SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11126
Pre Gene Modal
BGIBMGA008237
Annotation
PREDICTED:_RUN_domain-containing_protein_1_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 4.567
 

Sequence

CDS
ATGGAATCAAACAGCGACAATGAAAACGAAATTCCGATTTGGCAAGAACCAAGGTGTGAACCACTCGGCGCACCAAAAGAAATTTGCGATGAAAATGAATCTGAACAGAATTCAGGCGACAGATTACATGCTTTGGAAGAAGAGCAGGAGATATTATCATCCTCTGTGTTCTCCTTGACGTCTCATTTGGCACAAGTTGAGTTTCGTTTGCGACAAATTTTGAAAGCTCCTCCAGAAGAGAAAGACGCTATGCTGAAGGCTCTCGAAGAGTTCACTTCGCGTGGAGTGTCTGATACAAGAGCAGCTCCGCAAGGAAGCTCCGGTGAAGGAGCTTGTAGCGAGTGCCTCCAATTAGAACGAAAGATAAGGCGGCAACGCTCCAAGCAGACACATTTTATTGAAAGATTAAAATCACAACTGATAGAACTGGAAAGGTTCGCTGCAAATCCCGCGACTTTGAACGACGGTAAGCACAGAAATTTTATTGAACATTTAAAAAGCGAAATAGATCAAAGTCTTGAAGAAGGATGTCCATTGAGTGCTGATGAACTAAGACATCAGATCAATTGTGCTGTTCGCCAGTATGCCGACCGGCAGTTATCAAAAGATGAAATCATAACCAAACTCCAGGCTCACATAGAGGACATGCAGAAGTTTATAAAATTGATGAAAAATGAACAAACTCAAGAAAAATCTAAAACGGACCCTAAAAATGTAAAATCTGAGAGATTTGAGAAGACATTCAATAGAAATAAAAATAATGATGACCTAAGAACTGAAACCATAAACTTAATGAGAAAAGCTTCTACATTAATACAGATATTTACAGTTTCCCAGTTTGGATGTTCACCAAACACAGATAGGAGATATGAAAGAAAGTCCTCTACTATTGTCACCCATTGGGGTAATTTAAGAGCAAAGCTAGAGATGTCCATAGATGCAGTATTGCACTTAGTTTCTAGAGAGAGACCATCCCACATTATGATTGATAGTTATGACAGTGACTCTGATGAAGGAGGAATGATTATAAATGATGCACCCCTAACAACAGCTGTACGGCGACACTTAGCCATCAATCTTCGGGACTTACTACAACATGGGCTAGTGGGTCCAGAGTCGAATTCTTTAGTACCTCTAATAGGATGCTTTCCTGTACGCAGATCCTCATCCTCTCGTTGTTTGCATATATGGGATTTAATTCTTCGCTATTATGAGTTCAATGACGGTGACCACTTCAACTCCACTCCGGCTAGGAAGTTAAGTCAAAGTTTTAACTTGGATATTGTTGGAGGCAGTGCTATAACAAGTAAACAGAGTTTATTAAGTGCAATTGGAAGTATATTGGCATCACATGCTCCTTATAAAAGAAGTTATGATGCCCATTTCAAAGCCTTTGTCTGTGCAGCTTTGAATAAACATAAACTAGTTACTTGGCTGAACATAATGTTAAAATGCCGGTCTCTTGTTGATTCGTATTATTCATCAACAAGTTACATTGTAAATACTGGCTTCCAAGATGCCTTGCAAAGTCTGGATCGTTTGACTCCATACAATTTTGATTTGCCAGTAGATCTGGCTGTCAAGCAGTTTCAGAATATCAAAGATGTATTTATGTAA
Protein
MESNSDNENEIPIWQEPRCEPLGAPKEICDENESEQNSGDRLHALEEEQEILSSSVFSLTSHLAQVEFRLRQILKAPPEEKDAMLKALEEFTSRGVSDTRAAPQGSSGEGACSECLQLERKIRRQRSKQTHFIERLKSQLIELERFAANPATLNDGKHRNFIEHLKSEIDQSLEEGCPLSADELRHQINCAVRQYADRQLSKDEIITKLQAHIEDMQKFIKLMKNEQTQEKSKTDPKNVKSERFEKTFNRNKNNDDLRTETINLMRKASTLIQIFTVSQFGCSPNTDRRYERKSSTIVTHWGNLRAKLEMSIDAVLHLVSRERPSHIMIDSYDSDSDEGGMIINDAPLTTAVRRHLAINLRDLLQHGLVGPESNSLVPLIGCFPVRRSSSSRCLHIWDLILRYYEFNDGDHFNSTPARKLSQSFNLDIVGGSAITSKQSLLSAIGSILASHAPYKRSYDAHFKAFVCAALNKHKLVTWLNIMLKCRSLVDSYYSSTSYIVNTGFQDALQSLDRLTPYNFDLPVDLAVKQFQNIKDVFM

Summary

EMBL
BABH01038326    JTDY01009131    KOB64069.1    ODYU01010153    SOQ55071.1    NWSH01002687    + More
PCG67683.1    GDQN01009034    JAT82020.1    KQ460154    KPJ17274.1    KQ458880    KPJ04625.1    AGBW02009093    OWR51701.1    NEVH01013202    PNF29920.1    KZ288215    PBC32704.1    KK853224    KDR09703.1    KQ414735    KOC62154.1    KQ971307    EFA12041.2    JH431730    GGLE01006050    MBY10176.1    KQ434819    KZC06911.1    GL445398    EFN89658.1    KQ977890    KYM98992.1    GL438386    EFN69050.1    GL768105    EFZ12234.1    GECZ01029607    JAS40162.1    KK107238    EZA54771.1    GBYB01008572    JAG78339.1    GBYB01008564    JAG78331.1    GANP01004384    JAB80084.1    ADTU01020308    KQ981960    KYN31915.1    KQ421821    KOF76309.1    GEDC01026333    GEDC01013853    JAS10965.1    JAS23445.1    LJIG01016000    KRT81915.1    GL888455    EGI60685.1    GEBQ01005541    JAT34436.1    KQ435800    KOX73287.1    KQ983145    KYQ47062.1    KQ980039    KYN18125.1    KB201304    ESO97682.1    GBBI01003263    JAC15449.1    GFTR01006748    JAW09678.1    GBHO01040836    GBHO01037100    GBRD01009437    GDHC01021271    GDHC01007647    JAG02768.1    JAG06504.1    JAG56387.1    JAP97357.1    JAQ10982.1    APGK01039114    KB740967    KB632399    ENN76831.1    ERL94680.1    UFQS01003611    UFQT01003611    SSX15797.1    SSX35144.1    GEZM01053010    GEZM01053009    JAV74225.1    NNAY01000707    OXU26871.1    GFPF01011558    MAA22704.1    GFAC01004159    JAT95029.1    KK854027    PTY09722.1    GEFH01000787    JAP67794.1    GEDV01006233    JAP82324.1    GBBM01000747    JAC34671.1    QOIP01000007    RLU21086.1    ACPB03014367    ABJB010086659    ABJB010189896    DS622547    EEC00804.1    LNIX01000020    OXA44061.1    JH816359    EKC30909.1    AJWK01028174    KK118537    KFM73221.1    GDRN01090164    JAI60514.1    PZQS01000003    PVD33248.1    DS235290    EEB14463.1    AMQN01012797    KB309758    ELT93405.1    MNPL01007467    OQR74749.1    PYGN01000354    PSN47882.1    NEDP02002194    OWF51613.1    GFXV01008174    MBW19979.1    ABLF02036832    GFWV01004928    MAA29658.1    AMQM01004494    KB096590    ESO03552.1    AHAT01023053    AERX01008422    GBYB01008568    JAG78335.1    HADW01010591    SBP11991.1    KQ042252    KKF17042.1    HAEG01006176    SBR76044.1    HAEH01009278    SBR86736.1    REGN01011671    RMZ97039.1    HAEI01013809    SBS16278.1   
Pfam
PF02759   RUN
Interpro
IPR037213   Run_dom_sf        + More
IPR004012   Run_dom       
SUPFAM
SSF140741   SSF140741       

Ontologies

Topology

Length:
538
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02212
Exp number, first 60 AAs:
0.00029
Total prob of N-in:
0.00287
outside
1  -  538
 
 

Population Genetic Test Statistics

Pi
185.727792
Theta
213.301904
Tajima's D
-0.476433
CLR
0.645318
CSRT
0.250737463126844
Interpretation
Uncertain
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