Gene

KWMTBOMO11212  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007107

Annotation

TPR-repeat_protein_[Bombyx_mori]

Location

Bomo_Chr19(-):1095134-1103625      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.156

CDS

ATGAGTCAGCAGGTGAAACAGGAGAAATTGAGAGAAGAGGCACAATATGAGAAGGAGAGGGGTAACACATTTGTGAAACAAGAGAAGTGGGATGAAGCAATATCGTGCTACAACAGAGCCATTGAACTCGTCAAAGATGATGCCATATACTTTGCTAATCGAGGGTTTTGTTACTTGAAGAAGGATAGCCTTCACCAAGCAGAAGCGGACTGCACTGAAGCCCTTCGCCTCGACCCAACGTACGTGAAGGCGCTGCAACGCCGAGCCACCGCCCGGGAGAGGCTGGGCTCGCTGCGGTCGGCGTCCCAGGATCTCGCTCAAGTACTCCAGATTGAACCTCACAACAGCGCGGCTAGGAAACAGCTAGACGCCATAAGAGCTAGGATGGGGACAAAAGGGACAAAATCAAAGTCATCACCGTTATCTACTCCAATGATGGAAGCCAAACCGGTATCTCCAAAGTGCTCGGAACAAAAAATCGTGCAAGTGTCCAATGATGTCACTGAGCAGCAAGAACCTATTGTGGATACTTGGAGGGAAGGAGTGGGTGAAGCAATTACTGTATTGAAGCCAGTGAAGAAACCACCACATTTGAGATCTAAGAGGCAACTTAAAACGATTCCAATTCACGAGATACAATTGGGTAAGACAACAGAGAAGTTATTGTCTCATCTAAATTTAATAGAGAACGAGGTAAATCAGCCCGATGAAACAGTTAACAATGAATCGAATAAAACTGGAACAGTCAACGATAAGGGTGCAGGTGACATATCTAGTCCTGAGTCGGTGAAGTTGATATCGGAGGCAGTGGCTACGGAGAAGGATGTGCAGAAACTGGTGGCGCCCGTCAATAGTGTTCAGTTCATGTCCCAGTGGAAGTACCTCAAAGGTCAAGACGAGATCAGAAGCTATTATTTGAGTATCATAGAGCCGTCCCGGATACCGTCGATGTTCGCGAACGCTCTGGAGAGCGACGTACTGTCGGAGCTCATCCGCGCGCTGCACGACCACGCGCCCAGCTTCCGCCACAGAACAGTCGCGGCCTACCTCACGGCGCTCACCCAAGTCAAGAGGTTCTCAGCGCTGGCGATGTTTCTCTCCGCCGCCGATAAGCGACATCTAAAAAATCTATTGGAGTACTGTAGGAACGAAGAGAAGTGCAGCGAGCAAGATATCGCCGAGCTAACGGAAAAGTATGAACTATGA

Protein

MSQQVKQEKLREEAQYEKERGNTFVKQEKWDEAISCYNRAIELVKDDAIYFANRGFCYLKKDSLHQAEADCTEALRLDPTYVKALQRRATARERLGSLRSASQDLAQVLQIEPHNSAARKQLDAIRARMGTKGTKSKSSPLSTPMMEAKPVSPKCSEQKIVQVSNDVTEQQEPIVDTWREGVGEAITVLKPVKKPPHLRSKRQLKTIPIHEIQLGKTTEKLLSHLNLIENEVNQPDETVNNESNKTGTVNDKGAGDISSPESVKLISEAVATEKDVQKLVAPVNSVQFMSQWKYLKGQDEIRSYYLSIIEPSRIPSMFANALESDVLSELIRALHDHAPSFRHRTVAAYLTALTQVKRFSALAMFLSAADKRHLKNLLEYCRNEEKCSEQDIAELTEKYEL

Uniprot

Q2F643   H9JC62   A0A2A4K1E9   A0A2A4K1T6   A0A2H1W639   A0A2W1BWN3   + More
A0A1E1VX77   S4PK56   A0A194QGQ2   A0A212FDM1   A0A194QVE1   A0A2H1WH00   A0A0L7L8N0   A0A067QUM4   A0A1Y1MDT3   A0A195F332   A0A0J7L2E1   A0A151XJD6   A0A1W4WM04   A0A195E014   A0A1B6CZH7   A0A195BGR4   F4X3T5   D6WQY6   A0A195C852   A0A1B6CMH6   A0A026WRY4   A0A158P044   E2B2E3   E1ZXL8   A0A0N0U5U3   A0A0L7RH35   A0A1B6MSF2   A0A1B6HH32   A0A154P3P9   A0A1B6EYR9   E0VMF1   N6TCV1   U4UJ23   J9JK14   A0A1S3H238   A0A2J7RIG6   A0A0K2TCV1   A0A2J7RIG0   A0A091QN00   A0A1A7X3H7   A0A091LAZ0   A0A3Q1IV15   A0A0P5JZG5   W5QDU5   A0A091PT12   A0A0P6GE42   A0A0P5LTD2   A0A0P6CKR5   A0A2I0MJL8   A0A0P4Y1Z6   A0A0P6DS13   A0A0P6DUQ8   A0A0P5ANW7   A0A2Y9N088   A0A0P5PYX5   A0A0P6FFG1   A0A0P5JTK4   A0A0P5CMQ2   A0A0P5Y9P8   A0A0P5R0X1   A0A0P5RRD7   A0A0P5NB22   A0A0N8DYV8   A0A093FSD2   A0A091UEQ5   A0A2U4BAA8   A0A2Y9RH56   F1N0V7   A0A232FGA0   W5NIG9   F1MFU5   A0A2C9K2Q7   A0A0N7ZYK7   A0A2C9K2R2   A0A2C9K2P5   A0A2C9K2P3   A0A2C9K2Q4   I3LXN3   A0A0P4ZCC7   L8HZG8   A0A0P5WWC8   A0A1V4JAI0   A0A1R3IUL7   A0A0B8RWG4   V4KII0   I3L777   I3JUF4   G3Q5W6   A0A1J3JDH4   U3IM12   A0A2K5CRH2   A0A0A0AA72  

Pubmed

19121390    28756777    23622113    26354079    22118469    26227816    + More
24845553    28004739    21719571    18362917    19820115    24508170    30249741    21347285    20798317    20566863    23537049    20809919    23371554    19393038    28648823    15562597    22751099    25476704    23518688    25186727    23749191   

EMBL

DQ311229    ABD36174.1    BABH01014947    BABH01014948    NWSH01000264    PCG77889.1    + More
PCG77888.1    ODYU01006582    SOQ48550.1    KZ149913    PZC78055.1    GDQN01011737    JAT79317.1    GAIX01004690    JAA87870.1    KQ459053    KPJ04115.1    AGBW02009043    OWR51798.1    KQ461073    KPJ09503.1    ODYU01008583    SOQ52307.1    JTDY01002201    KOB71888.1    KK853244    KDR09438.1    GEZM01037628    JAV82016.1    KQ981856    KYN34494.1    LBMM01001273    KMQ96604.1    KQ982074    KYQ60514.1    KQ979955    KYN18463.1    GEDC01018467    JAS18831.1    KQ976490    KYM83364.1    GL888624    EGI58882.1    KQ971351    EFA06488.1    KQ978081    KYM97069.1    GEDC01022666    GEDC01007836    JAS14632.1    JAS29462.1    KK107139    QOIP01000003    EZA57864.1    RLU25275.1    ADTU01005352    GL445135    EFN90132.1    GL435066    EFN74101.1    KQ435756    KOX76001.1    KQ414592    KOC70175.1    GEBQ01001154    JAT38823.1    GECU01033801    JAS73905.1    KQ434809    KZC06477.1    GECZ01026684    JAS43085.1    DS235307    EEB14557.1    APGK01034998    KB740923    ENN78134.1    KB632326    ERL92418.1    ABLF02008448    NEVH01003500    PNF40620.1    HACA01006036    CDW23397.1    PNF40621.1    KK665245    KFQ10829.1    HADW01011128    HADX01005645    SBP12528.1    KL310910    KFP53057.1    GDIQ01196961    JAK54764.1    AMGL01080556    KK677858    KFQ10403.1    GDIQ01044950    JAN49787.1    GDIQ01168564    JAK83161.1    GDIQ01090894    JAN03843.1    AKCR02000009    PKK29868.1    GDIP01234731    JAI88670.1    GDIQ01073159    JAN21578.1    GDIQ01075994    JAN18743.1    GDIP01199882    JAJ23520.1    GDIQ01121527    JAL30199.1    GDIQ01048421    JAN46316.1    GDIQ01195304    JAK56421.1    GDIP01169231    JAJ54171.1    GDIP01061051    JAM42664.1    GDIQ01109482    JAL42244.1    GDIQ01097092    JAL54634.1    GDIQ01144677    JAL07049.1    GDIQ01078404    JAN16333.1    KK402486    KFV60677.1    KK427742    KFQ88215.1    NNAY01000288    OXU29459.1    AHAT01037174    GDIP01199881    JAJ23521.1    AGTP01037231    AGTP01037232    GDIP01215984    JAJ07418.1    JH882468    ELR49251.1    GDIP01081547    JAM22168.1    LSYS01008398    OPJ68797.1    AWWV01009489    OMO86278.1    GBSH01002299    JAG66727.1    KI517881    ESQ29712.1    AEMK02000037    AERX01012896    GEVM01015497    JAU90441.1    ADON01007629    KL870977    KGL89860.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000027135    UP000078541    UP000036403    UP000075809    UP000192223    UP000078492    UP000078540    UP000007755    UP000007266    UP000078542    UP000053097    UP000279307    UP000005205    UP000008237    UP000000311    UP000053105    UP000053825    UP000076502    UP000009046    UP000019118    UP000030742    UP000007819    UP000085678    UP000235965    UP000265040    UP000002356    UP000053872    UP000248483    UP000245320    UP000248480    UP000009136    UP000215335    UP000018468    UP000076420    UP000005215    UP000190648    UP000188268    UP000030689    UP000008227    UP000005207    UP000007635    UP000016666    UP000233020    UP000053858   

PRIDE

Q2F643    H9JC62    I3L777   

Pfam

PF13877   RPAP3_C        + More
PF13181   TPR_8
PF14853   Fis1_TPR_C
PF07719   TPR_2
PF00515   TPR_1
PF13176   TPR_7

Interpro

IPR025986   RPAP3-like_C        + More
IPR013026   TPR-contain_dom       
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR028061   Fis1_TPR_C       
IPR013105   TPR_2       
IPR009003   Peptidase_S1_PA       
IPR001440   TPR_1       

SUPFAM

SSF48452   SSF48452        + More
SSF50494   SSF50494       

Gene 3D

1.25.40.10    

ProteinModelPortal

Q2F643   H9JC62   A0A2A4K1E9   A0A2A4K1T6   A0A2H1W639   A0A2W1BWN3   + More
A0A1E1VX77   S4PK56   A0A194QGQ2   A0A212FDM1   A0A194QVE1   A0A2H1WH00   A0A0L7L8N0   A0A067QUM4   A0A1Y1MDT3   A0A195F332   A0A0J7L2E1   A0A151XJD6   A0A1W4WM04   A0A195E014   A0A1B6CZH7   A0A195BGR4   F4X3T5   D6WQY6   A0A195C852   A0A1B6CMH6   A0A026WRY4   A0A158P044   E2B2E3   E1ZXL8   A0A0N0U5U3   A0A0L7RH35   A0A1B6MSF2   A0A1B6HH32   A0A154P3P9   A0A1B6EYR9   E0VMF1   N6TCV1   U4UJ23   J9JK14   A0A1S3H238   A0A2J7RIG6   A0A0K2TCV1   A0A2J7RIG0   A0A091QN00   A0A1A7X3H7   A0A091LAZ0   A0A3Q1IV15   A0A0P5JZG5   W5QDU5   A0A091PT12   A0A0P6GE42   A0A0P5LTD2   A0A0P6CKR5   A0A2I0MJL8   A0A0P4Y1Z6   A0A0P6DS13   A0A0P6DUQ8   A0A0P5ANW7   A0A2Y9N088   A0A0P5PYX5   A0A0P6FFG1   A0A0P5JTK4   A0A0P5CMQ2   A0A0P5Y9P8   A0A0P5R0X1   A0A0P5RRD7   A0A0P5NB22   A0A0N8DYV8   A0A093FSD2   A0A091UEQ5   A0A2U4BAA8   A0A2Y9RH56   F1N0V7   A0A232FGA0   W5NIG9   F1MFU5   A0A2C9K2Q7   A0A0N7ZYK7   A0A2C9K2R2   A0A2C9K2P5   A0A2C9K2P3   A0A2C9K2Q4   I3LXN3   A0A0P4ZCC7   L8HZG8   A0A0P5WWC8   A0A1V4JAI0   A0A1R3IUL7   A0A0B8RWG4   V4KII0   I3L777   I3JUF4   G3Q5W6   A0A1J3JDH4   U3IM12   A0A2K5CRH2   A0A0A0AA72  

PDB

6FO1     E-value=2.56092e-29,     Score=321

KEGG

693089    K23002 RNA polymerase II-associated protein 3 | (RefSeq) TPR-repeat protein

GO

GO:0004252   GO:0016485   GO:0005777   GO:0004386   GO:0005829   GO:0097255   GO:0005515   GO:0016614   GO:0050660   GO:0003676   GO:0016020   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Length:

401

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.08243

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02078

outside

1  -  401

 

 

Pi

170.911571

Theta

166.807146

Tajima's D

0.258614

CLR

18.027968

CSRT

0.443377831108445

Interpretation

Uncertain