Gene

KWMTBOMO11225

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):1429317-1430125      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.616

CDS

ATGGCCCTATACGGGGCGCCCGTGTGGGGCCAGTCCCTGGCCGTGGGGGTAGCAAAGTTGCTGCAACGGCCGCAACGCACCATCGCGGTCAGGGTCATCCGCGGCTATCGCACCATCTCCTTCGAGGCGGCGTGTGTACTGGCTGGGACGCCGCCTTGGGTTCTGGAAGCGGAGGCGCTCGCCGCTGACTATCAGTGGCGGGCTGACTTTCGTGCCCGGGGCGTGGCGCGCCCCAGCCCCAGTGTGGTCAGAGCGCGGAGGGCCCAATCTCGGCGGTCCGTGCTGGAATCATGGTCCAGGCGGCTGGCTGATCCTTCGGCTGGTCGTAGGACCGTCGAGGCGATTCGCCCAGTCCTTGTGGACTGGGCGAATCGTGACAGAGGACGCCTCACTTTCCGGCTCACGCAGGTGCTCACTGGGCATGGTTGCTTCGGTGAGTTCCTGCACCGGATCAGAGCCGAGCCGACGGCAGAGTGCCACCATTGTGGTTGCGACTTGGACACGGCAGAGCACACGCTCGTTGCCTGCCCCGCATGGGAGGGGTGGCGCCGTGTCCTCGTCGCAAGAATAGGAAACGACTTGTCGTTGCCGAGTGTTGTGGCATCGATGCTCGGCGACGACGAGTCGTGGAAGGCGATGCTCGACTTCTGCGAGTGCACCATCTCGCAGAAGGAGGCGGCGGGGCGCGTGAGAGACGCGCAAGCCCGCCGCCGTCGAGCGGGGGCCAGGGAGGCGGATATCGCCCAAGCCCTGGCCCTCTAA

Protein

MALYGAPVWGQSLAVGVAKLLQRPQRTIAVRVIRGYRTISFEAACVLAGTPPWVLEAEALAADYQWRADFRARGVARPSPSVVRARRAQSRRSVLESWSRRLADPSAGRRTVEAIRPVLVDWANRDRGRLTFRLTQVLTGHGCFGEFLHRIRAEPTAECHHCGCDLDTAEHTLVACPAWEGWRRVLVARIGNDLSLPSVVASMLGDDESWKAMLDFCECTISQKEAAGRVRDAQARRRRAGAREADIAQALAL

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A0J7KCI1   A0A2W1BSQ5   A0A2W1BDU5   + More
Q8MY27   Q8MY33   Q8MY31   A0A2W1C3J5   Q8MY35   A0A0J7N1D9   A0A0J7MZM4   A0A3S2N998   A0A0J7KJB9   O01419   A0A2H1WNZ5   A0A194R5D3   A0A0J7N7H9   A0A3L8DDS1   A0A0J7KS67   A0A0J7KCQ3   E2BVR6   A0A0J7MY07   A0A3S2LNH8   A0A0J7KJH4   A0A0J7KIY3   A0A0J7KIY5   A0A0J7JXN3   A0A0J7NEG9   A0A0J7KLT9   A0A0J7KJG6   A0A3L8DDV9   A0A0J7JZ13   A0A0J7JZF7   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KQK3   A0A0J7KM81   A0A0L7R7C3   A0A2H1VYR8   A0A3L8DIL1   A0A2S2NPF9   A0A0J7KJ07   A0A0J7MX22   A0A2S2PJ67   A0A0J7K3R6   J9KRD0   A0A0J7KIM6   A0A0J7K3F1   A0A0J7KYD2   A0A0J7K840   A0A2S2P557   J9KZ24   A0A0J7KL06   A0A0J7KWU5   A0A0J7NCZ4   A0A0J7KPR0   X1WNM1   A0A0J7KPZ3   J9LAC1   A0A0J7KIW1   A0A2S2Q1A1   J9KLZ3   J9KJG8   J9LDW8   A0A0J7KMU1   A0A2S2PYG9   A0A0J7K4I2   X1WJY4   A0A2H8TIT6   A0A0J7KRU6   A0A0Q9WRU0  

Pubmed

12644555    28756777    9092665    26354079    30249741    20798317    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
LBMM01009501    KMQ88083.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    KZ149896    PZC78733.1    AB078929    BAC06452.1    LBMM01012027    KMQ86470.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    RSAL01000481    RVE41577.1    LBMM01006538    KMQ90523.1    D85594    BAA19776.1    ODYU01009945    SOQ54696.1    KQ460685    KPJ12887.1    LBMM01008861    KMQ88580.1    QOIP01000009    RLU18544.1    LBMM01003679    KMQ93242.1    LBMM01009494    KMQ88097.1    GL450953    EFN80213.1    LBMM01014132    KMQ85305.1    RSAL01003504    RVE40273.1    LBMM01006657    KMQ90417.1    LBMM01006909    KMQ90209.1    LBMM01006954    KMQ90166.1    LBMM01024024    KMQ82631.1    LBMM01006110    KMQ90925.1    LBMM01005733    KMQ91252.1    LBMM01006671    KMQ90407.1    QOIP01000010    RLU18098.1    LBMM01019839    KMQ83438.1    LBMM01019838    KMQ83439.1    LBMM01008682    KMQ88705.1    QOIP01000031    RLU14697.1    LBMM01004272    KMQ92618.1    LBMM01005634    KMQ91349.1    KQ414641    KOC66782.1    ODYU01005282    SOQ45985.1    QOIP01000007    RLU20280.1    GGMR01006442    MBY19061.1    LBMM01006662    KMQ90413.1    LBMM01014909    KMQ85000.1    GGMR01016864    MBY29483.1    LBMM01015018    KMQ84954.1    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    LBMM01007036    KMQ90099.1    LBMM01015025    KMQ84953.1    LBMM01002052    KMQ95336.1    LBMM01011877    KMQ86578.1    GGMR01011974    MBY24593.1    ABLF02006132    LBMM01006063    KMQ90967.1    LBMM01002480    KMQ94776.1    LBMM01006640    KMQ90440.1    LBMM01004634    KMQ92224.1    ABLF02037241    ABLF02037246    ABLF02044766    LBMM01004505    KMQ92346.1    ABLF02017307    LBMM01006725    KMQ90373.1    GGMS01002352    MBY71555.1    ABLF02023401    ABLF02029423    ABLF02060278    ABLF02041886    ABLF02016435    ABLF02016436    ABLF02064751    LBMM01005216    KMQ91703.1    GGMS01001211    MBY70414.1    LBMM01014294    KMQ85237.1    ABLF02011238    GFXV01002242    MBW14047.1    LBMM01003941    KMQ92969.1    CH963857    KRF98317.1   

Proteomes

UP000036403    UP000283053    UP000053240    UP000279307    UP000008237    UP000053825    + More
UP000007819    UP000007798   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF01421   Reprolysin
PF00732   GMC_oxred_N
PF17919   RT_RNaseH_2
PF13843   DDE_Tnp_1_7
PF05699   Dimer_Tnp_hAT
PF00098   zf-CCHC

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR041577   RT_RNaseH_2       
IPR029526   PGBD       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       
SSF51905   SSF51905       
SSF53098   SSF53098       
SSF140996   SSF140996       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A0J7KCI1   A0A2W1BSQ5   A0A2W1BDU5   + More
Q8MY27   Q8MY33   Q8MY31   A0A2W1C3J5   Q8MY35   A0A0J7N1D9   A0A0J7MZM4   A0A3S2N998   A0A0J7KJB9   O01419   A0A2H1WNZ5   A0A194R5D3   A0A0J7N7H9   A0A3L8DDS1   A0A0J7KS67   A0A0J7KCQ3   E2BVR6   A0A0J7MY07   A0A3S2LNH8   A0A0J7KJH4   A0A0J7KIY3   A0A0J7KIY5   A0A0J7JXN3   A0A0J7NEG9   A0A0J7KLT9   A0A0J7KJG6   A0A3L8DDV9   A0A0J7JZ13   A0A0J7JZF7   A0A0J7N7S8   A0A3L8D2G3   A0A0J7KQK3   A0A0J7KM81   A0A0L7R7C3   A0A2H1VYR8   A0A3L8DIL1   A0A2S2NPF9   A0A0J7KJ07   A0A0J7MX22   A0A2S2PJ67   A0A0J7K3R6   J9KRD0   A0A0J7KIM6   A0A0J7K3F1   A0A0J7KYD2   A0A0J7K840   A0A2S2P557   J9KZ24   A0A0J7KL06   A0A0J7KWU5   A0A0J7NCZ4   A0A0J7KPR0   X1WNM1   A0A0J7KPZ3   J9LAC1   A0A0J7KIW1   A0A2S2Q1A1   J9KLZ3   J9KJG8   J9LDW8   A0A0J7KMU1   A0A2S2PYG9   A0A0J7K4I2   X1WJY4   A0A2H8TIT6   A0A0J7KRU6   A0A0Q9WRU0  

KEGG

100127037    K22984 odorant receptor | (RefSeq) Or-46, BmOr-46, Or46; olfactory receptor 46

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676   GO:0050660   GO:0016614   GO:0046983  

Length:

253

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10803

Exp number, first 60 AAs:

0.10609

Total prob of N-in:

0.01549

outside

1  -  253

 

 

Pi

45.988142

Theta

38.711516

Tajima's D

0.087339

CLR

0.340726

CSRT

0.39698015099245

Interpretation

Uncertain