Gene

KWMTBOMO11179

Pre Gene Modal

BGIBMGA012639

Annotation

PREDICTED:_guanine_nucleotide_exchange_factor_subunit_Rich_[Bombyx_mori]

Location

Bomo_Chr19(-):124919-139165      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.151

CDS

ATGACATATTCTTCTTCGAACGAGGCTTGTGGAGAGTACTTAACGGTAGGTAACGGCGGCTTGGCTCTGCTCCTGGCATTGCTGAAGTCCATGGGCGACGGTAACCACTCACCATCAATTGGTGCTCGTCTGCCTACACGGGCGTACAGCTGTCTGCCGGCAACTGTGCTGGCTTCTTGCGTGGAGAGCGTTTGGTCGTGCGACAGCGGCGCGTCGGCCACGCAACTGTCGCGGGCGTTGTGGCTGTGGTGCGGCAGTCTTGGAGCCAGGGTGTGGCTGCCGCTGCTGCCGCGCGACGCCACGCGGCACCCGGACTCCGGAAGGCACACGTTCATGGCGAAGCGGATCATGCTGCCGTTCCATTTGAATATATATCCTCTCACTATACTCTTCGACGATGCGATCCTATTGGGTGCAGAGAACGACACTACACTGTACGCATCGGATTCGAATTCTGTATTCTCCCTGCCGTTTTGCGTGGTCAACAGGACTAGCCAAGTCTACCTTCATCAAATTCTAAGGCAGCTATTAAGAAGGAACCTTGGCTACCACGCCTGGGAGATAGCTCGGTCCTGCTCTCAGCTGGCTTACTTCCCGCACTCCTTAGAGCTACTCCTCCACGAGGTTCTGGAAGAGGAGGCAACCAGTAAAGAACCGATACCCGACGCTCAGCTGCCCAGCATCATAGAGTTTGTGCAGGAGTTTCCTGTCTATTTAGAAACAGTAGTACAGTGCGCGCGGAAGACAGAGATAGCGCTATGGGCATATTTGTTTTCGGCAGCAGGGAAACCCAAGGAGCTGTTCCAGCAATGTCTGCAGAGGAAAATGTTGGACACCGCCGCCTCCTACCTTATAATATTACAAAATCTAGAGAGTTCGACAGTGAGCAGACAACTGGCCACGCAGCTGCTGGACACCGCCCTGCAGCAGGAGAGGTGGGACCTCGCCAGAGATCTAGTCAGATTCCTCCGTGCCATAGATCCCAACGACGTGGAGTCTCCCCGCAACTCCGTGAACGTGCAAGCCAAGTACGGGCAGGTCGCGCAGTCGCAGGCCGTCAGCCCCAACGCCGAGGACCTCTCCGTCATACTGGGGACCATGCAGCTGGCAGGCGGGCGGGGCCGCAGCTTCAGCACGACGGTGTCGCCCCGGGAGCCCTCGCCCCCCGCGCCCGCCGCGCCCGCGCCCCCGCCGCCGCCCCCCGCGCGCGCCACCGCCGCCGTCAAACGGAAGAAGTCCGTGCCTGCGAGGAGCGAGAGGGAATCATACAACGGTACCGCCGAAGAATTCTTCATAGACATGATGATACAGAGGCACGCGCGACAGCTGCTCATCCGGGGGAGGCTGGCGTCGCTGGGCCGGCTGGCGGCGTCGCTGGACCTGCCGCTGGTGGGGTGGCTGGCGGCGGAGAGGGAGCGCGCGGCGAGGATGGACTGCGCCGTGCTGTGCCTGCGCAGGGTGCACAAGGACTTCTCGTGGCCCTACCCCGTGCGGGATGACGACGAGCCCAGCAGGAAGCTCAGCTTGTTGCCCGTGGACTCGCACAGCCCGGCGGCGGACGCGGAGAGCGCGTGCGGGGACAGCGGGTACGTGAGCCTGCCGCTGCGCACGCAGCCGCCCGGGCCCGTCAGCTCGGTGGGCGAGGGCAGCGTGGCGGAGGGCGGCGGCGTGTCGTGGGGCGACGCGCCCGAGCGCGAGGAGCGTCGCTACGCCGCGCTCATGGAGCGGCTGCACACGCACCAGGCGCGCAAGGGCGACCACGTGCCGCACGTGCAGCTAAGGTACTTCCTGCAGCTGATGACGGAGGCGTGCTGCGTGGAGTGGGCGCTGGTGGTGGCGGTGGTGCTGCGGGACGCGCTGGCCGTGCTGCGGACCACCAACGCGGCGCGCTCCGCCGACGTCACCGTGGACGCCGTGCGCAGGCTGCGCCGCGCGCTGCACGACCTCTGCGCCTGGGCAGAGTCCGAGTGTCAGGGCTACCGTCCCTTCATGTCGGCTATCAGCAACCAAATACCGTTCCTAACATCGATCATCAACGCTCGCGAGCGCCGCACCTCGATGGTGAAGACCCGCGTCCGGACCCCCAGCACCGGCTCCCTCAACCAGGACCCGAAGCCGAAACCCCAGCCGGTCATTGAACCGAAACTGCCGCAACCTCAGAAGGTTCAGGAGGTGAAGCGGAAGGAGTCTTCGGTGGCGGCCGTCGAGGTGTCGGAGGTGGTGAGCAGGCCGCTGAGAACGAACGCGCCATCGCGGGACGAAGTATCCACCGGTTGTGCCATTACGTAG

Protein

MTYSSSNEACGEYLTVGNGGLALLLALLKSMGDGNHSPSIGARLPTRAYSCLPATVLASCVESVWSCDSGASATQLSRALWLWCGSLGARVWLPLLPRDATRHPDSGRHTFMAKRIMLPFHLNIYPLTILFDDAILLGAENDTTLYASDSNSVFSLPFCVVNRTSQVYLHQILRQLLRRNLGYHAWEIARSCSQLAYFPHSLELLLHEVLEEEATSKEPIPDAQLPSIIEFVQEFPVYLETVVQCARKTEIALWAYLFSAAGKPKELFQQCLQRKMLDTAASYLIILQNLESSTVSRQLATQLLDTALQQERWDLARDLVRFLRAIDPNDVESPRNSVNVQAKYGQVAQSQAVSPNAEDLSVILGTMQLAGGRGRSFSTTVSPREPSPPAPAAPAPPPPPPARATAAVKRKKSVPARSERESYNGTAEEFFIDMMIQRHARQLLIRGRLASLGRLAASLDLPLVGWLAAERERAARMDCAVLCLRRVHKDFSWPYPVRDDDEPSRKLSLLPVDSHSPAADAESACGDSGYVSLPLRTQPPGPVSSVGEGSVAEGGGVSWGDAPEREERRYAALMERLHTHQARKGDHVPHVQLRYFLQLMTEACCVEWALVVAVVLRDALAVLRTTNAARSADVTVDAVRRLRRALHDLCAWAESECQGYRPFMSAISNQIPFLTSIINARERRTSMVKTRVRTPSTGSLNQDPKPKPQPVIEPKLPQPQKVQEVKRKESSVAAVEVSEVVSRPLRTNAPSRDEVSTGCAIT

Uniprot

A0A2A4JPU4   A0A2A4JRI2   A0A2H1WQR3   A0A194QW99   A0A212ELD2   A0A194QGE7   + More
E0VMH4   A0A2J7PZN6   A0A224X6H6   A0A023F237   A0A067R216   A0A146L4R2   U4UCH4   T1IEJ7   A0A088A5N1   A0A2A3E3I9   A0A0N0U6N7   A0A310SQP1   J9JZW0   A0A2H8TJF4   A0A2S2Q790   B0X7B2   A0A2S2P1Q1   Q7PME0   E2A253   A0A2P8YV76   A0A336KTY2   E9GHP8   B4QKR4   A0A1I8MER0   A0A1S3JAU3   B4MN97   A0A0L0BXD3   A0A3B0JZ49   W8BI14   Q29DM2   B4H8N9   B4IAZ2   B4PI63   A0A0J9RZR2   A0A1W4VBD9  

Pubmed

26354079    22118469    20566863    25474469    24845553    26823975    + More
23537049    12364791    20798317    29403074    21292972    17994087    25315136    26108605    24495485    15632085    23185243    17550304    22936249   

EMBL

NWSH01000823    PCG74021.1    PCG74022.1    ODYU01010336    SOQ55368.1    KQ461073    + More
KPJ09579.1    AGBW02014073    OWR42310.1    KQ459053    KPJ04030.1    DS235308    EEB14580.1    NEVH01020333    PNF21795.1    GFTR01008380    JAW08046.1    GBBI01003075    JAC15637.1    KK852981    KDR12929.1    GDHC01015145    JAQ03484.1    KB632197    ERL90008.1    ACPB03017602    KZ288400    PBC26275.1    KQ435732    KOX77544.1    KQ760116    OAD61956.1    ABLF02020910    GFXV01001613    MBW13418.1    GGMS01004395    MBY73598.1    DS232445    EDS41856.1    GGMR01010774    MBY23393.1    AAAB01008980    EAA13960.5    GL435917    EFN72501.1    PYGN01000340    PSN48149.1    UFQS01000941    UFQT01000941    SSX07891.1    SSX28125.1    GL732545    EFX80877.1    CM000363    EDX11479.1    CH963847    EDW72606.1    JRES01001184    KNC24707.1    OUUW01000002    SPP76388.1    GAMC01009982    JAB96573.1    CH379070    EAL30392.1    KRT08891.1    KRT08892.1    CH479224    EDW35082.1    CH480826    EDW44455.1    CM000159    EDW95511.2    KRK02475.1    KRK02476.1    KRK02477.1    CM002912    KMZ01152.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000053268    UP000009046    UP000235965    + More
UP000027135    UP000030742    UP000015103    UP000005203    UP000242457    UP000053105    UP000007819    UP000002320    UP000007062    UP000000311    UP000245037    UP000000305    UP000000304    UP000095301    UP000085678    UP000007798    UP000037069    UP000268350    UP000001819    UP000008744    UP000001292    UP000002282    UP000192221   

Pfam

PF07064   RIC1

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR040096   Ric1       
IPR009771   Ribosome_control_1       
IPR011044   Quino_amine_DH_bsu       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR001936   RasGAP_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF50969   SSF50969       
SSF50998   SSF50998       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2A4JPU4   A0A2A4JRI2   A0A2H1WQR3   A0A194QW99   A0A212ELD2   A0A194QGE7   + More
E0VMH4   A0A2J7PZN6   A0A224X6H6   A0A023F237   A0A067R216   A0A146L4R2   U4UCH4   T1IEJ7   A0A088A5N1   A0A2A3E3I9   A0A0N0U6N7   A0A310SQP1   J9JZW0   A0A2H8TJF4   A0A2S2Q790   B0X7B2   A0A2S2P1Q1   Q7PME0   E2A253   A0A2P8YV76   A0A336KTY2   E9GHP8   B4QKR4   A0A1I8MER0   A0A1S3JAU3   B4MN97   A0A0L0BXD3   A0A3B0JZ49   W8BI14   Q29DM2   B4H8N9   B4IAZ2   B4PI63   A0A0J9RZR2   A0A1W4VBD9  

KEGG

101740281    K20476 RAB6A-GEF complex partner protein 1 | (RefSeq) guanine nucleotide exchange factor subunit Ric

GO

GO:0006886   GO:0034066   GO:0017137   GO:0017112   GO:0000139   GO:0042147   GO:0005829   GO:0043087   GO:0045467   GO:0043547   GO:0007411   GO:0032483   GO:0035418   GO:0050808   GO:0031410   GO:0060078  

PANTHER

PTHR22746  

Length:

762

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.74723000000001

Exp number, first 60 AAs:

2.46205

Total prob of N-in:

0.14737

outside

1  -  762

 

 

Pi

221.71699

Theta

167.686961

Tajima's D

1.254988

CLR

0.301383

CSRT

0.728963551822409

Interpretation

Uncertain