Silkworm Genome Informatics Database

Gene

KWMTBOMO11184 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA012657

Annotation

cuticular_protein_RR-1_motif_52_[Bombyx_mori]

Location

Bomo_Chr19(+):184058-189349 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.439 Nuclear Reliability : 1.571

CDS

ATGAATTACCTGATAATCTTCGCTTTAGCGGCGGTGGCAGCTGATCGACTCGACAAAGACCTGTACCTTCCCCCCCACGCTGGGTCTTCAGGAGGAGCCAGCGCAGGACTCCAAGGCCCACGAAACTCTGCTGGTAGTCACCAGGCTCTCACTGGAAGCCAATCTGGCCAGCCGGCTGAAATCTTGAGATATGACAATGAGATTAATGAAGATGGATACCATTACGCTTTTGAGACCAGCGATGGAACGAAAGCTGAGCAGGAAGGTCAGGTTGTGCCCGGAGCTAAACCAGAGGAAGGTTCTATAAACGTGAAAGGCTCTTTCTCCTACGTCGGTGATGATGGACAAACTTACTCAGTGTCTTATACCGCTGATGAGAACGGCTTCAGGCCTGAGGGAGCTCATCTGCCGACCGCGCCCCCGATACCAGAGGAAATCTTGAAGAGTTTACAGCTTACAGACACGAAGAGAGATCAGTACAGCAGCCAAAAGAGCAGTTACGACGCTGACGCCGGATACTAA

Protein

MNYLIIFALAAVAADRLDKDLYLPPHAGSSGGASAGLQGPRNSAGSHQALTGSQSGQPAEILRYDNEINEDGYHYAFETSDGTKAEQEGQVVPGAKPEEGSINVKGSFSYVGDDGQTYSVSYTADENGFRPEGAHLPTAPPIPEEILKSLQLTDTKRDQYSSQKSSYDADAGY

Uniprot

C0H6P4 A0A2W1BUK4 A0A2A4JM61 A0A2H1VL00 A0A212F1R4 A0A194QVL3 + More
A0A194QGP2 A0A1W4X996 A0A0K8T0L1 A0A0A9XYP8 A0A146MEE1 D6WB15 A0A2H1VWH7 A0A146LCV9 A0A2H1VVG3 A0A2H1VTR4 A0A2H1WD94 C0H6K4 A0A1W4XIR7

Pubmed

19121390 19280704 28756777 22118469 26354079 25401762 + More
26823975 18362917 19820115

EMBL

BABH01038931 BABH01038932 BR000553 FAA00555.1 KZ149913 PZC78041.1 + More
NWSH01001021 PCG73071.1 ODYU01003133 SOQ41510.1 AGBW02010826 OWR47679.1 KQ461073 KPJ09512.1 KQ459053 KPJ04105.1 GBRD01006880 JAG58941.1 GBHO01019621 JAG23983.1 GDHC01000535 JAQ18094.1 KQ971311 EEZ98926.1 ODYU01004870 SOQ45187.1 GDHC01014269 JAQ04360.1 ODYU01004671 SOQ44803.1 ODYU01004383 SOQ44203.1 ODYU01007880 SOQ51039.1 BABH01035915 BR000514 FAA00515.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053240 UP000053268 UP000192223 + More
UP000007266

PRIDE

C0H6P4 C0H6K4

Pfam

PF00379 Chitin_bind_4

Interpro

IPR000618 Insect_cuticle + More
IPR031311 CHIT_BIND_RR_consensus

ProteinModelPortal

C0H6P4 A0A2W1BUK4 A0A2A4JM61 A0A2H1VL00 A0A212F1R4 A0A194QVL3 + More
A0A194QGP2 A0A1W4X996 A0A0K8T0L1 A0A0A9XYP8 A0A146MEE1 D6WB15 A0A2H1VWH7 A0A146LCV9 A0A2H1VVG3 A0A2H1VTR4 A0A2H1WD94 C0H6K4 A0A1W4XIR7

KEGG

100379419 no KO assigned | (RefSeq) CPR52, BmorCPR52; cuticular protein RR-1 motif 52

GO

GO:0042302 GO:0006810 GO:0006468 GO:0007169 GO:0016020 GO:0005515 GO:0006811 GO:0005622 GO:0003824

SignalP

Position: 1 - 14, Likelihood: 0.961833

Length:

173

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00112

Exp number, first 60 AAs:

0.00112

Total prob of N-in:

0.03712

outside

1 - 173

Pi

255.793963

Theta

142.049643

Tajima's D

2.131232

CLR

0.432763

CSRT

0.902004899755012

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
26822097	AEQEGQVVPGAKPEEGSINVK	100.00	3e-09
28467696	YDNDVIFYIYNR	100.00	3e-09
26822097	IKEYDYTDVDKAR	100.00	6e-08
28467696	AEPTAEGATPTYTGAAVPIGSQPR	100.00	6e-08

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics