Gene

KWMTBOMO11168

Pre Gene Modal

BGIBMGA007302

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(+):15555242-15556536      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.721

CDS

ATGAATATACGATCAATGCTTTGGGATCAATGTGGTTCAAGTGAAGCGAACTGGAACAATCTGAAAAAGGTTGTACTGGATACGGCTAAACAAAGCAGAGATCTACACAAAGCAGTTCCTAAACATGAAAAATGGATTAGCAAGGAGTCATGGATGTTGATAGAGGAAAGGAAAAGACTAAAAGAACAAGGCATTGTAAACAATAGTCAAAAGGAGCGCTACAATCAATTGCATGCAGAGATTCAAATGTCTACTCGGAGAGACAGAGATGAGCACATGAACAATATATGTGAAGAAATTGAGGGACATGCTGATAAAGTGCAGACTAAGGACCTTTTCCTGAAAGTGAAGCAGCTAACAGGTGTCTTCAAGCCGAATAAATGGGTTATCGAAGATAGTAGAGGTAACACCTTGACAGAAATGGAACATGTTTTGGAGAGGTGGAGAAACTACTGTTATGACCTATATCGCGATGAAGACAATTTATGCACCGTCAAAAGATGGGATGACCACCTGGAAGAGCCTCCTATACTACTTTCTGAGGTTGAATATGCAATACAAAAACTTAAGCACAAGGTGGTTGGTCCGGATGGCGTGTCGGCAGCGATGCTTCAAAGTCTCGGTTCAGAAGGGATAAACATTATCCATCAGATATGTACCAAGATCTGGAAAACAGGCCAATGGCCCAGTGATTGGACAAAATCTGCAATAGTACCACTTCATAAGAAAGGCTCCACAGCGAAGTGTGAGAACTACCGAACTCTGTCGCTCATGTCCCACGCGAGTAAAATACTCCTTCGCATAATAAACAGCAGACTATCAGCTTTCATAGACCACCAGATACCAAGAGAACAGGCTGGTTTTGTAGCTGGAAAAGGAACTCGCAAGCAAATTTTGAACGTCCGAGTGCTCATTGAGAAATTTCGCGAGTTTAACAAGTCTCTGGTGCTATGCTTTATAGATTATGCGAAGGCGTTTGACTGTGTTCAGTGGAGTAGCATGTTTGATGTGTTGATTGATATGGGCGTTCCTTCTCATCTCACACTACTGATACGGAATCTGTACCTTGATGGCTCTTGCTTCGTGAAACTAGATAATCGAAGATCTAAACCCTTCCATACAGAACGTGGAGTGCGTCAGGGCTGCATTCTGTCACCCAAATTATTTAATATCTACGGCGAATATATAATAACAAGAGCACTTGAAAGCTGGAACGGCGGTATTTCCGTGGGCGGTGAACACTCACAAACCTGA

Protein

MNIRSMLWDQCGSSEANWNNLKKVVLDTAKQSRDLHKAVPKHEKWISKESWMLIEERKRLKEQGIVNNSQKERYNQLHAEIQMSTRRDRDEHMNNICEEIEGHADKVQTKDLFLKVKQLTGVFKPNKWVIEDSRGNTLTEMEHVLERWRNYCYDLYRDEDNLCTVKRWDDHLEEPPILLSEVEYAIQKLKHKVVGPDGVSAAMLQSLGSEGINIIHQICTKIWKTGQWPSDWTKSAIVPLHKKGSTAKCENYRTLSLMSHASKILLRIINSRLSAFIDHQIPREQAGFVAGKGTRKQILNVRVLIEKFREFNKSLVLCFIDYAKAFDCVQWSSMFDVLIDMGVPSHLTLLIRNLYLDGSCFVKLDNRRSKPFHTERGVRQGCILSPKLFNIYGEYIITRALESWNGGISVGGEHSQT

Uniprot

D5LB39   D7F174   A0A2W1BNH4   D7F163   D7F161   D7F172   + More
D7F168   A0A2W1BGD9   D7F162   D7F167   D7F175   A0A0J7KGF7   H3B2Y3   A0A023GD30   A0A3Q1MM54   A0A3Q1NB54   A0A3Q1M6J7   A0A3Q1MLZ9   A0A3Q1MD43   A0A2H6KKM9   A0A3Q1LR34   A0A3Q1M8F7   A0A3Q1M6V6   A0A3Q1LWK2   A0A3Q1MLF3   A0A3Q1MEP7   A0A3Q1MKR5   A0A3Q1LQN1   A0A3Q1M0W5   A0A3Q1LLN0   A0A3Q1M527   A0A3Q1N0I8   A0A3Q1MHQ1   A0A3Q1LHS3   A0A3Q1MGI7   A0A3Q1MEQ0   A0A3Q1M112   A0A3Q1MS18   A0A085NA39   A0A3Q1LV84   A0A3Q1NFT8   A0A3Q1LX64   W5PYH4   A0A3Q1MC99   A0A3Q1M4W4   A0A0B1PP52   A0A3Q1M5Q8   A0A3Q1M543   A0A3Q1LUF2   A0A3Q1MGH6   A0A3Q1LZI9   A0A3Q1MCP5   A0A3Q1MHP2   A0A3S3P648   A0A3Q1MS12   A0A3Q1MJK8   A0A3Q1MC12   W5P980   A0A3Q1MLX8   A0A3Q1ML03   A0A3Q1NL67   A0A3Q1M8D1   A0A3Q1LI58   A0A3Q1LXQ5   A0A3Q1LWQ9   A0A023G4L3   A0A3Q1LWF9   A0A3Q1MMW6   A0A3Q1M8K5   A0A3Q1LR83   A0A3Q1LIW6   A0A3Q1MJ26   A0A3Q1N3Y9   A0A3Q1MI91   A0A3Q1M1T7   A0A3Q1M060   A0A3Q1N2X2   A0A3Q1LRJ0   A0A3Q1MDV2   A0A3Q1LVS6   A0A3Q1MP18   A0A3Q1MDF1   A0A3Q1MQ02   A0A3Q1M6I4  

Pubmed

20470440    28756777    9215903    19393038    29078748    24929829    + More
20809919   

EMBL

GU815090    ADF18553.1    FJ265559    ADI61827.1    KZ150025    PZC74827.1    + More
FJ265548    ADI61816.1    FJ265546    ADI61814.1    FJ265557    ADI61825.1    FJ265553    ADI61821.1    KZ150203    PZC72267.1    FJ265547    ADI61815.1    FJ265552    ADI61820.1    FJ265560    ADI61828.1    LBMM01007694    KMQ89503.1    AFYH01119920    GBBM01003639    JAC31779.1    BDSA01000081    GBE63537.1    KL367526    KFD66335.1    AMGL01037931    AMGL01037932    AMGL01037933    AMGL01037934    AMGL01037935    AMGL01037936    AMGL01037937    AMGL01037938    AMGL01037939    AMGL01037940    KN538403    KHJ42451.1    NCKU01004395    RWS06003.1    AMGL01013224    AMGL01013225    GBBM01006247    JAC29171.1   

Proteomes

UP000036403    UP000008672    UP000009136    UP000002356    UP000285301   

PRIDE

D5LB39    D7F174    D7F163    D7F161    D7F172    D7F168    + More
D7F162    D7F167    D7F175   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR002138   Pept_C14_p10       
IPR027124   Swc5/CFDP2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D5LB39   D7F174   A0A2W1BNH4   D7F163   D7F161   D7F172   + More
D7F168   A0A2W1BGD9   D7F162   D7F167   D7F175   A0A0J7KGF7   H3B2Y3   A0A023GD30   A0A3Q1MM54   A0A3Q1NB54   A0A3Q1M6J7   A0A3Q1MLZ9   A0A3Q1MD43   A0A2H6KKM9   A0A3Q1LR34   A0A3Q1M8F7   A0A3Q1M6V6   A0A3Q1LWK2   A0A3Q1MLF3   A0A3Q1MEP7   A0A3Q1MKR5   A0A3Q1LQN1   A0A3Q1M0W5   A0A3Q1LLN0   A0A3Q1M527   A0A3Q1N0I8   A0A3Q1MHQ1   A0A3Q1LHS3   A0A3Q1MGI7   A0A3Q1MEQ0   A0A3Q1M112   A0A3Q1MS18   A0A085NA39   A0A3Q1LV84   A0A3Q1NFT8   A0A3Q1LX64   W5PYH4   A0A3Q1MC99   A0A3Q1M4W4   A0A0B1PP52   A0A3Q1M5Q8   A0A3Q1M543   A0A3Q1LUF2   A0A3Q1MGH6   A0A3Q1LZI9   A0A3Q1MCP5   A0A3Q1MHP2   A0A3S3P648   A0A3Q1MS12   A0A3Q1MJK8   A0A3Q1MC12   W5P980   A0A3Q1MLX8   A0A3Q1ML03   A0A3Q1NL67   A0A3Q1M8D1   A0A3Q1LI58   A0A3Q1LXQ5   A0A3Q1LWQ9   A0A023G4L3   A0A3Q1LWF9   A0A3Q1MMW6   A0A3Q1M8K5   A0A3Q1LR83   A0A3Q1LIW6   A0A3Q1MJ26   A0A3Q1N3Y9   A0A3Q1MI91   A0A3Q1M1T7   A0A3Q1M060   A0A3Q1N2X2   A0A3Q1LRJ0   A0A3Q1MDV2   A0A3Q1LVS6   A0A3Q1MP18   A0A3Q1MDF1   A0A3Q1MQ02   A0A3Q1M6I4  

KEGG

101736473    no KO assigned | (RefSeq) single-minded homolog 2

GO

GO:0004519   GO:0003964   GO:0004197  

PANTHER

PTHR23227  

Length:

417

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02081

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01066

outside

1  -  417

 

 

Pi

0.052311

Theta

0.823916

Tajima's D

-1.729982

CLR

123.555933

CSRT

0

Interpretation

Uncertain