SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11247
Pre Gene Modal
BGIBMGA012620
Annotation
PREDICTED:_protein_prickle-like_[Bombyx_mori]
Full name
Metalloendopeptidase       + More
Protein prickle      
Protein espinas      
Alternative Name
Protein spiny legs
Location in the cell
Nuclear   Reliability : 2.617
 

Sequence

CDS
ATGTCGCTATCCCCCCATCCAGTGCCTCAAGGGAAGTTCAGGGGTCTACTAGAACACGCTGAACGGTTGATGAAACCAGTGGATCCTCATCGGCATTCTCAAAGCGACGACGATTCCGGATGTGCTTTGGAAGAGTATACGTGGGTTCCGCCTGGATTGAGACCAGAACAGGTCCATCTTTACTTCTCAGCACTTCCGGAAGACAAGGTCCCGTACGTGAATAGCGTAGGGGAGAGGTACCGCCTCAAGCAACTACTTCAACAACTTCCACCTCAAGATAATGAGGTTCGGTACTGCCATGCTTTATCTGATGAAGAGAGGAAGGAGTTGAGGCTGTTCAGCGCACAGAGGAAACGCGAGGCCCTGGGTAGAGGACAGGCGAGGCAGCTCCACGCATCGGCGCCTTGCGAGAGGAGTGGATCGTGA
Protein
MSLSPHPVPQGKFRGLLEHAERLMKPVDPHRHSQSDDDSGCALEEYTWVPPGLRPEQVHLYFSALPEDKVPYVNSVGERYRLKQLLQQLPPQDNEVRYCHALSDEERKELRLFSAQRKREALGRGQARQLHASAPCERSGS

Summary

Description
Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye (By similarity).
Acts in a planar cell polarity (PCP) complex; polarization along the apical/basal axis of epithelial cells. Correct expression of the alternative isoforms is required for PCP signaling in imaginal disks. PCP signaling in the wing disk requires the receptor fz and the cytoplasmic proteins dsh and pk. These act in a feedback loop leading to activation of the jnk cascade and subsequent polarized arrangement of hairs and bristles. Dgo and pk compete with one another for dsh binding, thereby modulating fz dsh activity and ensuring tight control over fz PCP signaling. Vang, stan and pk function together to regulate the establishment of tissue polarity in the adult eye.
Cofactor
Zn(2+)
Subunit
Interacts with dsh; PET and LIM domains interact with dsh DEP domain, in wing cells. Interacts with Vang in photoreceptor cells (By similarity).
Interacts with dsh; PET and LIM domains interact with dsh DEP domain, in wing cells. Interacts with Vang in photoreceptor cells.
Similarity
Belongs to the prickle / espinas / testin family.
Keywords
Cell membrane   Complete proteome   Developmental protein   LIM domain   Membrane   Metal-binding   Reference proteome   Repeat   Zinc   Alternative splicing  
Feature
chain  Protein prickle
splice variant  In isoform B.
EC Number
3.4.24.-
EMBL
ODYU01000784    SOQ36096.1    AGBW02010753    OWR47914.1    RSAL01000017    RVE52914.1    + More
NWSH01000411    PCG76591.1    KZ149965    PZC76207.1    BABH01035978    BABH01035979    BABH01035980    KQ459449    KPJ00894.1    GEBQ01005994    JAT33983.1    GECZ01002612    JAS67157.1    GEDC01011388    JAS25910.1    KQ971354    EFA06885.1    KB631648    ERL85005.1    UFQS01000067    UFQT01000067    SSW98994.1    SSX19376.1    SSW98992.1    SSX19374.1    SSW98993.1    SSX19375.1    GEZM01005749    GEZM01005748    JAV95942.1    ADMH02000160    ETN67532.1    GGFK01006475    MBW39796.1    GGFK01006379    MBW39700.1    JXJN01005875    JXJN01005876    JXJN01005877    JXJN01005878    JXJN01005879    GGFK01005759    MBW39080.1    GGFK01005868    MBW39189.1    GGFK01005772    MBW39093.1    AXCN02000591    GGMR01002668    MBY15287.1    AXCM01000153    GAKP01023256    JAC35700.1    CM000362    EDX05987.1    CVRI01000043    CRK96002.1    AAAB01008807    APCN01000218    JTDY01000684    KOB76236.1    IACF01001157    LAB66873.1    KK856713    PTY26312.1    GL732533    EFX84948.1    GBXI01007033    JAD07259.1    CH479181    EDW31467.1    GGMR01000922    MBY13541.1    GGMS01011264    MBY80467.1    CH916367    EDW01573.1    GDHF01032921    JAI19393.1    CH963849    EDW74165.1    CM000071    EAL24766.1    AJ243708    AJ243710    AJ243709    AE013599    AAF59281.2    CAB57345.3    GFXV01002542    MBW14347.1    BT126321    AEB66928.1    CH954177    KQS70970.1    EDX05972.1    AAM68907.1    AJ251892    AY094898    BT030763    AAF59292.2    AAM11251.1    CAB64381.1    EDV59713.1    ABLF02031445    ABLF02031456    ABLF02031459    OUUW01000001    SPP73099.1    CH480816    EDW46712.1    CM000157    EDW89143.2    GDIQ01042199    JAN52538.1    AGB93293.1    CH902619    EDV35887.2    AGB93294.1    EDW01588.1    CM002911    KMY91919.1    GDIP01175122    JAJ48280.1    EDV59728.2    GDIP01175123    JAJ48279.1    KMY91925.1    CH940667    EDW57330.2    GDIQ01056544    JAN38193.1    GDIQ01173399    JAK78326.1    GAMC01010064    JAB96491.1    KMY91924.1    GDIQ01056543    JAN38194.1    GDIQ01056542    JAN38195.1    GDIQ01245332    JAK06393.1    EDW31472.1    GDIQ01245331    GDIQ01245330    JAK06395.1    SPP73107.1    GBXI01005057    JAD09235.1    GDIQ01173400    JAK78325.1    KRT01536.1    GDHF01033265    JAI19049.1   
Pfam
PF06297   PET        + More
PF00412   LIM
PF01400   Astacin
Interpro
IPR033723   PET_prickle        + More
IPR010442   PET_domain       
IPR033726   LIM2_prickle       
IPR033727   LIM3_prickle       
IPR001781   Znf_LIM       
IPR033725   LIM1_prickle       
IPR001190   SRCR       
IPR001506   Peptidase_M12A       
IPR034035   Astacin-like_dom       
IPR006026   Peptidase_Metallo       
IPR024079   MetalloPept_cat_dom_sf       
IPR029063   SAM-dependent_MTases       
SUPFAM
SSF53335   SSF53335       
Gene 3D

Ontologies

Topology

Subcellular location
Cell membrane  
Length:
141
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.02884
outside
1  -  141
 
 

Population Genetic Test Statistics

Pi
184.595971
Theta
189.321202
Tajima's D
0.279651
CLR
1.916109
CSRT
0.449627518624069
Interpretation
Uncertain
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