SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11129  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008238
Annotation
Plexin-A4_[Operophtera_brumata]
Location in the cell
PlasmaMembrane   Reliability : 2.503
 

Sequence

CDS
ATGTGGCGCGTGCTGCTGGCGTTAGCGGCCGCGTGCGTCGCCGCGCGCGCCTCCCAAGACGTCGTGCGGACCTACAGCGATCCGGTCTCCGCACCGGGATCCCAGTTCAACCACCTCGTCGTGGATCGCAATACGGGCCGTGTCTACATCGGCGCTGTTAACAGAATCTATCAATTGTCGCCTGATTTGGAAGTAGCCCAATCGATTATTACAGGCCCCGTCAACGATTCCGCTCTCTGCACTTTTGATTGTCCAGCCAACTATGTCAAGAAGCCGACGGATAATGTTAATAAGGCGCTGGTGATCGATTACGCGACAAGCCGACTCATAACGTGCGGCTCCGTGCTTCAAGGGCTATGTTCCGTGCGAAACCTTAATAATATTTCTCATGATGTTCGTGAAGTTCGTGAACCGGTGGTGGCAAACAATGCTACAGCGTCGACGGTTGCGTTTATTGCGCCTGGTCCTCCAAACCCGCCTATGACACAAGTTATGTACGTAGGTGTTACGTTTACGGGAAATTCGCCATATCGTTCAGAAGTTCCTACTGTCAGCAGCCGTTCCCTGGAAGATGACCGCCTGTTTGGAATTGCACGCACCGCAGTCACGACTGGTACGAGGATGTTCATCAATTCATTATCACGGGAGCGATATCTTATAAATTACGTCTACGGCTTTAGCTCCGAGGGATTTAGTTATTTTCTTACAACACAACTGAGAGGTGTAGGATCAGATACATACTACAGCAAATTGGTTCGTGTATGTCATGATGACGAAAACTACTATTCATATACTGAAATTCCAATGTCTTGTACCGGAGAGGGAGGAGGCAATTTTGGATACAATCTAGTACAGGCTGCTTTTGTTGGAAAGGCCGGCTCCGTCCTCGCAGGTGAATTAGGAATAACGGCACAGCACGATGTACTCTTTGCAGCCTTCAGTCAAAGTGAGTCAATAAACGCGAATACTCCATCAGATCTGTCAGCCCTTTGTGTGTACTCTCTGAAAGCGATTCGGCGTAAATTCATGCAGAATATAAAGACATGCTTCAGCGGAAATGGATCTCGGGGTCTTGATTTTATATCGCCCTCGCATACTTGTATCGGAACAAAATTACAATCAATCAGTGAAGATTTTTGTGGCTTAGACGTAAATACTCCACTCGGGGGTGAACAACCAGTGGAAGCGGTCCCGGTAGCTGTATTTAAGAAAAGACTTACTGCAGTAGCCGCAACTGCCACTGGCGATTATACTGTAGTGTTTGCGGGAACGGCGAAAGGACATCTCAAAAAGATTGTGGTCGAAAGTGCAACTTCTGCATTTGAATACGGGGATATCGTTGTTGACGAAGATTCACCAGTGAATAAAGACTTATTCTTCGATACTCAGTTAATGCATTTGTATGTGATGACAGAACGAAAAGTGTCTAAAGTGAAAGTGCAAGAGTGCAGCGTTTACAAATCCTGTTTGACGTGTCTCGGAGCCAAAGACCCGTACTGTGGATGGTGTTCTTTAGAAAACAAATGCAGTCTGCGGTCAGATTGTCAGGAGGCAGCTAAAGATCCTTTGTATTGGATCCCTTACCGCAGCGGGCGTTGTACAACCATCACCCAAGTGACACCTAATCAATTGCAACGAACGACAGCAAGAACACTAGATTTACTCATCGAAAACTTGCCTACACTCAATGGACAATTTTTATGTGCATTTACAGCTTTAGATCGTACTCTTATAACGAACGCTACCAGAAAAACTTACGGTGTTAATTGTACAACTCCGCGTACCGATACGCTCCCACCGATACCGGCTGGTCAACATCACTTCACTGCTAAGTTATCGGTGCGCACTACTCAGGGACCTGACTTTGTAGCGACCAATTTTACATTCTTTGATTGTAATACGTACAGCTCGTGCACACAATGCGTCAGTTCCTCGTTCCCTTGCGACTGGTGTGTCGACGGTCACCGCTGCACCCACGATACCGCTGAAAATTGCCGTAATGATATTTTAGTAACGGGAGTTAGTAGAATAGGCCCAAGTTATCGTTCTGGTCCAAGCTTTTGTCCAACAATAAATTCAACGTCCGACGGTACCAACGAAATATTAGTACCTTCCGGTGTTAAAAAACAAATCAAAGTTAAAGTCCACATAATAGGCCAATTTATCGTTCAAACTAGATTCGTTTGTCAATTCAATATTGAGGGTAGAGTCACTCACGTGAACGCTCAACTTTTAGCAGATACCATATATTGTGAATCCGTTGAATTTACTTATACTTCCCGAGCTCCTAATATTACTGCTTCGTTTGCTGTAATATGGGGTGGGTCGAAACCTCTTGATAACCCGGATAATACTCATATTCTCATCTACCGTTGTAACGATATGGCTGATAATTGCGGCATGTGTCTCGCCCTCCCTGAGAAGTTTGGTTGTGGTTGGTGTCAAGGGTCCGACAGGTGCGAAGTACAAGAACAGTGCGGAGCACCTAGTGTTTGGTTAAATCGAACACAAACTTGCCCTAATCCTGAAATTCATTCATTCAGACCACAGCTTGGCCCATGGGATGGTGGAACAAACATAACCATCGAAGGTATAAACCTGGGTCGGAATATATCTGACATATATAACGGGGTAACTATTGCCGGAATAAAATGTCAGCCTATCATAGAATTATACATAAAAACAAAACAAATCGTTTGTACTGTAGACGGTCCCGGAGAAGAGGTTCCCCGTGATGGGCCAGTAGTTGTTCGTGTTGCTGATTATCGCGATGAATCTAAACAACACTACGCGTTCGTTAACCCTAAAATTAATTCTATCGAACCAATCTACGGGCCACAATCGGGCGGTACGAAGTTACGTATCACGGGTGAATATCTAAACGCCGGCAGCAATATACAAGCTTATATCGATGATTTGCCTTGTGCTATTTTATCAGTATCGCACGAGGAAGCTGTGTGTAGGACAAGCCATTCGTATCAACTCAAAATGGGCACACTGCGAATGCGTTTCGATAACGGGATGCGAACTCTAGAACGACAAAAGTTTGAATACATAGAGGATCCTGTTGTAGTGTCCGTTGAATCCGGTCCACCATTATTATCGCAACGCAAACAACCCAAAGGCATTCCGTCCGGCGGGATAAGCATCAAAGTGATGGGCAGAAATTTCCATTCAATTCTATTGCCCCAGATCTATGTATATCACGATAACAGACCTTACATTGCTCCTTGCTATAGGGCAGATTTTCAAACTGTTCTGATTTGTGAATCACCCGGTATTGAAAGTGCTGGTCTCAATCTAGATCCTGATAGACCTTTGGCATTAGAATACGGTTTCAATATGGACGACGTACAAAGTGTACAGAACCTCACAACTAAGACTGGTGACGCGTTCCTTTTATATCCTGATCCCATTTATGAGAAATTCGGCGAAGATTTAAAGTATTACAAGTCTGATTATTTAACTATTAACGGTCAAAATCTGGATAGGGCGTGCACTGAGGCTGATGTAGAAGTTCGAATCGGAGACAGCATTTGCAACGTAACATCGTTGTCACGGCATCAACTGACTTGTCGTCCCCCTTCGCGGGAAGATCTTCCTGACGGTGTTGACACTCTTGAAGTAGTAGTTAAAGTAGGACGTGCTCTCACCTACAAGATTGGTAAATTGTCGTATTCCTCGCAGACTGGTTTGCAAGCCGCTATAGGCAAACCAGCACTGATAGGGGTCGGCATCAGTATAGGTATTCTCTTATTTATAGTTGTGGGATTCTTAGTTATGTATAGGCGAAAGTCAACAGAAAATATTAGGGTATTAAAGAGTATGCAGGAACAGATGGATATTTTAGAGTTAAGAGTAGCAGCAGAATGTAAGGAAGCGTTTGCGGAGTTGCAAACCGAAATGACGGATTTGACTGGTGATGTCACGGGCGGTATTCCTTTCCTAGATTATCGCACGTATGCCATGAAAATTTTGTTCCCTAACATTGACGACCATGCCGTCTTGCAGTGGGAACGTCCCGAGCTTATTAGAAAAGACAAGGGTCTTAGATTGTTTGGACAGCTTATTATGAATAAAACATTCCTTTTATTATTTATTCGTACTTTAGAAAGCAATAGATATTTTTCGATGCGTGATCGTGTGAATGTAGCTTCATTGATTATGGTAACACTCCAAAGTAAAATGGAGTACTGCACTGATGTATTGAAGACATTATTAGCTGATTTAATAGAGAAGTGCATGGAAGGTAAAAATCATCCTAAATTACTGCTCAGACGTACCGAAAGTGTAGCGGAAAAGATGTTGAGCGCTTGGTTCACTTTTCTGCTTTACAAATTTCTCCGCGAATGCGCCGGGGAACCTCTGTATCTGTTATTTAGGTCGATGAAAGGACAGGTAGATAAAGGCCCCGTCGATGCCATTACCTCTGAAGCCCGTTATTCACTTAGCGAAGAAAAACTTATCCGCCAATCAATAGACTTTAAAGCAATGACCGTAAACGTGTCGATTTCGCAACAAACTTTGTTTGTGAGCGGCTTAGAGGCTACCACTGAAAACGTACAAGTTAAAGTTTTAGACTGTGATACGATAAGTCAAGTTAAAGAGAAATGTTTGGATGCTATATATCGCTCAACTCCGTATTCCCAACGTCCTAGTCGAGATGAACTTGATTTAGAATGGCGCACGGGGGCTTGTGGTAGGTTGATTCTTTACGACGAAGATAGTACTACGAAGTGTGAAGGAGAATGGCGTAAACTCAATACCCTGAATCATTACCGCGTCCCGGATGGCGCTTGCCTTAGTCTTGTTGCAAAACAGAGTTCGGTTTATAATTTGTCTAATATGGAGAAAAATGACAAGTCTCATACTTACGAAACTTTAAATCGAGGCAAATACGGATCCGCTAGTCCCCCTGCAAGCCCACTGAAATACGATCACGGTGGCGGCTTTAAATACTGGCATCTCGTGAGACATCACGACGATGACGCACGCAAGGAGGGTGAGCGTGGCAATAAAATGGTCTCTGAGATTTATCTCACACGTCTTCTCGCCACGAAAGGCACTCTGCAGAAATTTGTCGATGATTTATTTGAGACCATTTTCAGTACAGCTCATCGCGGTTCGGCGTTGCCTCTGGCCATAAAGTATATGTTCGATTTCCTCGATGATCAGGCATTACAGCACGCAATATCCGACCCCGAAGTTGTGCATACTTGGAAAAGCAATTCCCTTCCTCTTCGCTTCTGGGTGAACCTGATAAAAAATCCTAATTTCGTGTTCGATGTTCATAAGTCAAATACTGTAGATTCTTGCTTATCTGTTATCGCGCAAACTTTCATGGACTCTTGCTCGACCTCCGATCACATTTTAGGCAAAGACTCGCCTTCGTCCAAGCTTCTTTACGCTAAAGACATTCCCGTGTACAAGGAGTGGGTGGAACGTTACTATGCGGACATTAAGTTGATGCCGGCAATATCAGATCAGGACATGAACGCGATGTTTGCGGAGGAGTCTCGCCTCCACACGAAAGAGTTCAACACGAACTGTGCGCTGAACGAGCTGTACGCGTACGCGGACAGGTACAACGAACAGTTGACGGTAACGCTCGAGGAGGACGAGTTCTCGCAGAAGCAGCGGCTCGCATACCGCCTCGAGCAGGTGCACAGCCTCATGGCTCATGATTACAACGTGTGA
Protein
MWRVLLALAAACVAARASQDVVRTYSDPVSAPGSQFNHLVVDRNTGRVYIGAVNRIYQLSPDLEVAQSIITGPVNDSALCTFDCPANYVKKPTDNVNKALVIDYATSRLITCGSVLQGLCSVRNLNNISHDVREVREPVVANNATASTVAFIAPGPPNPPMTQVMYVGVTFTGNSPYRSEVPTVSSRSLEDDRLFGIARTAVTTGTRMFINSLSRERYLINYVYGFSSEGFSYFLTTQLRGVGSDTYYSKLVRVCHDDENYYSYTEIPMSCTGEGGGNFGYNLVQAAFVGKAGSVLAGELGITAQHDVLFAAFSQSESINANTPSDLSALCVYSLKAIRRKFMQNIKTCFSGNGSRGLDFISPSHTCIGTKLQSISEDFCGLDVNTPLGGEQPVEAVPVAVFKKRLTAVAATATGDYTVVFAGTAKGHLKKIVVESATSAFEYGDIVVDEDSPVNKDLFFDTQLMHLYVMTERKVSKVKVQECSVYKSCLTCLGAKDPYCGWCSLENKCSLRSDCQEAAKDPLYWIPYRSGRCTTITQVTPNQLQRTTARTLDLLIENLPTLNGQFLCAFTALDRTLITNATRKTYGVNCTTPRTDTLPPIPAGQHHFTAKLSVRTTQGPDFVATNFTFFDCNTYSSCTQCVSSSFPCDWCVDGHRCTHDTAENCRNDILVTGVSRIGPSYRSGPSFCPTINSTSDGTNEILVPSGVKKQIKVKVHIIGQFIVQTRFVCQFNIEGRVTHVNAQLLADTIYCESVEFTYTSRAPNITASFAVIWGGSKPLDNPDNTHILIYRCNDMADNCGMCLALPEKFGCGWCQGSDRCEVQEQCGAPSVWLNRTQTCPNPEIHSFRPQLGPWDGGTNITIEGINLGRNISDIYNGVTIAGIKCQPIIELYIKTKQIVCTVDGPGEEVPRDGPVVVRVADYRDESKQHYAFVNPKINSIEPIYGPQSGGTKLRITGEYLNAGSNIQAYIDDLPCAILSVSHEEAVCRTSHSYQLKMGTLRMRFDNGMRTLERQKFEYIEDPVVVSVESGPPLLSQRKQPKGIPSGGISIKVMGRNFHSILLPQIYVYHDNRPYIAPCYRADFQTVLICESPGIESAGLNLDPDRPLALEYGFNMDDVQSVQNLTTKTGDAFLLYPDPIYEKFGEDLKYYKSDYLTINGQNLDRACTEADVEVRIGDSICNVTSLSRHQLTCRPPSREDLPDGVDTLEVVVKVGRALTYKIGKLSYSSQTGLQAAIGKPALIGVGISIGILLFIVVGFLVMYRRKSTENIRVLKSMQEQMDILELRVAAECKEAFAELQTEMTDLTGDVTGGIPFLDYRTYAMKILFPNIDDHAVLQWERPELIRKDKGLRLFGQLIMNKTFLLLFIRTLESNRYFSMRDRVNVASLIMVTLQSKMEYCTDVLKTLLADLIEKCMEGKNHPKLLLRRTESVAEKMLSAWFTFLLYKFLRECAGEPLYLLFRSMKGQVDKGPVDAITSEARYSLSEEKLIRQSIDFKAMTVNVSISQQTLFVSGLEATTENVQVKVLDCDTISQVKEKCLDAIYRSTPYSQRPSRDELDLEWRTGACGRLILYDEDSTTKCEGEWRKLNTLNHYRVPDGACLSLVAKQSSVYNLSNMEKNDKSHTYETLNRGKYGSASPPASPLKYDHGGGFKYWHLVRHHDDDARKEGERGNKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSALPLAIKYMFDFLDDQALQHAISDPEVVHTWKSNSLPLRFWVNLIKNPNFVFDVHKSNTVDSCLSVIAQTFMDSCSTSDHILGKDSPSSKLLYAKDIPVYKEWVERYYADIKLMPAISDQDMNAMFAEESRLHTKEFNTNCALNELYAYADRYNEQLTVTLEEDEFSQKQRLAYRLEQVHSLMAHDYNV

Summary

EMBL
BABH01038331    GDQN01005376    JAT85678.1    ODYU01010027    SOQ54840.1    NWSH01002687    + More
PCG67684.1    AGBW02009093    OWR51703.1    JTDY01001245    KOB74417.1    RSAL01000124    RVE46604.1    KQ460154    KPJ17271.1    KQ458880    KPJ04623.1    GEZM01087469    JAV58669.1    KK852819    KDR15610.1    KQ971307    EFA11552.1    GECZ01031976    JAS37793.1    GECU01035365    GECU01007742    JAS72341.1    JAS99964.1    QOIP01000002    RLU25962.1    GEDC01021652    JAS15646.1    GFTR01008906    JAW07520.1    GDHC01002634    JAQ15995.1    ACPB03006387    ACPB03006388    ACPB03006389    ACPB03006390    ACPB03006391    ACPB03006392    GBYB01009006    JAG78773.1    DS235022    EEB10621.1    AJWK01009369    GGMS01013020    MBY82223.1    GGMR01002465    MBY15084.1    ABLF02030752    GFXV01004073    MBW15878.1    CH933813    EDW10926.2    KRG07293.1    CP012527    ALC48084.1    CM000831    CH940665    ACY70534.1    EDW71090.2    KRF85333.1    CH916380    EDV90907.1    GDIP01029542    JAM74173.1    GDIQ01073376    JAN21361.1    GDIQ01268430    GDIQ01078474    GDIQ01064787    JAN29950.1    UFQS01000844    UFQT01000844    SSX07239.1    SSX27582.1    GDIQ01092468    JAL59258.1    GDIQ01056588    JAN38149.1    CH902659    EDV33932.2    KPU74854.1    CH964272    EDW83580.1    GDIQ01205530    JAK46195.1    GL732544    EFX81191.1    GDIQ01231971    JAK19754.1    GDIQ01155801    JAK95924.1    GDIQ01220680    JAK31045.1    AE014135    AAF59394.1    GDIQ01175641    JAK76084.1    CM000161    EDW99343.1    KRK04984.1    KRK04986.1    KRK04987.1    CH954184    EDV45216.1    GDIQ01016396    JAN78341.1    GDIQ01251968    JAJ99756.1    JRES01000411    KNC31483.1    AF106932    AAD09425.1    CCAG010016223    GDIP01113918    JAL89796.1    KRF85332.1    OUUW01000017    SPP88949.1    GDHF01030966    GDHF01022027    GDHF01011667    JAI21348.1    JAI30287.1    JAI40647.1    GDIP01090022    JAM13693.1    GBXI01010905    JAD03387.1    GAKP01020725    GAKP01020724    JAC38228.1    CH479285    EDW25269.1    KRF99821.1    AFH06788.1    KQS21463.1    GAMC01009332    JAB97223.1    KRK04985.1    GDIP01064976    JAM38739.1    KA648835    AFP63464.1    GBXI01017289    JAC97002.1    GDIQ01187885    JAK63840.1    GDIQ01136108    JAL15618.1    GDIQ01192783    JAK58942.1    GFDL01001010    JAV34035.1    HACA01024257    CDW41618.1    GGFL01014694    MBW78872.1    GGFL01004444    MBW68622.1    CH477239    EAT46462.1    GGFK01001539    MBW34860.1    GGFM01001046    MBW21797.1    GGFJ01000169    MBW49310.1    GGFJ01000153    MBW49294.1    AAAB01008846    EAA06230.3    AXCN02001219    ATLV01025123    KE525369    KFB52215.1    AXCM01012335    GDHF01016163    GDHF01002749    JAI36151.1    JAI49565.1   
Pfam
PF01403   Sema        + More
PF01437   PSI
PF01833   TIG
PF17960   TIG_plexin
PF08337   Plexin_cytopl
PF18020   TIG_2
PF16076   Acyltransf_C
PF01553   Acyltransferase
Interpro
IPR002165   Plexin_repeat        + More
IPR014756   Ig_E-set       
IPR002909   IPT_dom       
IPR031148   Plexin       
IPR041362   TIG2_plexin       
IPR001627   Semap_dom       
IPR013783   Ig-like_fold       
IPR013548   Plexin_cytoplasmic_RasGAP_dom       
IPR008936   Rho_GTPase_activation_prot       
IPR016201   PSI       
IPR041019   TIG1_plexin       
IPR036352   Semap_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR031146   Invert_Plexin-B       
IPR032098   Acyltransf_C       
IPR002123   Plipid/glycerol_acylTrfase       
SUPFAM
SSF101912   SSF101912        + More
SSF48350   SSF48350       
SSF81296   SSF81296       
Gene 3D
PDB
6FKN     E-value=0,     Score=2331

Ontologies

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.992613
 
 
Length:
1898
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.5627500000001
Exp number, first 60 AAs:
0.00519
Total prob of N-in:
0.00256
outside
1  -  1239
TMhelix
1240  -  1262
inside
1263  -  1348
TMhelix
1349  -  1371
outside
1372  -  1898
 
 

Population Genetic Test Statistics

Pi
3.297467
Theta
210.972367
Tajima's D
-0.97942
CLR
133.516019
CSRT
0.140342982850857
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
24402669 INRGPTNSGAGSWNPK 100.00 1e-04
28467696 INSGMEIEYQK 100.00 1e-04
24402669 QITINDIPVGR 100.00 3e-04
26280517 FFQGADER 100.00 0.004
24402669 FFYVDVR 100.00 0.004
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