Gene

KWMTBOMO11251

Pre Gene Modal

BGIBMGA012583

Annotation

PREDICTED:_cleavage_and_polyadenylation_specificity_factor_73_[Bombyx_mori]

Location

Bomo_Chr19(-):2012131-2019369      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.27

CDS

ATGGGCATAGACCACTTTGAGGACATAGGGCCGTGCGTGATCATGGCGTCCCCGGGCATGATGCAGTCGGGACTGTCTCGGGAGCTGTTCGAGTCCTGGTGCACCGACCCTAAGAACGGAGTCATCATAGCGGGTTACTGCGTGGAGGGGACGCTGGCGAAGACGATCCTGTCGGAGCCGGACGAGATTACGACCATGTCCGGCCAGAAGTTGCCGCTGCGGATGTCCGTGGACTACATCTCGTTCTCGGCGCACACCGACTACCAGCAGACCTCGGAGTTCATCAACATCCTGAAGCCGCCGCACGTGGTGCTGGTGCACGGCGAGCAGAACGAGATGTCCCGGCTGCGCGCGGCGCTGGAGCGGGAGCACCGCGGCGCCATCCTCGTGCACACGCCGCGCAACACGCAGCCCCTCGCGCTCTGCTTCCGCGGAGACACCACCGCCAAGGTGATGGGCTCCCTGGCGGTAGACCCTCCCAAGGAAGGTCAGGAGCTGCAGGGCATCCTCGTCAAAAGAAACTTCAATTATCACATTCTGGCGCCCGCAGACCTCAACAAGTACACGGAGCTGGTCCAGTCGGAGGTGACGCAGCGGCAGTCGCTGCAGTACGCGGGCTCGGTCCCGCTGCTGCGCCACGTGCTCATGCAGCTCGCCGGACACATCGACTTCCTCTCGGAGACCAGGTGGCGCCTCTACTCCTGCATCGAGCTCACCATCGAGAGCAGCACCATAGTGCTCGAATGGCGCGCCGGGCCCGTGGCCGACATGTACGCCGACGCGCTGGTGGGCGCCGCGCTGTCCGCCGCCGCGCTCGCCGCGCCCGCCGCCACGCACCCGCCGCTCGCGCCCAAGCTCGACCGCATGCACTTCAAGGAGTGCGTTATAGAAATGTTCCAAGACATGTTCGGTGAAGACTCCGTGCCGAAGATGTTTAAGGGCGACAAGCTGTACGTCACCGTCGACGACAAGCGCGCCGACATCGACCTGCAGAGCATGGAGGTCCGGTGTCCCGAGGAGCCGTCGCTGGCGTCGTGCGTAAGGTCGGCGCTGCAGCACCTGCACGCCGCGTTGTCCCCCGTGCGCCCGCCCCCCGGCGCCCCGCCCCCCGCCGACTCGTGA

Protein

MGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSEPDEITTMSGQKLPLRMSVDYISFSAHTDYQQTSEFINILKPPHVVLVHGEQNEMSRLRAALEREHRGAILVHTPRNTQPLALCFRGDTTAKVMGSLAVDPPKEGQELQGILVKRNFNYHILAPADLNKYTELVQSEVTQRQSLQYAGSVPLLRHVLMQLAGHIDFLSETRWRLYSCIELTIESSTIVLEWRAGPVADMYADALVGAALSAAALAAPAATHPPLAPKLDRMHFKECVIEMFQDMFGEDSVPKMFKGDKLYVTVDDKRADIDLQSMEVRCPEEPSLASCVRSALQHLHAALSPVRPPPGAPPPADS

Uniprot

A0A2A4JX46   A0A2H1VQI7   A0A2W1BTV7   A0A0N1IMS2   A0A0N1IEX9   A0A212F2I2   + More
H9JSS2   A0A232F768   A0A067RDR8   K7J2M9   A0A0L7QWD3   A0A1Y1LBJ4   A0A2J7R5C5   A0A026WY67   A0A0N0U5P0   E2BWA8   E9J3A8   A0A154PS55   A0A0J7KBN9   F4X126   A0A151XD31   A0A195B7C4   A0A158NGY1   A0A195DWF4   A0A195FNY7   U4UDT1   A0A151ID90   A0A2A3EHP0   A0A088A3T2   N6UEA4   A0A1B6DJS3   A0A139WFI0   A0A2P8XPT2   A0A146L7R5   A0A1B6KSK1   A0A1B6ET64   A0A224XKF2   T1HZV1   A0A0A9YYP8   A0A069DVS5   A0A023F454   E2AIH9   A0A0V0G9S7   E0VDY7   A0A1Q3F4J9   Q170J6   B0X8N8   A0A1B0D6R5   T1JIA8   A0A182GPT9   G3MI33   A0A131XG05   A0A1L8DH05   A0A1E1X5Z7   A0A0A1WZH2   A0A2R2MI55   W8CAQ0   L7LUX8   A0A224YLX6   A0A131Z7V5   A0A293M8C0   A0A2P6JZT1   A0A0K8VB67   A0A034VDT8   A0A0P6A4X3   A0A1A9Y9E4   A0A1Z5KU63   A0A1A9ZEA1   V5H4V8   A0A1A9W2T5   B7P2D2   A0A1A9V5Z7   A0A0P5X9B8   A0A1B0FEP4   A0A0P5TCC5   A0A1I8PMY3   A0A087T459   E9H6R0   A0A2R5LL73   A0A0P5BX64   A0A2R7X216   A0A0L0CNN5   A0A1I8PMU4   A0A0N7ZQ71   A0A0P6G968   A0A0P5ZCM9   A0A1B0BGV6   A0A0N8A5S0   A0A0P6DVS9   A0A0P5N5V0   A0A0P4ZLF2   A0A0P5N4F1   A0A336MGA6   B4PLZ5   A0A0P6HMU5   A0A0P5B7F1   Q299N6   B4G5H0   A0A0P6BGC3   A0A336M7S8  

Pubmed

28756777    26354079    22118469    19121390    28648823    24845553    + More
20075255    28004739    24508170    30249741    20798317    21282665    21719571    21347285    23537049    18362917    19820115    29403074    26823975    25401762    26334808    25474469    20566863    17510324    26483478    22216098    28049606    28503490    25830018    24495485    25576852    28797301    26830274    25348373    28528879    25765539    21292972    26108605    17994087    17550304    15632085   

EMBL

NWSH01000411    PCG76587.1    ODYU01003846    SOQ43113.1    KZ149965    PZC76210.1    + More
KQ459449    KPJ00887.1    KQ461184    KPJ07521.1    AGBW02010741    OWR47931.1    BABH01035994    NNAY01000831    OXU26288.1    KK852527    KDR22016.1    KQ414714    KOC62927.1    GEZM01063106    JAV69305.1    NEVH01006994    PNF36035.1    KK107063    QOIP01000005    EZA60982.1    RLU23084.1    KQ435759    KOX75678.1    GL451103    EFN80012.1    GL768061    EFZ12664.1    KQ435041    KZC14174.1    LBMM01010055    KMQ87697.1    GL888525    EGI59837.1    KQ982294    KYQ58286.1    KQ976574    KYM80155.1    ADTU01015321    KQ980204    KYN17240.1    KQ981387    KYN42027.1    KB632095    ERL88751.1    KQ977985    KYM98347.1    KZ288239    PBC31295.1    APGK01025895    KB740605    ENN80045.1    GEDC01011420    JAS25878.1    KQ971352    KYB26686.1    PYGN01001567    PSN34000.1    GDHC01014205    JAQ04424.1    GEBQ01025544    JAT14433.1    GECZ01028698    GECZ01022214    JAS41071.1    JAS47555.1    GFTR01007496    JAW08930.1    ACPB03022312    GBHO01007381    GBHO01007380    GBRD01013468    GDHC01004914    JAG36223.1    JAG36224.1    JAG52358.1    JAQ13715.1    GBGD01000691    JAC88198.1    GBBI01002432    JAC16280.1    GL439791    EFN66769.1    GECL01001986    JAP04138.1    DS235088    EEB11593.1    GFDL01012592    JAV22453.1    CH477473    EAT40345.1    DS232495    EDS42630.1    AJVK01026176    AJVK01026177    JH431327    JXUM01079185    JXUM01079186    JO841534    AEO33151.1    GEFH01003074    JAP65507.1    GFDF01008345    JAV05739.1    GFAC01004544    JAT94644.1    GBXI01010226    JAD04066.1    GAMC01005546    JAC01010.1    GACK01009622    JAA55412.1    GFPF01006809    MAA17955.1    GEDV01002306    JAP86251.1    GFWV01012403    MAA37132.1    MWRG01057186    PRD19578.1    GDHF01016201    JAI36113.1    GAKP01018690    GAKP01018688    JAC40262.1    GDIP01047158    JAM56557.1    GFJQ02008350    JAV98619.1    GANP01006423    JAB78045.1    ABJB010540581    DS621961    EEC00754.1    GDIP01075489    JAM28226.1    CCAG010005922    GDIP01132139    JAL71575.1    KK113334    KFM59898.1    GL732598    EFX72593.1    GGLE01006137    MBY10263.1    GDIP01183278    JAJ40124.1    KK856473    PTY25849.1    JRES01000142    KNC33866.1    GDIP01223369    JAJ00033.1    GDIQ01055463    JAN39274.1    GDIP01045707    GDIQ01036911    LRGB01002993    JAM58008.1    JAN57826.1    KZS05118.1    JXJN01014010    GDIP01179777    JAJ43625.1    GDIQ01072146    JAN22591.1    GDIQ01154215    JAK97510.1    GDIP01211631    JAJ11771.1    GDIQ01151319    JAL00407.1    UFQS01000883    UFQT01000883    SSX07493.1    SSX27833.1    CM000160    EDW95927.1    GDIQ01016947    JAN77790.1    GDIP01189028    JAJ34374.1    CM000070    EAL27667.2    CH479179    EDW24836.1    GDIP01015566    JAM88149.1    UFQS01000673    UFQT01000673    SSX06015.1    SSX26372.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000007151    UP000005204    UP000215335    + More
UP000027135    UP000002358    UP000053825    UP000235965    UP000053097    UP000279307    UP000053105    UP000008237    UP000076502    UP000036403    UP000007755    UP000075809    UP000078540    UP000005205    UP000078492    UP000078541    UP000030742    UP000078542    UP000242457    UP000005203    UP000019118    UP000007266    UP000245037    UP000015103    UP000000311    UP000009046    UP000008820    UP000002320    UP000092462    UP000069940    UP000085678    UP000092443    UP000092445    UP000091820    UP000001555    UP000078200    UP000092444    UP000095300    UP000054359    UP000000305    UP000037069    UP000076858    UP000092460    UP000002282    UP000001819    UP000008744   

PRIDE

H9JSS2   

Pfam

PF11718   CPSF73-100_C        + More
PF07521   RMMBL
PF16661   Lactamase_B_6
PF10996   Beta-Casp
PF00753   Lactamase_B

Interpro

IPR001279   Metallo-B-lactamas        + More
IPR021718   CPSF73-100_C       
IPR036866   RibonucZ/Hydroxyglut_hydro       
IPR022712   Beta_Casp       
IPR011108   RMMBL       
IPR013087   Znf_C2H2_type       

SUPFAM

SSF56281   SSF56281       

Gene 3D

3.60.15.10    

ProteinModelPortal

A0A2A4JX46   A0A2H1VQI7   A0A2W1BTV7   A0A0N1IMS2   A0A0N1IEX9   A0A212F2I2   + More
H9JSS2   A0A232F768   A0A067RDR8   K7J2M9   A0A0L7QWD3   A0A1Y1LBJ4   A0A2J7R5C5   A0A026WY67   A0A0N0U5P0   E2BWA8   E9J3A8   A0A154PS55   A0A0J7KBN9   F4X126   A0A151XD31   A0A195B7C4   A0A158NGY1   A0A195DWF4   A0A195FNY7   U4UDT1   A0A151ID90   A0A2A3EHP0   A0A088A3T2   N6UEA4   A0A1B6DJS3   A0A139WFI0   A0A2P8XPT2   A0A146L7R5   A0A1B6KSK1   A0A1B6ET64   A0A224XKF2   T1HZV1   A0A0A9YYP8   A0A069DVS5   A0A023F454   E2AIH9   A0A0V0G9S7   E0VDY7   A0A1Q3F4J9   Q170J6   B0X8N8   A0A1B0D6R5   T1JIA8   A0A182GPT9   G3MI33   A0A131XG05   A0A1L8DH05   A0A1E1X5Z7   A0A0A1WZH2   A0A2R2MI55   W8CAQ0   L7LUX8   A0A224YLX6   A0A131Z7V5   A0A293M8C0   A0A2P6JZT1   A0A0K8VB67   A0A034VDT8   A0A0P6A4X3   A0A1A9Y9E4   A0A1Z5KU63   A0A1A9ZEA1   V5H4V8   A0A1A9W2T5   B7P2D2   A0A1A9V5Z7   A0A0P5X9B8   A0A1B0FEP4   A0A0P5TCC5   A0A1I8PMY3   A0A087T459   E9H6R0   A0A2R5LL73   A0A0P5BX64   A0A2R7X216   A0A0L0CNN5   A0A1I8PMU4   A0A0N7ZQ71   A0A0P6G968   A0A0P5ZCM9   A0A1B0BGV6   A0A0N8A5S0   A0A0P6DVS9   A0A0P5N5V0   A0A0P4ZLF2   A0A0P5N4F1   A0A336MGA6   B4PLZ5   A0A0P6HMU5   A0A0P5B7F1   Q299N6   B4G5H0   A0A0P6BGC3   A0A336M7S8  

PDB

2I7V     E-value=3.17229e-64,     Score=621

KEGG

101737197    K14403 cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] | (RefSeq) cleavage a

GO

GO:0005634   GO:0016180   GO:0004527   GO:0003676   GO:0006398   GO:0004521   GO:0005847   GO:0006378   GO:0008409   GO:0003723  

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12465

Exp number, first 60 AAs:

0.00165

Total prob of N-in:

0.00460

outside

1  -  373

 

 

Pi

176.168331

Theta

161.893412

Tajima's D

0.290124

CLR

0.264423

CSRT

0.450327483625819

Interpretation

Uncertain