SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11221  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012596
Annotation
cuticular_protein_RR-1_motif_17_precursor_[Bombyx_mori]
Full name
Cuticle protein 3       + More
Cuticle protein 2      
Pupal cuticle protein 27      
Alternative Name
MS-PCP27
Location in the cell
Extracellular   Reliability : 1.813
 

Sequence

CDS
ATGCAATTGTTAGTGATCTCCGCTCTTTTCGGGCTGGCTGCCGCTGCTTACTCACCAGCTTACCCCGAGCAGTCGAACCGCCCTCAGGCTTCCTTCGAGAAGAACGCCAGAATCCTCGCCTTGGACTCTGATGTCAAAGAAGACTCCTTCAGATACAACTATGAAACGGAAAACGGCATCAAGGCTGAGGAACAAGGTCGCGAGGTCGACGGCATCGAAGCTCAAGGAGGTTTCCAATACACTGGCGATGATGGTCAAGTTTATGCTATCAGCTACGCAGCTGGTCAAGGCGGTTTCCAGGCCCAGGGCGCTCACATCCCTACTGCTCCCCCCACTCCTGAAGCTATCCTGAAGGCTTTGGAGCAGAACGCCCGAGATGAGGCCGCTGGCATCATCGATGACGGCCAGTACAACCCTGGAAAATACGGTGACGCTAGTTTCCCCCAGCAGCAGTACAGAGCGCAGGCCCAAGCGTCAGCCAGCTACAGACAGCCCTACAAGTACTAA
Protein
MQLLVISALFGLAAAAYSPAYPEQSNRPQASFEKNARILALDSDVKEDSFRYNYETENGIKAEEQGREVDGIEAQGGFQYTGDDGQVYAISYAAGQGGFQAQGAHIPTAPPTPEAILKALEQNARDEAAGIIDDGQYNPGKYGDASFPQQQYRAQAQASASYRQPYKY

Summary

Description
Component of the pupal abdominal endocuticle. May have important role in the pharate pupal cuticle structure.
Keywords
Cuticle   Direct protein sequencing   Signal  
Feature
chain  Cuticle protein 3
Pfam
PF00379   Chitin_bind_4
Interpro
IPR000618   Insect_cuticle        + More
IPR031311   CHIT_BIND_RR_consensus       

Ontologies

Topology

SignalP
Position:   1 - 16,         Likelihood:  0.985541
 
 
Length:
168
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.88634
Exp number, first 60 AAs:
0.88591
Total prob of N-in:
0.04876
outside
1  -  168
 
 

Population Genetic Test Statistics

Pi
238.584298
Theta
141.960172
Tajima's D
2.397249
CLR
0.580579
CSRT
0.932903354832258
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28467696 DEAAGIIDDGQYNPGK 100.00 3e-10
26822097 IIAIDSDVK 95.65 2e-09
28467696 AIEQNAR 95.65 2e-09
26822097 YGDASFPQQQYR 100.00 7e-05
28467696 DEAAGIFDDGSYRDAK 100.00 7e-05
28467696 YNYETENGIK 100.00 8e-05
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