Silkworm Genome Informatics Database

Gene

KWMTBOMO11158

Pre Gene Modal

BGIBMGA008586

Annotation

PREDICTED:_nuclear_RNA_export_factor_1-like_[Bombyx_mori]

Location

Bomo_Chr18(+):15184863-15195104 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.525

CDS

ATGAAAAAACGCAAAGCAAATTCTAACCTCATAAGAGTTACAAATAATATTGTACCTATAAAGCCTAAAAGTGTTCCTGCACCAGCTGGGAACAAGATGCCGATTTGGGAGCCTCGTCAACCGAATGCCGAAAAAACACACATGCAAGCTCAGACCTCAGCGATATCAAATCCCAATATTATGCAGATGAACAATATCCCTTTCTCAACAAGTTTGACTGCACCTGCAGAGAACAATATGCCGGTGTGGGAGCTTCAACAGCCCAATATCACAGGAGTACAAGAGAGTCCCTTCCGACTTCAGCTGAATCCGACACCCCAAACAACACCAATGTTGCCAAACTTCCAACATCCGCCCCACGAACAAATGCAATACCGACCTCAGTTGCCTATTCACATACACAACGACCTGAGATCTTTTGTCCCGCCCACACTTGGAGTTCAGCCATCACCAAACTTCGAATCTATACTGCAGCAGCAACAGTTACCGATAATACAAACTATACCTCCAACGCAAGCAATGTTTACGCAACCTTTGCCATCAACATCAGCAATGCAACTTCCGCAACTGATACCATCGGCACAACTAATGCAGCCTGCGCAACCAGTGCTGTCAGTGCCACTCGCGCCACTCATGCCGTCACCACACCCCATGCCCGCACCGCTGCCGGTGCCGCCACCGCAGCCACAGGCCCCCTTCCCGCCGAGACAACAAACATCAGCGGAGAGCCATGTGATCGCGTCCCATCAGAACCCATCTGCGCGGGACGCGTGCGTCGAACCTCCGAACTACGCAGCCTTGGATACTTTACAAGAAACAGAAGACAGTAGACAATCGACATCACGGGACCCACCAGGGGCGTCCCTAAATAAACGAGCGGCCCCCCACAAGCGGAGTGCGGCGGAAAAGCAGAAGAAACAGAAACTAACCACACATTTGAGATCCGAAAACACTCAAAGACCCCAGCAAGTAGGTAAACCAACAACGTCCAGTGAGTTCACCCCGGTCCATCTCCGCGAGGACGTGCGGGCCAGCACGGAGCCCGTGGTGATGCGGTACCTCATGTCTTGGCCGTGGAAGAACGAAGTCAGGATTAAAGCTTCTGCGACAGTCAGACACTCCAAGTCGCAGATGATAGCGGAGCAAGAGCTGATGGAACAGCAGTACAGCGACCCGGCGCAGTTCTTCCAGGTGTCGGTGCGCGGGCACGGCGCCGCCCGCCCGGAGCCCGTGCTGGACGCGCTGCTGGCCAGCGTGCGCGGACGCAGCCTCATCCCCTGCTTCGTCCAGTTGACGGAAGACGAATGCAAGTTCCTCGTGATTCGCTGCAAGACGGCGCTGCTGGCCATACACAAGTACGGGTTCGTGCTGGGCGGCGACGGCGCGCGCATGACGGTCACCGTCTCCGCGGTGGACATCACCACGGCGACGCTGGACTTTTTACCCAAAGTCGTCCTCAAGAAGATTTTGACGTCGAGGTACAAGGACGGTCAGCTGGACCTCAGCGCCTTCACCGCGGGGCCCGACATAAAACACTTTATCTACTACCCATTGAATCGCGTCAGCAACCAGACGGAGATATTCCAAATAGAGTCCACGTTCATATGGGAGAACCTCACGCACCTTAACCTCTCACGCAACAGGATCACTTCGCTGGTCGGGTTGAACCTGGCGCAGATGACGCCCCGGCTGCGGCACCTGGACGTGTCGCACAACGCGCTGGGTCGGCTGGGCGCGCTGCTGGCGGGGCGGGCGCTGCCGCTGCGCGCGCTGCTGCTGGAGGGGAACCCGCTGTGCGCCGACTGCACCGACCCCGACCGATACGTGCAGCTCGTCCAAATGATATTCCCTACGCTCGTCACCCTCGACGGGATCCACATCAAGAGGAAAGGGGAAATCCCGAAGTCAGTCCGCAAGACGTACTGTCCGGACGACGCTAAGGAGATAGTGCACGAGTTCGTGCAGGTGTACTTCCCACTGCTGGACTCGGCGCTGGAGCAGCGGGCCCACGTGGCGCAGCTGTACCACCGACACGCGCTCGTGGACATCAGCTACAACCCGGCGCTCAGTGCGTGCGCTCACATACATACGGCTTATTTCATTCATTAA

Protein

MKKRKANSNLIRVTNNIVPIKPKSVPAPAGNKMPIWEPRQPNAEKTHMQAQTSAISNPNIMQMNNIPFSTSLTAPAENNMPVWELQQPNITGVQESPFRLQLNPTPQTTPMLPNFQHPPHEQMQYRPQLPIHIHNDLRSFVPPTLGVQPSPNFESILQQQQLPIIQTIPPTQAMFTQPLPSTSAMQLPQLIPSAQLMQPAQPVLSVPLAPLMPSPHPMPAPLPVPPPQPQAPFPPRQQTSAESHVIASHQNPSARDACVEPPNYAALDTLQETEDSRQSTSRDPPGASLNKRAAPHKRSAAEKQKKQKLTTHLRSENTQRPQQVGKPTTSSEFTPVHLREDVRASTEPVVMRYLMSWPWKNEVRIKASATVRHSKSQMIAEQELMEQQYSDPAQFFQVSVRGHGAARPEPVLDALLASVRGRSLIPCFVQLTEDECKFLVIRCKTALLAIHKYGFVLGGDGARMTVTVSAVDITTATLDFLPKVVLKKILTSRYKDGQLDLSAFTAGPDIKHFIYYPLNRVSNQTEIFQIESTFIWENLTHLNLSRNRITSLVGLNLAQMTPRLRHLDVSHNALGRLGALLAGRALPLRALLLEGNPLCADCTDPDRYVQLVQMIFPTLVTLDGIHIKRKGEIPKSVRKTYCPDDAKEIVHEFVQVYFPLLDSALEQRAHVAQLYHRHALVDISYNPALSACAHIHTAYFIH

Uniprot

H9JGD9

Pubmed

19121390

EMBL

BABH01033566 BABH01033567

Proteomes

UP000005204

PRIDE

H9JGD9

Interpro

IPR032675   LRR_dom_sf        + More
IPR032710   NTF2-like_dom_sf
IPR001611   Leu-rich_rpt
IPR030217   NXF_fam

SUPFAM

SSF54427 SSF54427

Gene 3D

3.80.10.10

ProteinModelPortal

H9JGD9

PDB

4WYK E-value=1.36408e-08, Score=145

KEGG

101739167 K14284 nuclear RNA export factor | (RefSeq) nuclear RNA export factor 1-like

GO

GO:0005515 GO:0005524 GO:0006468 GO:0007169 GO:0016020 GO:0006811 GO:0005622 GO:0006810 GO:0003824

PANTHER

PTHR10662

Length:

702

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03275

Exp number, first 60 AAs:

0.000940000000000001

Total prob of N-in:

0.00171

outside

1 - 702

Pi

6.527487

Theta

15.82967

Tajima's D

-1.049776

CLR

11.55509

CSRT

0.126643667816609

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics