Gene

KWMTBOMO11210

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr19(-):1032871-1034435      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.215 Mitochondrial   Reliability : 1.372 Nuclear   Reliability : 1.399

CDS

ATGAGGTTATCGCAGTCTAATTACCATCACGCCCTGACCCGCGACAACGTTGCGGCGTTGCGACGTCCGCAGCGCGCGATTGCGGTCAGGGCGGTTCGTGGATACCGCACCGTCTCGTTCGAGGCGGCGTGCGTGCTAGCTGGGACGCCTCCCTGGGACCTGGAAGCGGAGGCGCTCGCTGCGGATTACGCGTGGCGATGCGATCTCCGCTCCAGGGGGGAGCCGCGTCCTGGCGCGGTGGAAGTTCGAGCGCGGAAGCTTCAATCTCGGCGTGCCGTGCTCGAGGCGTGGTCTCGCCGCCTGGCGGACCCCGCCTACGGGCGACGGACCGTCGAGGCGATCCGCCCGGTCCTCTCGGACTGGGTGAATCGCGACCGAGGACGTCTCACCTTCCGAGCGACGCAGGTGCTCACGGGACACGGCTGTTTCGGTCGCTACCTGCACCTCGTCGCCCGGAGGGAGCCGACGCCGAAGTGCCACCACTGCAGTGGCTGCAACGAGGACACGGCGGAGCACACGCTCGCGTACTGCCCCGCTTTCGCGGAGCAGCGCCGCGTCCTCGTTGCAAAAATAGGACCGGACTTGTCGCTTCCGACCGTCGTGGCTACGATGCTCGGCAGCGACGAGTCCTGGCAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAACAGGAGAGGGAGAGCTCTTCTTCCCTCTCGGCGCCGTGCCGCCGCCGTCGGGCCGGGGGTCGGAGGAGGGCGTTTGTCCAGCTCCAGCCCCTATGA

Protein

MRLSQSNYHHALTRDNVAALRRPQRAIAVRAVRGYRTVSFEAACVLAGTPPWDLEAEALAADYAWRCDLRSRGEPRPGAVEVRARKLQSRRAVLEAWSRRLADPAYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVARREPTPKCHHCSGCNEDTAEHTLAYCPAFAEQRRVLVAKIGPDLSLPTVVATMLGSDESWQAMLDFCESTISQKEAAEQERESSSSLSAPCRRRRAGGRRRAFVQLQPL

Uniprot

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A2W1BSQ5   A0A2W1BDU5   + More
Q8MY27   Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   A0A0J7MZM4   A0A0J7N1D9   A0A3L8DDS1   A0A0J7KJB9   A0A0J7N7H9   A0A2H1WNZ5   A0A3S2LNH8   A0A3S2N998   A0A0J7KS67   A0A0J7KIY5   A0A194R5D3   O01419   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KCQ3   A0A0J7MY07   A0A0J7NEG9   A0A0J7KJ07   E2BVR6   A0A0J7KJG6   A0A0J7KIW1   A0A0J7KJH4   A0A0J7KYD2   A0A0J7KM81   A0A0J7KLT9   A0A0J7KQK3   A0A0J7KIM6   A0A0J7JZF7   J9KLZ3   A0A0J7JZ13   A0A3L8DDV9   A0A3L8D2G3   A0A2S2P488   A0A0J7MX22   A0A3L8DIL1   A0A0J7KHX7   A0A0Q9WRU0   A0A2S2P6S8   A0A0J7KQU9   A0A2H8TR36   A0A0J7NAV8   A0A0J7KWU5   A0A0J7K3R6   A0A0J7K840  

Pubmed

12644555    28756777    30249741    26354079    9092665    20798317    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    LBMM01009501    KMQ88083.1    + More
KZ150386    PZC71062.1    KZ149950    PZC76665.1    KZ150308    PZC71477.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    KZ149896    PZC78733.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    LBMM01012027    KMQ86470.1    QOIP01000009    RLU18544.1    LBMM01006538    KMQ90523.1    LBMM01008861    KMQ88580.1    ODYU01009945    SOQ54696.1    RSAL01003504    RVE40273.1    RSAL01000481    RVE41577.1    LBMM01003679    KMQ93242.1    LBMM01006954    KMQ90166.1    KQ460685    KPJ12887.1    D85594    BAA19776.1    LBMM01008682    KMQ88705.1    LBMM01024024    KMQ82631.1    LBMM01009494    KMQ88097.1    LBMM01014132    KMQ85305.1    LBMM01006110    KMQ90925.1    LBMM01006662    KMQ90413.1    GL450953    EFN80213.1    LBMM01006671    KMQ90407.1    LBMM01006725    KMQ90373.1    LBMM01006657    KMQ90417.1    LBMM01002052    KMQ95336.1    LBMM01005634    KMQ91349.1    LBMM01005733    KMQ91252.1    LBMM01004272    KMQ92618.1    LBMM01007036    KMQ90099.1    LBMM01019838    KMQ83439.1    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01019839    KMQ83438.1    QOIP01000010    RLU18098.1    QOIP01000031    RLU14697.1    GGMR01011682    MBY24301.1    LBMM01014909    KMQ85000.1    QOIP01000007    RLU20280.1    LBMM01007088    KMQ90053.1    CH963857    KRF98317.1    GGMR01012534    MBY25153.1    LBMM01004152    KMQ92762.1    GFXV01003903    MBW15708.1    LBMM01007425    KMQ89740.1    LBMM01002480    KMQ94776.1    LBMM01015018    KMQ84954.1    LBMM01011877    KMQ86578.1   

Proteomes

UP000036403    UP000279307    UP000283053    UP000053240    UP000008237    UP000007819    + More
UP000007798   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01553   Acyltransferase
PF01421   Reprolysin
PF07776   zf-AD
PF00096   zf-C2H2
PF03372   Exo_endo_phos
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR002123   Plipid/glycerol_acylTrfase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A0J7KCI1   A0A2W1B333   A0A2W1BSQ5   A0A2W1BDU5   + More
Q8MY27   Q8MY33   Q8MY31   Q8MY35   A0A2W1C3J5   A0A0J7MZM4   A0A0J7N1D9   A0A3L8DDS1   A0A0J7KJB9   A0A0J7N7H9   A0A2H1WNZ5   A0A3S2LNH8   A0A3S2N998   A0A0J7KS67   A0A0J7KIY5   A0A194R5D3   O01419   A0A0J7N7S8   A0A0J7JXN3   A0A0J7KCQ3   A0A0J7MY07   A0A0J7NEG9   A0A0J7KJ07   E2BVR6   A0A0J7KJG6   A0A0J7KIW1   A0A0J7KJH4   A0A0J7KYD2   A0A0J7KM81   A0A0J7KLT9   A0A0J7KQK3   A0A0J7KIM6   A0A0J7JZF7   J9KLZ3   A0A0J7JZ13   A0A3L8DDV9   A0A3L8D2G3   A0A2S2P488   A0A0J7MX22   A0A3L8DIL1   A0A0J7KHX7   A0A0Q9WRU0   A0A2S2P6S8   A0A0J7KQU9   A0A2H8TR36   A0A0J7NAV8   A0A0J7KWU5   A0A0J7K3R6   A0A0J7K840  

KEGG

101743754    no KO assigned | (RefSeq) uncharacterized LOC101743754

GO

GO:0003964   GO:0016746   GO:0016021   GO:0008270   GO:0003676  

Length:

260

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04416

Exp number, first 60 AAs:

0.01972

Total prob of N-in:

0.08969

outside

1  -  260

 

 

Pi

207.392854

Theta

77.805812

Tajima's D

4.51511

CLR

116.849781

CSRT

0.99990000499975

Interpretation

Possibly Balancing Selection