SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11258  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012580
Annotation
PREDICTED:_uncharacterized_protein_LOC106136439_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.627
 

Sequence

CDS
ATGGCAGGGTTTCAGGCAAGCGATACTATGCCGAAGTTCGGACACGTAACGGATCTGCGCGAACAGTGGCTTGTGCGCACCGACGGAGCGCTTGCTCATCGTTTGCAAGACCGCGAGATATCTTCTCACCTCTGCGAGAATAGGTATAGAAATCAACAGATCCGCGAAGATTTTCCTGTCGCCGTCAACGAACAGAAAGACCTCGAGCACGAAGCTCGTTTGCGTGAATATTCTCGACGTCGGCAAGCTGAAATAGATGCAGAAATCGCACGTGAGATGGCGGAGATAAATTTACGGAGACAACGTCGTCAACGCAATGAGGATCTCCAGCAACCAAGTTCATCTCGAGCACCTATGAAGACACCTCCCCCTATAGCCTCTGATGACTTAAACCCAGAGGAATTAGGTCTCTCGTCTGCAGAACTAGAGGAGATAAGAAGACGCATGGAACAAGAAGAAAGAGACGCAAGGCTTGCTAGAGAGCTGAGTCATGAAGCAAATGACCGTGATGCACTCCTCACTGACATGAAGTATGCTGTAGAAGCACAGGATGGTGAATTAGCCAGGTTATTACAAGAAAGGGAATATAAAAAATTGCAACGAGCAAAAGAAAAAGCCAGACAGAAAGCATTGCTAAAGAAGCAGCAGCGTGTAGCGCCACAACAGCATTTACAAAGAGACATTGAATACCCAAGCCCTCCACAGGCTGAACTCTGTGATGCATATAGCAACCCACGAGATATGATTAAGGAAAATCGATTACGTCTTTGTAAATCAGTTGATTCAGATTTGAATTATGTTGAGCCATTTGAGAAAGAACATATTGAGTCTCGAACTAGTGCTTTAAAAGCAAAGGAGTTCTCCAAACAGTATATCACACAAAAGTCTGATGTAGTGAAATCTAATAACAATATTTCAAATTTACAATCCAGATCTTTTGATAACGATAAATGGACTCATAATTCTCCAGTTGGTTTACAGCACAGACACCCGCCCCTTCCTCCATCTACAAGTAAAAAGCCACGATTTCCTGATCCTGTTATCATCCGGCCTGCTTCGCATTATTCTACAGAGGATCCGACAGAAAATGGGTCCAGCAGTCAGAACATATCTCATAGCTTTAGTGAAAATAACAACCTATACAGTTCCACATTTCCATCAGACTTAGGAACTCATTCTAGACTTGCATCAGAAACTCATGACACTTCCAAGAGGTTGTCAGTAATTTCTGATATGACAGCAGATGATTTGGTTAAAAAAAAAAATAAACAAGCTAACAAGGAAAAGAAACGACGCGGTTGTAAAATACAGTAA
Protein
MAGFQASDTMPKFGHVTDLREQWLVRTDGALAHRLQDREISSHLCENRYRNQQIREDFPVAVNEQKDLEHEARLREYSRRRQAEIDAEIAREMAEINLRRQRRQRNEDLQQPSSSRAPMKTPPPIASDDLNPEELGLSSAELEEIRRRMEQEERDARLARELSHEANDRDALLTDMKYAVEAQDGELARLLQEREYKKLQRAKEKARQKALLKKQQRVAPQQHLQRDIEYPSPPQAELCDAYSNPRDMIKENRLRLCKSVDSDLNYVEPFEKEHIESRTSALKAKEFSKQYITQKSDVVKSNNNISNLQSRSFDNDKWTHNSPVGLQHRHPPLPPSTSKKPRFPDPVIIRPASHYSTEDPTENGSSSQNISHSFSENNNLYSSTFPSDLGTHSRLASETHDTSKRLSVISDMTADDLVKKKNKQANKEKKRRGCKIQ

Summary

Pfam
PF15295   CCDC50_N
Interpro
IPR029311   CCDC50_N        + More
IPR039303   CCDC50       

Ontologies

GO

Topology

Length:
437
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00761
outside
1  -  437
 
 

Population Genetic Test Statistics

Pi
191.770581
Theta
218.696165
Tajima's D
-0.344645
CLR
97.67496
CSRT
0.27663616819159
Interpretation
Uncertain
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