGACTTAAACGGTCACATAGGGACAGAAAATAAGGCCTTTAAAAGAGTGCACGGAGGTCATGGATTTGGCACTATAAACGAGGAGGGGGAAGTTATTCTTTCAACAGCTGCTGCATTTGATCTTGCTATAACAAATACTTTCTTTGCTAAAAAGCCAGAACATACAATTACATACAAAAGTGGACAAACAACATCGCAGATAGACTATATATTAGTAAATCGAGCTTACATAGGCCGGGTAACAAATTGCAAGGTCATCCCGGGAGAATGCGCCGTTACTCAACATCGTATCGTTGTAATGGATATGCTTTTTAAGAAAACATCTAAAACTAAAACATCTCACACTCCGGAAATAACCAAATGGTGGAACTTAAAAGGAGATAAGATCCCCGAATTCTGTAACCATCTGAGCAACTTGAAAGTTGATACTGAGTTGGATATTGACAATATATGGGATCACCTTAGCAAATCCATTGTAAAAGCTGGTAATATTACTCTTGGTCGTACAAAAGGTGGTAGAATAAACAATAAAGAGACTTGGTGGTGGACAGAAGCAGTACAAAATGCCATTCAAAAGAAAAAAGATGCCTTTAAGACCTGGCAGTCCACCCAAACTTCTGAAGACCAAGAAAGATATAAAAGAATAAAGAAGGAGACTAAGAAAATAGTGGCAGTGGAGCGCGCAGTTGCCCTAAAGACCATGTACGAGCAACTGGAAACAAAAGAAGGTCAAAAATGTATATTTAAGCTCGCTAAACAGCGTTGTTGGAGCACGAGGGATCCCACTAGATGTCGGGCTGTTAAAGATCCAAATGGTGAGCTTCTGTATGGGGATAGTGATGTACTATCAGCTTGGCATCAATATTATGAACAGCTACTAAACCCTACTCAAGCTGCTATACAGTTAACAAAAGTGGGCAGGAACATTGGACTTATACCTCCAATACGTCCAAATGAGGTCAAAATGGCGTTAGAAAAGATGGCCAACAAGAAAGCCACGGGACCGGACGGTATTCCAGTGGAAGCTTGGAAGTGCCTTCGTGAGCACGGAATCGAAACGCTCACCAAACTTTTCAACTGTGTGTTGCGCTCTTCCAAAATGCCAGCGGCGTGGAGATTGAGCACCATAGTTCCTATTTATAAGGGGAAGGGCAGTAAGTACGAATGTAACAACTATCGCGGGATCAAGCTGTTAAGCCATACTATGAAACTGTATGAAGGAGTGATTGACAGCCGCCTAAGATCAGAGTGTTCACTATCCAAAAATCACTATGGTTTTGTACAGGGCTTATCTACCACCGACCCTATGTTTGCTCTAAATACGATCGCTGAGGAGTATCGTGAGAAACTTCGGCCATTGTATGTCGCATTCTTAGACATGGAAAAGGCATTTGACCGTGTGCCAAGAGATACGATCTGGTGGAGCCTTCGCAAGAAGATTGTACCCGAACATTATGTTAACGTCATAATTGACATGTACAGGGATGCGAGGTCAATGGTACGGACAGTAGTGGGTCAGACAAAACCAATAGCAGTTGCAGAAGGTCTGCATCAAGGTTCAGTACTGAGTCCCTTTCTGTTCGGCATGGTTATAGACTCACTCACTGAGGTGGCGCAGTCCTCAGCCTCGTGGACTTTCATCTATGCAGACGACGTTGCTATCTGCACCGAGAGCCGCACAAAGCTACGAGAGGCACTCCTGTTGTGGAAACAGCAGTTACAAGCCGGTGGCCTAATATTGAGTGTTGCGAAGACACATTACATGTCTTTTAATGACCCAGATCCAGGTGACAACAGTCCGATTTCCATTGACGGTCAACTTGTAAACATGTGCGATCAATACAAGTATCTGGGTACTATGATGCACAGATCTGGAAATTTAAAATGCAACATTCAACACCGAATAGCCGCAGCATGGCTAAAATGGCGAGAAGTAAGTGGTGTCACCTGCGATAGGAGGATGCCCGTTAAGCTCAAGGGTATGATCTATAAGACTATAATAAGGCCTGTTCTTATGTATGGCAGCGAAACATGGGCGGCAACCAAAAGGAACGTACATACCATTCAAGTTGCTGAAATGAAAATGCTGAGGTGGATGTGCGGCGTGACTAGGCTCGATAAAATCCGCAACGAGTACGTGCGTGGAAGTCTAGGTGTACGGGACATCGCCGACAAGATGCAGGAGAGTAGGCTGAGATGGTATGGTCACGTGAAAAGGAAGCAACCTGACTACGTCGGAAATTTGGCGCTACTGCTCGACCTCCCCGGTCGGAGACCTAGAGGCAGACCCAAGACAAGGTGGAGGGACGTAGTGCTGAAGGACAAGAGAGAATGCAATGTTGCTGACGAGGATGTCGAAGACAGAGCGAAGTGGAGGAGTAAAGTCAGGAAAGCTGACCCCACCACCATGTGGGATAAATAG

Protein

MDRLHNTFGITNRASPRNDAQKYRPTSANNILGLPSHGRARLMKLVPNCSLKFRFATLNVGTLTGKTKELASLFKRRKVDFACLQETRWTGAKALNIGESYKLMYVGARHGRNGVAIAVKAEHLENFLEVNRINDRLMSLKVLVEGEVINVISAYAPQAGCSRAEKDSFWTTLEDHLRQIPSKETMLLGGDLNGHIGTENKAFKRVHGGHGFGTINEEGEVILSTAAAFDLAITNTFFAKKPEHTITYKSGQTTSQIDYILVNRAYIGRVTNCKVIPGECAVTQHRIVVMDMLFKKTSKTKTSHTPEITKWWNLKGDKIPEFCNHLSNLKVDTELDIDNIWDHLSKSIVKAGNITLGRTKGGRINNKETWWWTEAVQNAIQKKKDAFKTWQSTQTSEDQERYKRIKKETKKIVAVERAVALKTMYEQLETKEGQKCIFKLAKQRCWSTRDPTRCRAVKDPNGELLYGDSDVLSAWHQYYEQLLNPTQAAIQLTKVGRNIGLIPPIRPNEVKMALEKMANKKATGPDGIPVEAWKCLREHGIETLTKLFNCVLRSSKMPAAWRLSTIVPIYKGKGSKYECNNYRGIKLLSHTMKLYEGVIDSRLRSECSLSKNHYGFVQGLSTTDPMFALNTIAEEYREKLRPLYVAFLDMEKAFDRVPRDTIWWSLRKKIVPEHYVNVIIDMYRDARSMVRTVVGQTKPIAVAEGLHQGSVLSPFLFGMVIDSLTEVAQSSASWTFIYADDVAICTESRTKLREALLLWKQQLQAGGLILSVAKTHYMSFNDPDPGDNSPISIDGQLVNMCDQYKYLGTMMHRSGNLKCNIQHRIAAAWLKWREVSGVTCDRRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQVAEMKMLRWMCGVTRLDKIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKQPDYVGNLALLLDLPGRRPRGRPKTRWRDVVLKDKRECNVADEDVEDRAKWRSKVRKADPTTMWDK

Uniprot

D7F169   C6Y4D5   A0A3Q1JCX2   A0A3P9M3S5   A0A3B3HEZ2   A0A3P9KU10   + More
A0A3B3IEV4   A0A3B3HU59   A0A3B3HPV6   A0A016S5A7   A0A3B3HQS3   A0A3B3H644   A0A3B3HIQ7   A0A3B3IP13   A0A3B3HVG5   A0A3B3H5C8   A0A3B3HFD6   A0A3P9LQU2   A0A3B3H3Q1   A0A3B3H9R1   A0A3P9K813   A0A3P9KEZ0   A0A3P9MI82   A0A3P9LFN7   A0A3B3HQ01   A0A3B3IJZ5   A0A3B3HP42   A0A3B3H9R7   A0A3B3HMM1   A0A3B3IJY6   A0A3P9HXH1   A0A3B3HYL2   A0A3P9LF91   A0A3B3HV05   A0A3P9MAU2   A0A3B3HGI6   A0A3P9K1J1   A0A3B3I0B4   A0A3B3IIV8   A0A3B3HKS7   A0A3B3I4X3   A0A3B3HXS2   A0A3B3HUW2   A0A3B3IQ24   A0A3P9JZH0   A0A3B3HLA9   A0A3B3HQU7   A0A016TB11   A0A016TBY7   A0A3P9L7K7   A0A3P9IBY4   A0A3B3ICX9   A0A3B3HQ23   A0A3B3H879   A0A3B3IBX6   A0A3B3HKQ9   A0A016X4X8   A0A016WMG6   A0A016U5E2   A0A3B3IM62   A0A3B3IMV3   A0A3B3HKV3   A0A3B3HJN2   A0A3B3HQW9   A0A3P9GYG2   A0A3B3IL83   A0A3B3INX9   A0A3B3HW87   A0A3P9JLN9   A0A016UEE9   A0A3B3HS69   A0A3B3I6A1   A0A3B3I5K2   A0A3B3I6R5   A0A3B3I9A4   A0A3B3HGK1   A0A3B3HQP1   A0A3B3I3F2   A0A016WTX6   A0A3B3HT45   A0A3P9HCZ5   A0A3B3HJZ3   A0A3P9MCH9   A0A3P9M4S0   A0A3B3HYL7   A0A3B3IDD8   A0A3B3HZW4   A0A016VG09   A0A3Q1JGK5   A0A3B3ILX4   A0A3B3IC09   A0A3B3HEM1   A0A3B3H5B4   A0A2A4IZ11   A0A3Q1HIZ5   A0A3B3H3C9   A0A3B3IEM9   A0A3B3I2L1   A0A016X4U3   A0A3B3IFB5  

Pubmed

20470440    17554307    25730766   

EMBL

FJ265554    ADI61822.1    CU462842    CBA11992.1    JARK01001626    EYB85828.1    + More
JARK01001455    EYB99857.1    JARK01001453    EYC00158.1    JARK01000002    EYC46303.1    JARK01000211    EYC40457.1    JARK01001391    EYC10519.1    JARK01001380    EYC13301.1    JARK01000103    EYC43100.1    JARK01001346    EYC26231.1    NWSH01004369    PCG65177.1    EYC46273.1   

Proteomes

UP000265040    UP000265180    UP000001038    UP000024635    UP000265200    UP000218220    + More

PRIDE

D7F169   

Pfam

PF00078   RVT_1        + More
PF03372   Exo_endo_phos

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F169   C6Y4D5   A0A3Q1JCX2   A0A3P9M3S5   A0A3B3HEZ2   A0A3P9KU10   + More
A0A3B3IEV4   A0A3B3HU59   A0A3B3HPV6   A0A016S5A7   A0A3B3HQS3   A0A3B3H644   A0A3B3HIQ7   A0A3B3IP13   A0A3B3HVG5   A0A3B3H5C8   A0A3B3HFD6   A0A3P9LQU2   A0A3B3H3Q1   A0A3B3H9R1   A0A3P9K813   A0A3P9KEZ0   A0A3P9MI82   A0A3P9LFN7   A0A3B3HQ01   A0A3B3IJZ5   A0A3B3HP42   A0A3B3H9R7   A0A3B3HMM1   A0A3B3IJY6   A0A3P9HXH1   A0A3B3HYL2   A0A3P9LF91   A0A3B3HV05   A0A3P9MAU2   A0A3B3HGI6   A0A3P9K1J1   A0A3B3I0B4   A0A3B3IIV8   A0A3B3HKS7   A0A3B3I4X3   A0A3B3HXS2   A0A3B3HUW2   A0A3B3IQ24   A0A3P9JZH0   A0A3B3HLA9   A0A3B3HQU7   A0A016TB11   A0A016TBY7   A0A3P9L7K7   A0A3P9IBY4   A0A3B3ICX9   A0A3B3HQ23   A0A3B3H879   A0A3B3IBX6   A0A3B3HKQ9   A0A016X4X8   A0A016WMG6   A0A016U5E2   A0A3B3IM62   A0A3B3IMV3   A0A3B3HKV3   A0A3B3HJN2   A0A3B3HQW9   A0A3P9GYG2   A0A3B3IL83   A0A3B3INX9   A0A3B3HW87   A0A3P9JLN9   A0A016UEE9   A0A3B3HS69   A0A3B3I6A1   A0A3B3I5K2   A0A3B3I6R5   A0A3B3I9A4   A0A3B3HGK1   A0A3B3HQP1   A0A3B3I3F2   A0A016WTX6   A0A3B3HT45   A0A3P9HCZ5   A0A3B3HJZ3   A0A3P9MCH9   A0A3P9M4S0   A0A3B3HYL7   A0A3B3IDD8   A0A3B3HZW4   A0A016VG09   A0A3Q1JGK5   A0A3B3ILX4   A0A3B3IC09   A0A3B3HEM1   A0A3B3H5B4   A0A2A4IZ11   A0A3Q1HIZ5   A0A3B3H3C9   A0A3B3IEM9   A0A3B3I2L1   A0A016X4U3   A0A3B3IFB5  

PDB

1VYB     E-value=5.04226e-05,     Score=115

KEGG

105842995    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0004519  

Length:

996

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00634999999999998

Exp number, first 60 AAs:

0.00126

Total prob of N-in:

0.00023

outside

1  -  996

 

 

Pi

232.970496

Theta

161.351979

Tajima's D

1.476154

CLR

0.666054

CSRT

0.780960951952402

Interpretation

Uncertain