SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11160  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008596
Annotation
PREDICTED:_nuclear_valosin-containing_protein-like_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 2.504
 

Sequence

CDS
ATGGCGCGTTCTCTGAAAGAGCGGTACCGCGAGTATAACAATAGGAGCGACACTGCCTTCTGTCAGATGGTCGAAGCTGCGTACAAGGTTGTACTACAGAGTTACGGCCTCGACGGAGCGTCCACATCAGATGGGTCGGAGGAAGAGTCAGATTTAGAATTGTTAGACGAAAACACCAGTGCGTTAAACGAACGTATATTGGCCATGTACAAAATGCAAGATAAAAAACGTCCGGCTGCGAGTCGGCGCCCCACCGACAAGGCAGGCGAGCCTATCGACATCTTGAGCAGCGATGAAGACGGCAGTGCGGCTCCCAAATTACCTAAAATTAACGACCAAATAACTATCACACCACATATCCCAGCCAGAACTAACAGCACGGCGATTGAGAGTGCACTCAAACAACAAAACCAACCACTTGATAAAAAACGTAAGCTTGACAGCAATAAAAGTGGAGCACCGAAGAAAAAACATGAGACTGGATCAGCAAAAATGGTTAAAATAGGTTTTGAGGATATTGGTGGTCTTTCTGACATCATTACCCAGATCTGCGACTTGATATTACACATGAAACACCCTGAAGTATATAGTAAATTGGGAATTAAAGCACCCAGAGGAGCATTACTACATGGCCCTCCGGGGACGGGTAAAACCTTATTAGCACATGCAATAGCAGGTAAACTGCAGTTACCTCTTGTTTCTGTGACTGGAACTGAATTAGTTGGAGGTGTGTCTGGCGAGTCGGAAGAGAGAATTAGAGAGTTGTTTGAGAGAGCTCAAGCTGCCGCACCAAGTGTGTTGTTTATTGATGAAATTGATGCAGTTTGTGGTAACCGAATACATGCACAAAAAGACATGGAAAAACGTATGGTTGCTCAATTACTGGCTAGTTTAGATAGTTTGAGTGAAAATAACTCTTCAGTTTTAGTTCTTGCAGCTACAAATAACCCTGATGCCTTAGATCCTGCTTTGAGAAGGGCAGGTCGCCTAGAGCAAGAGATTACTTTAGGTATCCCTACATTAAAGGCTAGGAAAGAAATAATAAACATTCTCTGTAAAAACATAACGTTGAGTGAAGATGTGGACATGAACATTTTAGCTCAAGTCACTCCCGGTTTCGTTGGAGCTGATTTACAAGCTCTGGTGAACAAAGCTAGCACATATGCAGTGAAAAGGATATTTAGTGAAATTCATGCAGAAGAATTAAAAGCTAGTAAAGAAGTCATTAAAGTTGATTCAAATAATGATGAGATCGCTATTGTATCAAATGGTGAAAAAGAAAGTGAAGACAAAAATAAAGAAAATGAGACAACGGATGATGTAGCTAAACCTACAGAGGAGCAGCTACCTATTGAACCAATAACTAATGAGGCAAACAAGGATATTACAGAAGGACAGGAAGAGAATGTAAGCAGTAACCCTCCAGAAAAACTTAGCATTGTTGATGAAGTTTTAGAGCTTCTCAATGTCAGGCCATACAGCGTAGACAAATTATCAGGCCTTGCCATTAAACAAGAAGATTTTTTGAAAGCTTTAAAAACCACAAAACCTTGTGCTGTAAGGGAGGGTATTGTGACTGTCCCAGATGTAACATGGGATGATGTGGGGTCGTTAAAGCAAGTCCGCAAGGATTTACAACTGGCTGTACTTGGTCCAGTTAAATACCCAGAACTCTTAAACAGCTTAGGACTGTCTGCGGCGAGCGGTGTGCTTCTTTGTGGTCCACCAGGATGCGGTAAAACTTTGCTGGCAAAAGCAGTGGCCAATGAAGCTGGCGTTAATTTTATCTCAGTTAAGGGTCCTGAGCTGCTCAATATGTACGTGGGTGAGAGCGAGCGCGCCGTCAGGACTTGCTTCCGTCGAGCTCGGAACTCGGCACCCTGCGTTATATTCTTTGATGAGTTTGATGCGCTCTGTCCGCGACGAACGTCACGCGATCACGACGGTGCGGCTCGCGTCGTCAACCAGCTCCTTACTGAGATGGACGGCATCGAAGGGCGCGAGGGCGTGTTCGTACTCGCAGCCTCCAACCGACCGGACATTATAGATCCCGCCGTACTGCGGCCCGGCAGACTCGACCGCGTTATGTACGTCGGCATGCCGGCCCGGGACGATCGAAGCGATATCCTCGTCAAGCTCACCAAGGGAGGATCTCGGCCGCGCCTGGCTGCCGACGTGGACCTGCACGAGGTGGCGGGGCTCACCGACGGGTACACAGGTGCCGACCTGGGCGGACTGGTGCGGACTGCGGCCACGCTAGCATTGAGCGAGCTCATCGCCGAGGGTCGCGGGGCGGACGCCGACGTGTCGGTGCGCGCCGAGCACTTTCGTGCGGCCCTAGCGCGCTGCAAACCTTCCGTTTCGGCGAAGGAGCAGCTTCATTACGAGAAGCTAAGGATGAAATACGCATCTGGAGCAGACGACAGGGACATGGAGATGGAGACGGAGCCGCTGGTGGAGGAGTCGATGGACACCGTGTGA
Protein
MARSLKERYREYNNRSDTAFCQMVEAAYKVVLQSYGLDGASTSDGSEEESDLELLDENTSALNERILAMYKMQDKKRPAASRRPTDKAGEPIDILSSDEDGSAAPKLPKINDQITITPHIPARTNSTAIESALKQQNQPLDKKRKLDSNKSGAPKKKHETGSAKMVKIGFEDIGGLSDIITQICDLILHMKHPEVYSKLGIKAPRGALLHGPPGTGKTLLAHAIAGKLQLPLVSVTGTELVGGVSGESEERIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQLLASLDSLSENNSSVLVLAATNNPDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGADLQALVNKASTYAVKRIFSEIHAEELKASKEVIKVDSNNDEIAIVSNGEKESEDKNKENETTDDVAKPTEEQLPIEPITNEANKDITEGQEENVSSNPPEKLSIVDEVLELLNVRPYSVDKLSGLAIKQEDFLKALKTTKPCAVREGIVTVPDVTWDDVGSLKQVRKDLQLAVLGPVKYPELLNSLGLSAASGVLLCGPPGCGKTLLAKAVANEAGVNFISVKGPELLNMYVGESERAVRTCFRRARNSAPCVIFFDEFDALCPRRTSRDHDGAARVVNQLLTEMDGIEGREGVFVLAASNRPDIIDPAVLRPGRLDRVMYVGMPARDDRSDILVKLTKGGSRPRLAADVDLHEVAGLTDGYTGADLGGLVRTAATLALSELIAEGRGADADVSVRAEHFRAALARCKPSVSAKEQLHYEKLRMKYASGADDRDMEMETEPLVEESMDTV

Summary

Similarity
Belongs to the AAA ATPase family.
EMBL
BABH01033563    BABH01033564    ODYU01007436    SOQ50213.1    JTDY01000391    KOB77397.1    + More
KQ460154    KPJ17260.1    KQ458880    KPJ04611.1    GAIX01004465    JAA88095.1    CVRI01000075    CRL08317.1    KQ971321    EEZ99985.1    GEZM01002092    JAV97372.1    CCAG010004976    JXJN01026428    KA648204    AFP62833.1    CCAG010004424    GL448530    EFN84409.1    JRES01000080    KNC34336.1    PYGN01001996    PSN31892.1    OUUW01000002    SPP77177.1    GECZ01001191    JAS68578.1    ADTU01002754    GEDC01014982    GEDC01002839    JAS22316.1    JAS34459.1    GEDC01000683    JAS36615.1    GECZ01018659    JAS51110.1    KK852411    KDR24474.1    NEVH01015825    PNF26579.1    KK107119    QOIP01000009    EZA58782.1    RLU18328.1    SPP77178.1    GL888112    EGI67251.1    GL443930    EFN61467.1    NEDP02004116    OWF46639.1    CH940647    EDW68991.2    CH933809    EDW17760.2    JT417153    AHH42276.1    AERX01042071    AKCR02000039    PKK24759.1    KL891754    KGL79090.1    GDAY02001656    JAV49771.1    GFTR01008117    JAW08309.1    LJIJ01000118    ODN02269.1    KK855491    PTY22810.1    KQ042127    KKF18771.1    GECZ01024404    JAS45365.1    MCGT01000005    ORX59716.1    KK384550    KFV50375.1    CP012525    ALC43327.1    LUGH01000475    OBZ84743.1    CCYT01000020    CEG71680.1    CEG71681.1    AMYB01000001    OAD07683.1    KV921344    ORE17866.1    KJ999714    AIT18235.1    CBTN010000046    CDH57446.1    PJQM01003677    RCH87634.1    CCYT01000217    CEG80560.1    KV922009    ORE03309.1    DF836354    GAN04479.1    KZ303861    PHZ08881.1    ACPB03000292    ACPB03000293    CAQQ02180757    CAQQ02180758    KE124079    EPB83236.1    LK023313    CDS03348.1    MCGE01000027    ORZ09612.1    LT551811    SAL97443.1    CH476733    EIE79008.1    LGAV01000001    KOS16112.1    LN725930    CEP11252.1    KQ257467    KNC96686.1    KV427626    KZT06140.1    MCFD01000004    ORX71310.1    KZ819634    PWN94327.1    MCFF01000004    ORZ27446.1    MCFE01000123    ORX97915.1    KZ819603    PWN35414.1    KI894018    OCF29956.1    QKYT01000003    RIA99505.1    KE651168    EEB09396.2    ML121529    RPB28522.1    KI669469    OCF54670.1    NBNE01000754    OWZ17423.1    LUEZ02000040    RDB26229.1    KV454538    ODV70039.1    LT671821    SHO75685.1    HE999552    CCU98469.1    ABSV01001543    EDZ70783.1    MCOG01000010    ORY81686.1   
Pfam
PF17862   AAA_lid_3        + More
PF00004   AAA
PF16725   Nucleolin_bd
PF01391   Collagen
PF01410   COLFI
PF00246   Peptidase_M14
Interpro
IPR027417   P-loop_NTPase        + More
IPR003960   ATPase_AAA_CS       
IPR003959   ATPase_AAA_core       
IPR041569   AAA_lid_3       
IPR003593   AAA+_ATPase       
IPR031996   NVL2_nucleolin-bd       
IPR038100   NLV2_N_sf       
IPR000885   Fib_collagen_C       
IPR008160   Collagen       
IPR034223   IGCP-like_CPD       
IPR000834   Peptidase_M14       
SUPFAM
SSF52540   SSF52540       
Gene 3D
PDB
6MAT     E-value=1.01722e-95,     Score=897

Ontologies

Topology

Length:
826
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00802999999999997
Exp number, first 60 AAs:
0.00142
Total prob of N-in:
0.00054
outside
1  -  826
 
 

Population Genetic Test Statistics

Pi
5.237239
Theta
7.499751
Tajima's D
-1.212859
CLR
12.685546
CSRT
0.0971451427428629
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
31250652 AKMLRRCSKHIQTLYRRQGQSIRFKSTTQTPKILAPLHATKLNQPRALVAHNQVASIHFTNPLLVEQDVTTPSFPDSVSEGDVKLDKKVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGETVKAGQKLFRLEITGEAPKKA 99.59 1e-171
26280517 APTIGQPAAIPQTVDK 95.24 5e-07
25044914 APYDQIIEIDISTIEPHVNGPFTPDIANPISK 95.24 5e-07
28467696 APYDPPSAPGIPK 95.24 5e-07
27530593 KILNTEPEESSSEEEEVPQTKQ 100.00 7e-07
27530593 KDDDWSSEGSDVDLKM 100.00 7e-07
27530593 KDDDWSSEGSDVDLKM 100.00 7e-07
26822097 GADADVSVR 100.00 0.002
26280517 SDSCEEADSESQYIFDK 100.00 0.002
28467696 SDTACFYFPVPGGDSVIFR 100.00 0.002
28556443 TNSTAIESALK 100.00 0.003
28556443 GPELLNMYVGESER 100.00 0.023
28556443 TAATLALSELIAEGR 100.00 0.023
28556443 GIQPYLPEVEER 100.00 0.033
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