Gene

KWMTBOMO11159

Pre Gene Modal

BGIBMGA008587

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]

Location

Bomo_Chr18(+):15196163-15201741      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.718

CDS

ATGTCACTTATATCAAATTTGAAATCCTTTGATGGAGAAAAGTGGTCAGTGTTCCAGGAACAGTTAGACTGTTTCTTTATCGTTAATGAAGTGTCCGATGAAAAAAAAGTACCACTATTAATCACTAAATTAGCACCCAAAGTTTATGAAGTCCTCTCTTATTTATGTAAACCAAAAAAACCACAGGATCTAAAATTTGACCAACTTTGTTTCAAGTTAGCAGCAAAATATGATCAAAAACTACCATCAGCCATTGAAAGAGCAAATTTCAGACAGCGGAACCAGGCACCGAATGAAAAAGTAGAAGATTACGTCTTGGAACTGAGGAAACTTGCTGCAAAATGTAACTTCAAAGATATGGAGGACCAAGTCAAAGAGAAACTAATGGACGGAGTGTCCTCAAAAATGATAAAGTTTGAATTGATGAAGAGTGCTGGTGATGCAACACTAGAAAGGTGTATTGAATTAGCCCGCACTGTTGAAGCAGCAATATTACAAACAAACGGGGCCACAAATGAAGTTGCGGAAATATTTGTCAGCAAATCAACCAATAAATCACCACAACAGCAAAGAAATACCTACCAACAAAAAAATCAATGTTACTGCTGCGGAAAATGGAACCACCTAAAGCGGGACTGCAGACTCAATAGAAAATATTGCTCTGAATGTGGAATTCAAGGACACATCTTCAGAATGTGTCCCAAGAAGCAAAGAAAAGTAAATGTTCTGCAGGAAGATAACCAACAAAAGGATAAAAATACAGATAATGAACCCACTGAGTTTGAACCAAAATATTATGAAACATATGCATGTAACACTGTGAGTAAAATACCACCTTACTACATAACCATAAAAATGGAGGAGTGTAAGCTACCATTTCAACTAGACACCGGCTCAGAAGTGACAGTAATCACGGAAAATGACAAAAATGACATTTTAATAAACCACGTACTGCAAGATTGTGACATAATATTTAAAAATTTCGATCAATCCACAACAAGGCCACTAGGCATAGTTCATAATATATCTGTAGAATATGGTAACAGAAGTGTTTACTTAAAAGCTTTTGTAGTAAAAAATAAGTCACCCCGCATAATAGGCAGAGATTGGCTAAACGCCTTAGATGCACAAAATAGTATAGAAAAAAAATTCGCAGCAGTATTCAGCCCAGGCTGGGGAAATTTCAAAGGCGATGTCATAAATTTAGTTTTGAAAAAGGAGGTAGAACCCAAGTGTTTACCAGTGAGACGCGTACCATATGCTCTTAAGGACAAAGTAAATAATGAAATAAAAAGATTATTGGACAATGGTAGGATCACAGTAGTAAAACACAGTAAATGGGGCACCCCTGTAGTACCAATTTTAAAATCGGATGGTTCAGTAAGATTGTGTGGAGATTACAAGTTAACAGTAAACAAGTGTTTGGAAGTAGATCATTTCCCTTTACCGCATGTTGAAGACATTATAAACACCCTACAAGGGGGCGAATATTACTGCGAATTGGACTTAAAAGAAGCATATTTGCAAGCGCCTTTAAGTTTAGAAAGCCAGGATTGCACAACCATTGTAACCGAGATAGGAACATACAAATATAATTATTTACCATATGGGGTCAGTTCAGGACCTGGTGCATTTCAGCGTCTAATGACTAAAAAGTTGGAAGGGTCGCGGCGCGGCGCGGCGGGCGTGTGCGTGCGGGCGCGGCGCGGCGGCGGGCGGGCGGCGCTGCTGCGGCGGCTGGCTCGCTGGCCGCGCCTGCACCACGACCGCCTCTCCTTCACCGTCGACGTCTTGTACCACTCGGACGAAGCCACGATCTTCAGAGTGGGCGGCGTCGTCAAATTGACGTCTGATTGTCTTGCTGACGAAGAAGAGATGATCTACTTCAGCAGGACCTTGGTGCTGAAGGCTGAAGGCACGACAGAATACAAGATACATAACGAAATGCTTTACTGGGACGAAGTCACCGACCAAACTGCAAAAGCCGCCTTCCAGGTAACGGAGGCATACAATTGA

Protein

MSLISNLKSFDGEKWSVFQEQLDCFFIVNEVSDEKKVPLLITKLAPKVYEVLSYLCKPKKPQDLKFDQLCFKLAAKYDQKLPSAIERANFRQRNQAPNEKVEDYVLELRKLAAKCNFKDMEDQVKEKLMDGVSSKMIKFELMKSAGDATLERCIELARTVEAAILQTNGATNEVAEIFVSKSTNKSPQQQRNTYQQKNQCYCCGKWNHLKRDCRLNRKYCSECGIQGHIFRMCPKKQRKVNVLQEDNQQKDKNTDNEPTEFEPKYYETYACNTVSKIPPYYITIKMEECKLPFQLDTGSEVTVITENDKNDILINHVLQDCDIIFKNFDQSTTRPLGIVHNISVEYGNRSVYLKAFVVKNKSPRIIGRDWLNALDAQNSIEKKFAAVFSPGWGNFKGDVINLVLKKEVEPKCLPVRRVPYALKDKVNNEIKRLLDNGRITVVKHSKWGTPVVPILKSDGSVRLCGDYKLTVNKCLEVDHFPLPHVEDIINTLQGGEYYCELDLKEAYLQAPLSLESQDCTTIVTEIGTYKYNYLPYGVSSGPGAFQRLMTKKLEGSRRGAAGVCVRARRGGGRAALLRRLARWPRLHHDRLSFTVDVLYHSDEATIFRVGGVVKLTSDCLADEEEMIYFSRTLVLKAEGTTEYKIHNEMLYWDEVTDQTAKAAFQVTEAYN

Uniprot

A0A3P8NHI5   A0A3P8QD94   A0A1B6DD07   A0A1B6CPB9   A0A1B6E6W0   A0A3Q1EQC9   + More
A0A1A8C840   A0A2S2PU23   A0A1X7TIE8   A0A1B6CK52   A0A3P8RGT3   A0A3R7GU59   A0A1A8FCH6   A0A3S0ZSV8   A0A131XQT5   A0A0J7KL04   A0A3P8Q506   A0A1E1XG22   A0A3P8NG55   A0A1X7TH22   A0A1Y1LPV1   A0A3B3H2N7   A0A2I4C6V0   X1XT86   A0A085NRB3   A0A1X7TR37   J9KFN3   A0A3B3R045   A0A267FRX0   J9KZ86   A0A3P8NEQ7   A0A085M8Q0   A0A085LTS7   X1WXW3   A0A1Y1KCE7   J9LDN7   A0A1Y1KIG3   A0A0V1LU74   A0A0V0TT39   A0A267GH18   A0A267EVG4   A2TGR4   J9KQR5   A0A3S2PB62   A0A267G4Q7   A0A0J7KF98   A2TGR5   A0A2R5LIR9   A0A1B8XWC1   A0A1S3J391   J9L709   A0A267F699   A0A1Y1NFA4   A0A1Y1MAK2   A0A3R7FFB4   A0A0J7KBM1   J9L142   X1WTX7   A0A2G8L891   A0A1Y1LR51   A0A2S2PLE8   A0A224Z2A6   A0A267F772   A0A2R2MK13   A0A267G5M8   A0A267GNB6   A0A293MR82   A0A3P8VSE7   K7JW34   A0A085MRV2   A0A085LME0   A0A1Y1LSF9   A0A1Y1LTC6   A0A085N4P6   A0A3S1BK89   A0A0V0RGX3   A0A085LV84   A0A0V1M0M6   A0A1Y1N2I4   A0A131Z1D5   A0A0A9WT47   A0A3P8VLQ9   A0A1W7R676   A0A0V0USX8   A0A1W7R6B8   A0A085LQ67   A0A085ND74   A0A0V1KNI7   A0A085LR60   A0A0V0RTT5   A0A2S2N957   A0A0V1M2E2   A0A085NBL6   A0A085M9N6   A0A0V0VH28   A0A0V1BVI1   A0A085MU81  

Pubmed

28503490    28004739    17554307    24929829    29240929    17694394    + More
20431018    26383154    29023486    28797301    24487278    20075255    26830274    25401762   

EMBL

GEDC01013717    JAS23581.1    GEDC01021971    JAS15327.1    GEDC01007675    GEDC01003661    + More
JAS29623.1    JAS33637.1    HADZ01011823    HAEA01016148    SBP75764.1    GGMR01020219    MBY32838.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    NIRI01002335    RJW62347.1    HAEB01010230    SBQ56757.1    RQTK01000185    RUS85038.1    GEFM01006397    JAP69399.1    LBMM01006119    KMQ90911.1    GFAC01001149    JAT98039.1    GEZM01051399    JAV74971.1    ABLF02012266    ABLF02012271    KL367479    KFD72009.1    ABLF02036937    NIVC01000860    PAA75827.1    ABLF02026830    ABLF02041879    KL363215    KFD53596.1    KL363295    KFD48373.1    ABLF02006499    GEZM01092768    GEZM01092767    JAV56467.1    ABLF02030002    GEZM01085308    JAV60010.1    JYDW01000004    KRZ62956.1    JYDJ01000151    KRX42156.1    NIVC01000363    PAA84717.1    NIVC01001652    PAA65446.1    EF199621    ABM90392.1    RSAL01000130    RVE46453.1    NIVC01000555    PAA80976.1    LBMM01008360    KMQ88942.1    EF199622    ABM90393.1    GGLE01005288    MBY09414.1    KV461060    OCA14951.1    ABLF02016687    ABLF02016690    NIVC01001377    PAA68677.1    GEZM01009753    JAV94337.1    GEZM01036245    JAV82862.1    NIRI01001696    RJW65585.1    LBMM01010146    KMQ87646.1    ABLF02012827    ABLF02012828    ABLF02015552    ABLF02041322    ABLF02008248    ABLF02008249    ABLF02008250    ABLF02035153    ABLF02037855    ABLF02037866    ABLF02061872    MRZV01000174    PIK56483.1    GEZM01050895    JAV75318.1    GGMR01017626    MBY30245.1    GFPF01012842    MAA23988.1    NIVC01001308    PAA69606.1    NIVC01000538    PAA81343.1    NIVC01000264    PAA86792.1    GFWV01017841    MAA42569.1    AAZX01023237    KL367711    KFD59948.1    KL363391    KFD46136.1    GEZM01051546    GEZM01051543    JAV74825.1    GEZM01051545    GEZM01051542    JAV74826.1    KL367556    KFD64442.1    RQTK01001807    RUS69146.1    JYDL01000185    KRX13745.1    KL363282    KFD48880.1    JYDO01000426    KRZ65264.1    GEZM01014356    JAV92133.1    GEDV01003323    JAP85234.1    GBHO01031997    JAG11607.1    GEHC01000976    JAV46669.1    JYDN01000181    KRX54109.1    GEHC01000975    JAV46670.1    KL363340    KFD47113.1    KL367515    KFD67420.1    JYDW01000348    KRZ48953.1    KL363326    KFD47456.1    JYDL01000080    KRX17894.1    GGMR01001051    MBY13670.1    JYDO01000284    KRZ65891.1    KL367520    KFD66862.1    KL363212    KFD53932.1    JYDN01000036    KRX62850.1    JYDH01000010    KRY40903.1    KL367649    KFD60777.1   

Proteomes

UP000265100    UP000257200    UP000007879    UP000271974    UP000036403    UP000001038    + More
UP000192220    UP000007819    UP000261540    UP000215902    UP000054721    UP000055048    UP000283053    UP000008143    UP000085678    UP000230750    UP000265120    UP000002358    UP000054630    UP000054843    UP000054681    UP000054776   

Pfam

PF00078   RVT_1        + More
PF00665   rve
PF17921   Integrase_H2C2
PF17919   RT_RNaseH_2
PF00098   zf-CCHC
PF00378   ECH_1
PF17917   RT_RNaseH
PF03732   Retrotrans_gag
PF00176   SNF2_N
PF00271   Helicase_C
PF05918   API5
PF05485   THAP
PF00077   RVP
PF07727   RVT_2
PF13976   gag_pre-integrs

Interpro

IPR021109   Peptidase_aspartic_dom_sf        + More
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR000477   RT_dom       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR001753   Enoyl-CoA_hydra/iso       
IPR029045   ClpP/crotonase-like_dom_sf       
IPR041373   RT_RNaseH       
IPR005162   Retrotrans_gag_dom       
IPR016024   ARM-type_fold       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR008383   API5       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       
IPR000330   SNF2_N       
IPR034128   K02A2.6-like       
IPR006612   THAP_Znf       
IPR018061   Retropepsins       
IPR009068   S15_NS1_RNA-bd       
IPR013103   RVT_2       
IPR025724   GAG-pre-integrase_dom       
IPR008936   Rho_GTPase_activation_prot       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF52096   SSF52096       
SSF52540   SSF52540       
SSF48371   SSF48371       
SSF47060   SSF47060       
SSF48350   SSF48350       

Gene 3D

2.40.70.10     3.30.420.10     3.40.50.10810    

CDD

cd00079  HELICc
cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A3P8NHI5   A0A3P8QD94   A0A1B6DD07   A0A1B6CPB9   A0A1B6E6W0   A0A3Q1EQC9   + More
A0A1A8C840   A0A2S2PU23   A0A1X7TIE8   A0A1B6CK52   A0A3P8RGT3   A0A3R7GU59   A0A1A8FCH6   A0A3S0ZSV8   A0A131XQT5   A0A0J7KL04   A0A3P8Q506   A0A1E1XG22   A0A3P8NG55   A0A1X7TH22   A0A1Y1LPV1   A0A3B3H2N7   A0A2I4C6V0   X1XT86   A0A085NRB3   A0A1X7TR37   J9KFN3   A0A3B3R045   A0A267FRX0   J9KZ86   A0A3P8NEQ7   A0A085M8Q0   A0A085LTS7   X1WXW3   A0A1Y1KCE7   J9LDN7   A0A1Y1KIG3   A0A0V1LU74   A0A0V0TT39   A0A267GH18   A0A267EVG4   A2TGR4   J9KQR5   A0A3S2PB62   A0A267G4Q7   A0A0J7KF98   A2TGR5   A0A2R5LIR9   A0A1B8XWC1   A0A1S3J391   J9L709   A0A267F699   A0A1Y1NFA4   A0A1Y1MAK2   A0A3R7FFB4   A0A0J7KBM1   J9L142   X1WTX7   A0A2G8L891   A0A1Y1LR51   A0A2S2PLE8   A0A224Z2A6   A0A267F772   A0A2R2MK13   A0A267G5M8   A0A267GNB6   A0A293MR82   A0A3P8VSE7   K7JW34   A0A085MRV2   A0A085LME0   A0A1Y1LSF9   A0A1Y1LTC6   A0A085N4P6   A0A3S1BK89   A0A0V0RGX3   A0A085LV84   A0A0V1M0M6   A0A1Y1N2I4   A0A131Z1D5   A0A0A9WT47   A0A3P8VLQ9   A0A1W7R676   A0A0V0USX8   A0A1W7R6B8   A0A085LQ67   A0A085ND74   A0A0V1KNI7   A0A085LR60   A0A0V0RTT5   A0A2S2N957   A0A0V1M2E2   A0A085NBL6   A0A085M9N6   A0A0V0VH28   A0A0V1BVI1   A0A085MU81  

PDB

4OL8     E-value=2.46979e-18,     Score=228

KEGG

101739167    K14284 nuclear RNA export factor | (RefSeq) nuclear RNA export factor 1-like

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)
03013    RNA transport - Bombyx mori (domestic silkworm)
03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0008270   GO:0003676   GO:0015074   GO:0004190   GO:0003964   GO:0005524   GO:0005634   GO:0003677   GO:0007165   GO:0006468   GO:0007169   GO:0016020   GO:0005515   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Length:

671

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00022

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00008

outside

1  -  671

 

 

Pi

4.333924

Theta

6.889869

Tajima's D

-1.364791

CLR

109.099853

CSRT

0.0736463176841158

Interpretation

Uncertain