The Silkworm Genome Information Database

Gene

KWMTBOMO11249

Pre Gene Modal

BGIBMGA012622

Annotation

PREDICTED:_protein_prickle-like_[Bombyx_mori]

Location

Bomo_Chr19(+):1951940-1961254 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.636

CDS

ATGCTTCTTAAATGCGAGGAGTCCATGTCATCTGGTGACATGTGCGTGTCTGCTGCCAGGGCGGGACCCGCGGCGCGGTGGCATCCCGCGTGCTTCGTCTGCAGCACGTGCCAGGAAATATTAGTCGACCTGGTCTATTTCTGGAAGGAAGGAAGATTGTACTGCGGGAGGCATCACGCTGAGACCTTGAAACCGAGATGTTCTGCTTGTGATGAGATAATCCTGGCGGACGAGTGCACGGAGGCGGAGGGGCGCGCGTGGCACATGAAACACTTCGCCTGCGCGGAGTGCTCCAAGCAGCTGGGTGGGCAGCGGTACATCATGCGCGAGGCGCGCCCCTACTGCCTGCCCTGCTTTGATGGCTGCTTCGCGGAGTACTGCGACGCGTGCGGCGAGCCCGTCGGCGTGGACCAGGGACAGATGTCGCACGAGGGACAGCACTGGCACGCCACGGAGCGCTGCTTCGCCTGCCACACCTGCCACGCCAGCCTCCTGGGTCGCCCCTTCCTGCCGCGTAAGGGAGCGATATTCTGTTCCATAGCCTGCTCTAAGGGAGAACCTCCGACGCCATCCGACTCGTCGGGACCCGGACCTCGCCCGCCGCGCGTCGCTCGACCTAGGCGGCTTCCTTCACCCAAGTCTCCCTCGCGCACGCCGCAAAGAGAGCCCTCTCCTCATATTGACGCTGATTCTGAACCTAGCGGCTCATTAGCACCGGAGTCGCCCCCGCCCCACCCTCCGCCACCGCCTCACGCTTGTCTGAGCTTGGACCGAGCATTAGCAGACTTAAGACTAGAGCAGTCAATGACGGAGCGACAAATACAACCCACCCCAACTTCAGACGTTCAGAAAGAAGAGTCCCCTAGCGACTGGAAGCCGCCGCACCCCGTCGAGGCTCAAGCAGTGGTGACCCCGGGGCACTCGTCATCCATGCCAGAACTAATGTTAGTAGACGGTAAGAAATCCCCTCGAAAGCCTAGAGGAGGCCGGACGGTTAGATTCTGCGGAGACGACAACGAAGCGTTCGAGCCGGATGAGCCCGTGAGGAAAGAGAAGGTCCGAGACGAGGACGCGAGCAGCTACTGCAGCACCTGCTCGTCTTCCTCTTCTTCGACGGAGTCGTACACGCTGCCGGCGCGGAGGGCGTACGGCGGAGTGCGGATCTCCTACGTGCCGAACGACGCCGTGGCCTGCGCCAAGCGAGAGCGGCAGCGGAGGAACGGACCCCACGACAAGAACTGCATCATCTCGTGA

Protein

MLLKCEESMSSGDMCVSAARAGPAARWHPACFVCSTCQEILVDLVYFWKEGRLYCGRHHAETLKPRCSACDEIILADECTEAEGRAWHMKHFACAECSKQLGGQRYIMREARPYCLPCFDGCFAEYCDACGEPVGVDQGQMSHEGQHWHATERCFACHTCHASLLGRPFLPRKGAIFCSIACSKGEPPTPSDSSGPGPRPPRVARPRRLPSPKSPSRTPQREPSPHIDADSEPSGSLAPESPPPHPPPPPHACLSLDRALADLRLEQSMTERQIQPTPTSDVQKEESPSDWKPPHPVEAQAVVTPGHSSSMPELMLVDGKKSPRKPRGGRTVRFCGDDNEAFEPDEPVRKEKVRDEDASSYCSTCSSSSSSTESYTLPARRAYGGVRISYVPNDAVACAKRERQRRNGPHDKNCIIS

Uniprot

H9JSW0 A0A2W1BSM4 A0A2A4JX68 A0A2H1V9B6 A0A212F2F0 A0A0L7LTE6 + More
A0A0N1PFH6 A0A0N1I4K3

Pubmed

19121390 28756777 22118469 26227816 26354079

EMBL

BABH01035985 KZ149965 PZC76207.1 NWSH01000411 PCG76591.1 ODYU01001359 + More
SOQ37425.1 AGBW02010741 OWR47928.1 JTDY01000117 KOB78748.1 KQ461184 KPJ07518.1 KQ459449 KPJ00892.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000037510 UP000053240 UP000053268 + More

PRIDE

H9JSW0

Pfam

PF00412 LIM + More
PF06297 PET

Interpro

IPR033726   LIM2_prickle        + More
IPR033727   LIM3_prickle
IPR001781   Znf_LIM
IPR010442   PET_domain
IPR033725   LIM1_prickle
IPR033723   PET_prickle

CDD

cd09420  LIM3_Prickle
cd09418  LIM2_Prickle
cd09827  PET_Prickle
cd09415  LIM1_Prickle

ProteinModelPortal

H9JSW0 A0A2W1BSM4 A0A2A4JX68 A0A2H1V9B6 A0A212F2F0 A0A0L7LTE6 + More
A0A0N1PFH6 A0A0N1I4K3

PDB

2XQN E-value=2.34377e-23, Score=270

KEGG

101737057 K04511 prickle | (RefSeq) protein prickle-like

PATHWAY

04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0046872 GO:0008270 GO:0003676 GO:0016491 GO:0004190 GO:0006508 GO:0005515 GO:0006811 GO:0005622 GO:0006810 GO:0003824

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00584999999999999

Exp number, first 60 AAs:

0.00569

Total prob of N-in:

0.00331

outside

1 - 417

Pi

245.085453

Theta

205.276613

Tajima's D

1.076392

CLR

0.147273

CSRT

0.67981600919954

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics