Gene

KWMTBOMO11255  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012626

Annotation

ribosomal_protein_S9_[Bombyx_mori]

Location

Bomo_Chr19(+):2039310-2041917      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.594 Mitochondrial   Reliability : 1.532 Nuclear   Reliability : 1.29

CDS

ATGGTGAACAACAGAGTACCGTCGGTATTTTCAAAGACGTACGTGACACCTCGTCGTCCTTTTGAAAAGGCACGTCTTGACCAAGAGTTGAAGATCATCGGAGAGTACGGTCTCCGCAACAAGCGTGAAGTATGGCGCGTCAAATACACGCTCGCTCGTATCCGTAAGGCTGCTCGTGAGCTCCTCACCCTCGAGGAGAAGGACCCCAAGAGATTGTTCGAAGGTAATGCCCTTCTACGTCGTCTGGTTCGTATTGGAGTACTGGATGAAAAACAGATGAAACTCGATTATGTGCTTGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGCAGACGCAGGTGTTCAAAGCTGGCCTGGCGAAGTCCATCCATCATGCCAGAATTTTGATCCGGCAAAGGCATATTCGTGTCCGCAAGCAAGTTGTGAACATCCCATCATTTATTGTGCGCCTGGACTCTGGCAAGCACATTGACTTCTCTCTGAAATCTCCATTCGGTGGAGGTCGTCCTGGACGTGTCAAGAGGAAGAACCTCCGCAAGGGACAGGGTGGCGGAGCCGCCAATGATGAAGAGGAAGATTAA

Protein

MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDEEED

Similarity

Belongs to the universal ribosomal protein uS4 family.

Uniprot

Q5UAN5   G0ZEB2   E7DYZ5   E3UPD4   A0A212F2I5   S4NN00   + More
A0A2W1BRD8   A0A2A4JV76   D1LYL6   A0A3G1T1I7   I4DIF0   A0A0N1PFU4   I4DM72   Q6F433   J3JW42   A0A2A3EPJ7   A0A1W4W479   A0A0C9Q5V9   A0A2J7RAU2   A0A154P305   V9IM38   A0A088AC67   E9IEG2   F4X5V2   A0A151JV98   A0A158NME9   A0A286NL58   E2AAS7   A0A026WG00   A0A0L7RF62   A0A2P8YKV3   E2BRU4   A0A195CC55   A0A0M8ZNF3   R4UJW9   A0A151JLG1   A0A310ST05   A0A067R2M5   V5GVY3   A0A0L0C631   Q56FD6   Q6EUZ7   B4MMU2   B3MAA1   T1D4Y2   Q1HRP3   A0A023EHX1   B5AKB6   A0A1Y1JW63   A0A151I328   A0A3B0JA51   Q29EE2   B4H1W8   A0A034VNP6   A0A0A1X855   Q5I7F7   R4WCY0   A0A2H8TP35   A0A2S2R4T6   W8BT60   I6WH88   J9JKT0   Q5QC95   A0A1B6HTY7   Q1W2C5   A0A232EZT6   K7IMZ0   A0A023EJ38   G8JKF2   A0A1B6CNV1   A0A0A9XGR3   A0A0T6B695   Q0ZBS9   Q0ZBT0   Q0ZBT2   Q0ZBT1   R4G4I6   D6WUV2   Q4GXT2   A0A0L8I1J6   A0A0K8TPM1   I3RZF1   A0A2R5LJ63   A0A069DPT3   U5EMF1   A0A171B948   A2I4A1   A0A182Q9K7   A0A182YJ09   A0A182WB87   A0A023FX31   A0A1Q3G1U3   A0A224YGD1   A0A131YTM0   L7M716   A0A131XLA9   B4KVS5   A0A0U2KEE9   A0A1I8NWT6   A0A1L8EHP5  

Pubmed

19121390    22118469    23622113    28756777    22651552    26354079    + More
22516182    21282665    21719571    21347285    20798317    24508170    30249741    29403074    24845553    26108605    17994087    18057021    24330624    17204158    17510324    24945155    28004739    15632085    23185243    25348373    25830018    16116622    23691247    24495485    22928326    28648823    20075255    22679863    25401762    26823975    16731569    18362917    19820115    26369729    26334808    25244985    28797301    26830274    25576852    28049606    26621068   

EMBL

BABH01035995    AY769323    AAV34865.1    JF264990    AEL28821.1    HQ424698    + More
ADT80642.1    HM536618    ADO95157.1    AGBW02010741    OWR47936.1    GAIX01014156    JAA78404.1    KZ149965    PZC76214.1    NWSH01000613    PCG75302.1    GU084290    ACY95323.1    MG992406    AXY94844.1    AK401068    KQ459449    BAM17690.1    KPJ00885.1    KQ461184    KPJ07524.1    AK402390    BAM19012.1    AB180671    BAD26701.1    BT127460    AEE62422.1    KZ288210    PBC32961.1    GBYB01009493    JAG79260.1    NEVH01006564    PNF37950.1    KQ434796    KZC05618.1    JR052818    AEY61797.1    GL762591    EFZ21050.1    GL888742    EGI58192.1    KQ981706    KYN37422.1    ADTU01020420    ADTU01020421    KX809580    ASZ69801.1    GL438172    EFN69456.1    KK107238    QOIP01000007    EZA54586.1    RLU20156.1    KQ414608    KOC69468.1    PYGN01000522    PSN44878.1    GL450042    EFN81577.1    KQ977957    KYM98444.1    KQ435970    KOX67795.1    KC571875    AGM32374.1    KQ979011    KYN26641.1    KQ760512    OAD60050.1    KK852804    KDR16262.1    GALX01002599    JAB65867.1    JRES01000850    KNC27740.1    AY961563    AY961564    AAX62466.1    AJ783874    CAH04322.1    CH963847    EDW73498.1    CH902618    EDV39115.1    KPU77895.1    KPU77896.1    GALA01000783    JAA94069.1    DQ440051    CH477227    ABF18084.1    EAT47096.1    GAPW01004642    GAPW01004640    JAC08958.1    EU855143    ACF72878.1    GEZM01099013    JAV53572.1    KQ976507    KYM82823.1    OUUW01000002    SPP76862.1    CH379070    EAL30119.1    KRT08658.1    CH699592    CH479203    CH689788    EDW25738.1    EDW30320.1    EDW39426.1    GAKP01015245    JAC43707.1    GBXI01007377    JAD06915.1    AY847002    AAW31599.1    AK417034    BAN20249.1    GFXV01004111    MBW15916.1    GGMS01015785    MBY84988.1    GAMC01002020    JAC04536.1    JQ654782    AFN37233.1    ABLF02012050    AY741681    AAV69398.1    GECU01029587    JAS78119.1    DQ445502    GEBQ01013654    ABD98740.1    JAT26323.1    NNAY01001454    OXU23921.1    GAPW01004641    JAC08957.1    JP593081    AER92466.1    GEDC01022235    JAS15063.1    GBHO01024748    GBHO01024746    GBRD01002184    GDHC01010358    JAG18856.1    JAG18858.1    JAG63637.1    JAQ08271.1    LJIG01009532    KRT82892.1    DQ630941    ABG01899.1    DQ630940    ABG01898.1    DQ630938    ABG01896.1    DQ630939    ABG01897.1    ACPB03005812    GAHY01000741    JAA76769.1    KQ971363    EFA09067.1    AM048941    CAJ17220.1    KQ416764    KOF95368.1    GDAI01001256    JAI16347.1    BT133598    AFK33393.1    GGLE01005457    MBY09583.1    GBGD01003064    JAC85825.1    GANO01001059    JAB58812.1    GEMB01000118    JAS02993.1    EF070604    ABM55670.1    AXCN02000952    AXCN02000953    GBBL01002017    JAC25303.1    GFDL01001258    JAV33787.1    GFPF01005580    MAA16726.1    GEDV01007296    JAP81261.1    GACK01006081    JAA58953.1    GEFH01001631    JAP66950.1    CH933809    EDW18449.1    KT755440    ALS05274.1    GFDG01000686    JAV18113.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000053240    UP000242457    + More
UP000192223    UP000235965    UP000076502    UP000005203    UP000007755    UP000078541    UP000005205    UP000000311    UP000053097    UP000279307    UP000053825    UP000245037    UP000008237    UP000078542    UP000053105    UP000078492    UP000027135    UP000037069    UP000007798    UP000007801    UP000008820    UP000078540    UP000268350    UP000001819    UP000008744    UP000007819    UP000215335    UP000002358    UP000015103    UP000007266    UP000053454    UP000075886    UP000076408    UP000075920    UP000009192    UP000095300   

PRIDE

Q5UAN5    L7M716   

Pfam

PF00163   Ribosomal_S4        + More
PF01479   S4

Interpro

IPR002942   S4_RNA-bd        + More
IPR018079   Ribosomal_S4_CS       
IPR005710   Ribosomal_S4/S9_euk/arc       
IPR036986   S4_RNA-bd_sf       
IPR001912   Ribosomal_S4/S9_N       
IPR022801   Ribosomal_S4/S9       

Gene 3D

3.10.290.10    

CDD

cd00165  S4

ProteinModelPortal

Q5UAN5   G0ZEB2   E7DYZ5   E3UPD4   A0A212F2I5   S4NN00   + More
A0A2W1BRD8   A0A2A4JV76   D1LYL6   A0A3G1T1I7   I4DIF0   A0A0N1PFU4   I4DM72   Q6F433   J3JW42   A0A2A3EPJ7   A0A1W4W479   A0A0C9Q5V9   A0A2J7RAU2   A0A154P305   V9IM38   A0A088AC67   E9IEG2   F4X5V2   A0A151JV98   A0A158NME9   A0A286NL58   E2AAS7   A0A026WG00   A0A0L7RF62   A0A2P8YKV3   E2BRU4   A0A195CC55   A0A0M8ZNF3   R4UJW9   A0A151JLG1   A0A310ST05   A0A067R2M5   V5GVY3   A0A0L0C631   Q56FD6   Q6EUZ7   B4MMU2   B3MAA1   T1D4Y2   Q1HRP3   A0A023EHX1   B5AKB6   A0A1Y1JW63   A0A151I328   A0A3B0JA51   Q29EE2   B4H1W8   A0A034VNP6   A0A0A1X855   Q5I7F7   R4WCY0   A0A2H8TP35   A0A2S2R4T6   W8BT60   I6WH88   J9JKT0   Q5QC95   A0A1B6HTY7   Q1W2C5   A0A232EZT6   K7IMZ0   A0A023EJ38   G8JKF2   A0A1B6CNV1   A0A0A9XGR3   A0A0T6B695   Q0ZBS9   Q0ZBT0   Q0ZBT2   Q0ZBT1   R4G4I6   D6WUV2   Q4GXT2   A0A0L8I1J6   A0A0K8TPM1   I3RZF1   A0A2R5LJ63   A0A069DPT3   U5EMF1   A0A171B948   A2I4A1   A0A182Q9K7   A0A182YJ09   A0A182WB87   A0A023FX31   A0A1Q3G1U3   A0A224YGD1   A0A131YTM0   L7M716   A0A131XLA9   B4KVS5   A0A0U2KEE9   A0A1I8NWT6   A0A1L8EHP5  

PDB

4V6W     E-value=7.74947e-80,     Score=752

KEGG

692718    K02997 small subunit ribosomal protein S9e | (RefSeq) RpS9; ribosomal protein S9

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0015935   GO:0003735   GO:0019843   GO:0006412   GO:0005840   GO:0000228   GO:0005730   GO:0045903   GO:0022627   GO:0003723   GO:0005622   GO:0006811   GO:0006810   GO:0003824  

PANTHER

PTHR11831  

Length:

194

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00155

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08039

outside

1  -  194

 

 

Pi

226.287038

Theta

195.019413

Tajima's D

0.516976

CLR

0.166793

CSRT

0.52162391880406

Interpretation

Uncertain