SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11242
Pre Gene Modal
BGIBMGA012989
Annotation
Yokozuna_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.831
 

Sequence

CDS
ATGTTAGCCAGTCTGGATAAAGTTTTTGAGAGAAAAGGTATTTTCACTAAATTACACTTGCGAAGAAAGTTATTGTCTCTTAAGCTGAGGGATGATAAATTGGAAGACTATTTCATGAGATTTGAAAGTCTGATTAGAGAAATAGAAAATATTGATAAAAAGATGGATGAAGAAGATAAAATATGTTATTTGCTGACGGGTATGTCGGAAAAGTACAACACAGTGATAACTGCTATTGAAACAATGTCTGCAGATAAAATTGACATGGAGTTTGTCAAGGCTCGGTTATTGGACGAAGAACTCAAACTGAATAATAAAGGTGAAGAGTATAATGATACAAAGAATGATGTAAGTTTTACTGCCTCAAGTGTAGAATGTTATCGTTGCCACAAAAAGGGCCATTTTGCACGTGAATGTAGAAGCAGAGGTCGTGGCTATTCAAGGAGAAACATTAATAATAAAGGTATATGTGGTAAAAACAGAACTGAAGAACAAAATAATATGACAGAAAGCATCCCAGAGAATAAATATAATTTTCTAGCAATAACGGAGTGTAATCTAAGTAAAGAAGACAAATTTATAGAATTTATAATAGATTCAGGAGCTACAGAAAATCTTATCAAGGAAGAATTGGAGAAATACATGTATGAAATTAAGAAACTACCAAATAAAATAAAAATTAAGATTGCAAATGGAGAAATATTAGAGGCTGACAAGAAAGGAAAGATAACCATAAGAGATAAAAATAATAATACTATAAATATAGAAGCGTTAATGGTCCCAGGGATTTATCATAATATAATATCTGTAAGAAACTTAAATATGAAAGGAAATAAAGTTGTTTTTACAAAATTTGGAGCACAAATAATAAATGGAAGAAAAGTCTTAAAATGTTCAGATAGAAATGGTTTATATATAGTACAAGGCGAAATAACACTAATAGAAGAAGCGAACTCAAGTGTACAGCAAGACAAAAATATTTGGCACCAACGTCTCGGACACTTAAATAGGAAATCATTAAAAATTATGGGTTTACCTGTGTCTGATGAAACATGTGGTCCTTGCATGAAGGGAAAATCTACTCGTTTACCATTCTATCCAGTTGACAGGCCAAGAAGTAGAAAAATAGGAGAATTATTGCATACAGATATTGGAGGTCCTGTATCACCAATTTCTTATGATGAAAAACAATATTACCAGACCATAACTGATGATTTTTCTCATTTTGTGACTGTTTATCTATTAAAGAATAAATCTGAAGCCACAAGAAATTTAATAAATCATATAAAGGAGTTAGAAAGACAAAAGGAAACTAAAGTTAAACGCATAAGATGTGATAATGGTGGAGAGTTCACCGCTGGCTGTTTGAAGCAATTTTGTATGGAAAATGGAATTATAATAGAGTATAGTCAACCTTACACACCACAACAAAATGGTGTGGCAGAGAGGCTAAACAGAACATTACTAGATAAGTCAAGAACTTTATTAAGTGAAACTGGATTACCTAAATATTTGTGGTCTGAGGCTATAATGTGTGCAGCATATCAATTGAATCGATGCCCATCAAGATCTATAAAGTATAAGATACCAGCTGAAATATACTACGGACTAGAAAATGTTAACTTGAACAAGTTAAAGGTATTTGGTTCTAAAGCATGGTATACGTGTGTCCCACAGAATAAGAAATTAGATAATAGAGCTGAAGAAGCCATTATGGTTGGCTATGGCAAACAAGGTTATAGATTATGGAATCCAAAAACAACAGAAATAATATTCTGCAGAGATGTCAAGTTTGATGAAAAGTACTATGAACATAAAAACAGTATTAAAAATAACAACTATATTTATTTACCAGAAGAGGACACACAAAATGAAGTTATGTGCAATGATAAAAATAAAATTGAGGAAGAAAAAGTAATACAGAAAAATGAAGAGACAGACACAAAAAGAACTAGATCAGGAAGGATAATAAAGCAACCTGATTATCTAAAGAATTTTGGGACGTACACAGCATATTGTTACTTAGTGTGTAATGACCCAGAAAGCTATGAAGAAGCGATAAAAGAAGTTTCATGGAAAGAAGCGATACATAAGGAATTAGCAGCACTTGAGAACTTACAAAGCTGGGAAGAGACTAAACTACCGAAAGGAAAATTAGCTATAGACACTAAGTGGGTTTTTAGAACGAAAGACGATGGCACTAAGAAAGCCAGATTAGTCGCTCGAGGTTTTCAAATAAAAAATTATGAGAATGAAATATTCTACAGTCCTGTAGTAAGAATGTCTACGATAAGAGCATTTTTTGTAAAAGCTATCCAAGAAGGATACAAATTAAGGCAATTGGATATTCCTACAGCCTTTCTCAATGGATTTCTTGATAGTGAAGTTTATATAAAAATACCCAAAGGCAAAGAAAACAAAGATGGAATAGTTTTGAGGTTAAAGAGAGCATTGTATGGATTAAAAGAAAGCCCTAAATGCTGGAACATGAGATTTGATGAATTTGCAAGAAAGAATGGATTGATACAGTCATTACATGATTGTTGTCTATACACAGATAAAAATATATGGCTTATAATATTTGTAGATGATATTTTATTAATTGGAATGGAAAAGGATACAGAAAAAATTATTAATAAATTGAAGCAAGAATTTAAAGCTAAAGATTTAGGACAGATTGAGAAATATCTTGGTATGGAAATTAAACAGGAAGAAAGTAAATTAACGATTAAACAAGAAAAGATAATTGAGAAGATACTAGAAAAATTTGGAATGTCAGAATGTAAAGGTATAGGAACACCTATGGAGGTAAATTTTCAAATAAACAAAAATGAGAAGATTATTGATGTACCATATCGACAACTCATAGGAAGCATAATGTATTTGGCTACTATGTCCAGACCAGATCTGCAGTTTGCTGTATCATATCTTAGCAGATACCTAGACTGTCCTACTCAACAGACTTGGAAAGCTGGAAAGAGAATTCTGCAATACCTAAAAGCTACAAAAGACAAAATGTTAGTTTTTCAAAAAAGGAATAATCTAGATGTGGATTTATGTGCATATTCAGACTCTGATTGGGCAGGTGATATTGTTGATCGCAAAAGTGTCAGTGGGGGTATCATAATGTGTAGTGATAATCCTGTATTTTGGTACTCTAGAAAACAAAGTTGTGTTGCATTATCGACAGCAGAATCAGAGTACATTGCTAGTGCTTGTTGTGCTCAAGAGTTAGTGTATTTGAAAGGTGTACTGTGTGATTTTGGATATGAATGTAAATTGACTTTATTTATGGATAATAAGGGAGCAATATGTTTAGCGAAGTCAAATGAAAACTCTAAAAGGAGTAAGCATATTGATATAAGGATGCACTATATTAAGGACTTGGTGAGGAATAATGTATTAGATATTGAATATGTGTCATCTGATAAAAATATTGCTGATATTTGTACAAAATCTTTATGCAAAGAAAAGTTTGTATTTTTTAGAAGTTTGTTACTAAAGTAA
Protein
MLASLDKVFERKGIFTKLHLRRKLLSLKLRDDKLEDYFMRFESLIREIENIDKKMDEEDKICYLLTGMSEKYNTVITAIETMSADKIDMEFVKARLLDEELKLNNKGEEYNDTKNDVSFTASSVECYRCHKKGHFARECRSRGRGYSRRNINNKGICGKNRTEEQNNMTESIPENKYNFLAITECNLSKEDKFIEFIIDSGATENLIKEELEKYMYEIKKLPNKIKIKIANGEILEADKKGKITIRDKNNNTINIEALMVPGIYHNIISVRNLNMKGNKVVFTKFGAQIINGRKVLKCSDRNGLYIVQGEITLIEEANSSVQQDKNIWHQRLGHLNRKSLKIMGLPVSDETCGPCMKGKSTRLPFYPVDRPRSRKIGELLHTDIGGPVSPISYDEKQYYQTITDDFSHFVTVYLLKNKSEATRNLINHIKELERQKETKVKRIRCDNGGEFTAGCLKQFCMENGIIIEYSQPYTPQQNGVAERLNRTLLDKSRTLLSETGLPKYLWSEAIMCAAYQLNRCPSRSIKYKIPAEIYYGLENVNLNKLKVFGSKAWYTCVPQNKKLDNRAEEAIMVGYGKQGYRLWNPKTTEIIFCRDVKFDEKYYEHKNSIKNNNYIYLPEEDTQNEVMCNDKNKIEEEKVIQKNEETDTKRTRSGRIIKQPDYLKNFGTYTAYCYLVCNDPESYEEAIKEVSWKEAIHKELAALENLQSWEETKLPKGKLAIDTKWVFRTKDDGTKKARLVARGFQIKNYENEIFYSPVVRMSTIRAFFVKAIQEGYKLRQLDIPTAFLNGFLDSEVYIKIPKGKENKDGIVLRLKRALYGLKESPKCWNMRFDEFARKNGLIQSLHDCCLYTDKNIWLIIFVDDILLIGMEKDTEKIINKLKQEFKAKDLGQIEKYLGMEIKQEESKLTIKQEKIIEKILEKFGMSECKGIGTPMEVNFQINKNEKIIDVPYRQLIGSIMYLATMSRPDLQFAVSYLSRYLDCPTQQTWKAGKRILQYLKATKDKMLVFQKRNNLDVDLCAYSDSDWAGDIVDRKSVSGGIIMCSDNPVFWYSRKQSCVALSTAESEYIASACCAQELVYLKGVLCDFGYECKLTLFMDNKGAICLAKSNENSKRSKHIDIRMHYIKDLVRNNVLDIEYVSSDKNIADICTKSLCKEKFVFFRSLLLK

Summary

EMBL
AB014676    BAA74713.1    GDHC01015802    JAQ02827.1    GBHO01027564    JAG16040.1    + More
GBHO01004832    JAG38772.1    GDHC01019310    JAP99318.1    GEDC01012841    GEDC01000503    JAS24457.1    JAS36795.1    GBHO01035173    JAG08431.1    GFTR01008662    JAW07764.1    GEZM01072005    JAV65635.1    JXUM01155348    KQ572178    KXJ68066.1    GEZM01028916    JAV86196.1    LJIG01022881    KRT78250.1    ABLF02041793    KF740825    AIC77183.1    JXUM01025857    KQ560736    KXJ81076.1    GBBI01004033    JAC14679.1    JXUM01136904    KQ568499    KXJ68982.1    KQ483843    KYP40337.1    GEZM01032204    JAV84770.1    GEDC01029908    JAS07390.1    GEHC01000878    JAV46767.1    CM003606    KYP69041.1    KQ483623    KYP44533.1    JXUM01011189    KQ560325    KXJ83029.1    CM003608    KYP66220.1    GEHC01000959    JAV46686.1    GBHO01040663    JAG02941.1    OIVN01006466    SPD33659.1    KYP68607.1    OIVN01006211    SPD27863.1    AP002064    BAB01972.1    OIVN01002473    SPD03944.1    AY009101    AAK12626.1    AC073555    AAG60117.1    OIVN01001931    SPC99063.1    GFTR01008327    JAW08099.1    AC007259    AAD50001.1    GBHO01024362    JAG19242.1    AC079604    AC079131    AAG50698.1    AAG50765.1    KQ460297    KPJ16236.1    AL137898    CAB71063.1    KQ484038    KYP38095.1    KK112142    KFM56833.1    OIVN01001906    SPC98838.1    OIVN01000486    SPC81000.1    KQ483890    KYP39660.1    FJ544856    ACL97386.1    KF303287    AGW47867.1    DF973742    GAU39052.1    LBMM01012645    KMQ86082.1    KQ484324    KYP35753.1    CM001883    EOY11267.1    FJ544853    ACL97384.1    LBMM01012492    KMQ86193.1    NKQK01000002    PSS35035.1    FJ544851    ACL97383.1    KQ484186    KYP36645.1    FJ544854    ACL97385.1    JYDJ01000136    KRX42725.1    KQ460882    KPJ11482.1    CM003607    KYP67664.1    KL367515    KFD67411.1    OIVN01000279    SPC77544.1    GEHC01000966    JAV46679.1    KQ483702    KYP42748.1    ASHM01015075    PNX96991.1    OIVN01006353    SPD31284.1    CM003610    KYP61818.1    KYP63036.1    KQ483417    KYP53032.1    AM433482    CAN69340.1    KQ485638    KYP31826.1    KQ483853    KYP40164.1    OIVN01003431    SPD11153.1    ASHM01014140    PNX96091.1    KQ483456    KYP50361.1    KYP66838.1    OIVN01001308    SPC92446.1    OIVN01004651    SPD18552.1    KYP68287.1    JYDH01000330    KRY26802.1    CM003613    KYP54398.1    JYDL01000068    KRX18751.1    GEZM01044912    JAV78046.1    NWSH01002292    PCG68657.1    PCG68658.1    ASHM01002084    PNY07765.1    GEZM01063091    JAV69316.1    OIVN01005669    SPD23557.1    KQ485623    KYP31853.1    GDUN01000215    JAN95704.1    GDUN01000217    JAN95702.1    AM447500    CAN74198.1    DF973299    GAU24969.1    AC149291    AAT38758.1    CM003604    KYP74877.1    JYDH01000102    KRY32232.1   
Pfam
PF00665   rve        + More
PF07727   RVT_2
PF13976   gag_pre-integrs
PF00098   zf-CCHC
PF13961   DUF4219
PF13358   DDE_3
Interpro
IPR036397   RNaseH_sf        + More
IPR039537   Retrotran_Ty1/copia-like       
IPR001584   Integrase_cat-core       
IPR013103   RVT_2       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR038717   Tc1-like_DDE_dom       
IPR000772   Ricin_B_lectin       
SUPFAM
SSF53098   SSF53098        + More
SSF57756   SSF57756       
Gene 3D
PDB
5UOQ     E-value=2.4676e-07,     Score=136

Ontologies

Topology

Length:
1168
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00746999999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00033
outside
1  -  1168
 
 

Population Genetic Test Statistics

Pi
53.367391
Theta
124.886614
Tajima's D
-1.446082
CLR
127.302087
CSRT
0.0634968251587421
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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