Gene

KWMTBOMO11121

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr18(-):13569333-13571100      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.517

CDS

ATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGTGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAATCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTTAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCCAGTAGAAACAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTCTTTCATAGGGGAAGCTCCACACGGATTTCCTCCCGTATTAGGAGGAGGAATCTCACACCCCCGATTACTCTCTTTAGTCAATCCATACCCTGGGCCAGGAAGGTCAAGTACCTGGGCGTTACCCTGGATGCATCGATGACATTCCGCCCGCATATAAAATCAGTCCGTGACCGTGCCGCGTTTATTCTCGGTAGACTCTACCCCATGATTTGTAAGCGGAGTAAAATGTCCCTTCGGAACAAGGTGACACTTTACAAAACTTGCATAAGGCCCGTCATGACTTACGCGAGTGTGGTGTTCGCTCACGCGGCCCGCACGCACATAGACACCCTTCAATCTCTACAATCCCGCTTTTGCAGGTTAGCCGTCGGAGCTCCGTGGTTCGTGAGGAACGTTGACCTACACGACGACCTGGGCCTCGAATCTATACAGAAATACATGAAGTCAGCGTCGGAACGGTACTTCGATAAGGCTATGCGTCATGATAATCGCCTTATCGTAGCCGCCGCTGACTACTCCCCGAATCCTGATCATGCAGGAGCCAGTCACCGTCGACGCCCTAGACACGTCCTTACGGATCCATCAGATCCAATAACCTTCGCACTAGACGCCTTCAGCTCTAGGAGCAGGCTTAGGGACCTCGGTAACCGTACTCGTCGAACTCGACAAAGAGTTCGCCGTGCAACCTAA

Protein

MANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTAGIPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLFHRGSSTRISSRIRRRNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITFALDAFSSRSRLRDLGNRTRRTRQRVRRAT

Uniprot

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   O96544   A0A194Q1H8   V5GNF3   A0A1Y1NA23   V5GNJ2   A0A2S2PR14   A0A139WA11   V5I850   X1WXU3   X1WMU5   A0A2S2Q823   A0A139W8G9   X1WLB2   J9KKL3   X1WWC4   A0A087U2S8   A0A087T1W0   A0A1Y1M7E9   A0A2S2PH29   X1X928   X1WL89   J9KC83   A0A224XF24   O76197   A0A023EZE6   A0A2S2PPK8   A0A2S2PX53   J9KCZ4   A0A023EYS8   A0A2S2N814   A0A2J7R8R8   A0A3N5Z7I3   A0A2J7RIW7   A0A2J7QUJ9   A0A2J7R4B7   A0A2J7Q059   A0A2J7R7D0   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP6   A0A2J7RB54   A0A2J7PDM0   A0A1Y1LKN6   A0A2J7RPU2   A0A2J7RL12   A0A2S2NGV8   A0A2J7QQP1   A0A2J7PU96   X1WNI2   A0A2J7PMP9   A0A2J7RS81   A0A2S2QTZ8   A0A2A4K8E7   A0A2J7RS77   A0A2S2QJM7   A0A2J7QEZ4   A0A2J7QFL0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7R2E1   A0A2J7PVX3   A0A2J7Q5G9   A0A2J7RKP3   A0A2J7RRU8   A0A2J7QR37   A0A0A9YJ00   A0A2J7Q627   A0A087V0P8   A0A2J7Q6J2   A0A2M4BDV6   A0A2J7Q1Y9   A0A2H8TWD9   A0A0A9Z4E6   A0A2S2NJB5   Q07995   A0A2J7QY69   A0A2J7PBY3   A0A2J7QB68   A0A069DZC5   A0A0J7K4E0   A0A2S2RAN7   X1WZH0   A0A2J7PDS9   A0A0L0CBP5   A0A2M4BD67   A0A069DW01   X1WN18   A0A0J7MYU2   A0A2A4K918   A0A2S2QEE0   A0A0A9YU04   A0A352X8G4   A0A146LCK7  

Pubmed

10333566    23652563    26354079    10380107    28004739    18362917    + More
19820115    8934517    25474469    30086797    25401762    8387152    26334808    26108605    30148503    26823975   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KC165845    AFY12622.1    KQ459259    KPJ02068.1    KQ459265    KPJ02064.1    AF081103    AAC72921.1    AF081101    AAC72919.1    KQ459580    KPI99178.1    GALX01005359    JAB63107.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GGMR01019198    MBY31817.1    KQ971729    KYB24751.1    GALX01005300    JAB63166.1    ABLF02008933    ABLF02014862    ABLF02014866    ABLF02061908    GGMS01004685    MBY73888.1    KQ973342    KXZ75569.1    ABLF02042518    ABLF02057746    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02003961    ABLF02059872    KK117880    KFM71667.1    KK113014    KFM59099.1    GEZM01038405    JAV81653.1    GGMR01016114    MBY28733.1    ABLF02066620    ABLF02019349    ABLF02041900    ABLF02033757    GFTR01008038    JAW08388.1    AF012049    AAC24972.1    GBBI01004571    JAC14141.1    GGMR01018716    MBY31335.1    GGMS01000737    MBY69940.1    ABLF02008463    GBBI01004395    JAC14317.1    GGMR01000676    MBY13295.1    NEVH01006721    PNF37225.1    RPOV01000134    RPJ78669.1    NEVH01003017    PNF40781.1    NEVH01010546    PNF32261.1    NEVH01007443    PNF35684.1    NEVH01020071    PNF21969.1    NEVH01006736    PNF36716.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01005938    PNF38077.1    NEVH01026386    PNF14434.1    GEZM01053022    JAV74219.1    NEVH01001355    PNF42855.1    NEVH01002704    PNF41489.1    GGMR01003407    MBY16026.1    NEVH01012084    PNF30905.1    NEVH01021205    PNF19912.1    ABLF02008153    ABLF02008462    ABLF02008464    NEVH01023961    PNF17613.1    NEVH01000269    PNF43694.1    GGMS01012005    MBY81208.1    NWSH01000032    PCG80497.1    NEVH01000280    PNF43672.1    GGMS01008766    MBY77969.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01014858    PNF27387.1    NEVH01019964    PNF22161.1    NEVH01006754    PNF36554.1    NEVH01007838    PNF34986.1    NEVH01020940    PNF20481.1    NEVH01017559    PNF23833.1    NEVH01002716    PNF41415.1    NEVH01000598    PNF43535.1    NEVH01011985    PNF31054.1    GBHO01010547    GBHO01010546    JAG33057.1    JAG33058.1    NEVH01017542    PNF24034.1    KL813758    KFM83187.1    NEVH01017470    PNF24199.1    GGFJ01001857    MBW50998.1    NEVH01019376    PNF22596.1    GFXV01006424    MBW18229.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GGMR01004661    MBY17280.1    S59870    AAB26437.2    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01016302    PNF25823.1    GBGD01000880    JAC88009.1    LBMM01014395    KMQ85192.1    GGMS01017914    MBY87117.1    ABLF02034467    NEVH01026154    PNF14491.1    JRES01000644    KNC29657.1    GGFJ01001858    MBW50999.1    GBGD01000799    JAC88090.1    ABLF02021177    ABLF02027367    ABLF02066338    LBMM01013518    KMQ85605.1    PCG80496.1    GGMS01006359    MBY75562.1    GBHO01021814    GBHO01010549    JAG21790.1    JAG33055.1    DNOY01000259    HBE18313.1    GDHC01014349    JAQ04280.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000054359    UP000235965    UP000218220    + More
UP000036403    UP000037069   

PRIDE

Q93137    Q9XXW0    Q9BPQ0    K9N5J5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF03372   Exo_endo_phos
PF07530   PRE_C2HC
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR018289   MULE_transposase_dom       
IPR036875   Znf_CCHC_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   K9N5J5   A0A0N0PA09   A0A0N1PFV1   + More
O96546   O96544   A0A194Q1H8   V5GNF3   A0A1Y1NA23   V5GNJ2   A0A2S2PR14   A0A139WA11   V5I850   X1WXU3   X1WMU5   A0A2S2Q823   A0A139W8G9   X1WLB2   J9KKL3   X1WWC4   A0A087U2S8   A0A087T1W0   A0A1Y1M7E9   A0A2S2PH29   X1X928   X1WL89   J9KC83   A0A224XF24   O76197   A0A023EZE6   A0A2S2PPK8   A0A2S2PX53   J9KCZ4   A0A023EYS8   A0A2S2N814   A0A2J7R8R8   A0A3N5Z7I3   A0A2J7RIW7   A0A2J7QUJ9   A0A2J7R4B7   A0A2J7Q059   A0A2J7R7D0   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP6   A0A2J7RB54   A0A2J7PDM0   A0A1Y1LKN6   A0A2J7RPU2   A0A2J7RL12   A0A2S2NGV8   A0A2J7QQP1   A0A2J7PU96   X1WNI2   A0A2J7PMP9   A0A2J7RS81   A0A2S2QTZ8   A0A2A4K8E7   A0A2J7RS77   A0A2S2QJM7   A0A2J7QEZ4   A0A2J7QFL0   A0A2J7Q0Q6   A0A2J7R6U1   A0A2J7R2E1   A0A2J7PVX3   A0A2J7Q5G9   A0A2J7RKP3   A0A2J7RRU8   A0A2J7QR37   A0A0A9YJ00   A0A2J7Q627   A0A087V0P8   A0A2J7Q6J2   A0A2M4BDV6   A0A2J7Q1Y9   A0A2H8TWD9   A0A0A9Z4E6   A0A2S2NJB5   Q07995   A0A2J7QY69   A0A2J7PBY3   A0A2J7QB68   A0A069DZC5   A0A0J7K4E0   A0A2S2RAN7   X1WZH0   A0A2J7PDS9   A0A0L0CBP5   A0A2M4BD67   A0A069DW01   X1WN18   A0A0J7MYU2   A0A2A4K918   A0A2S2QEE0   A0A0A9YU04   A0A352X8G4   A0A146LCK7  

KEGG

105842121    no KO assigned | (RefSeq) uncharacterized LOC105842121

GO

GO:0003964   GO:0004519   GO:0016021   GO:0008270   GO:0003676  

Length:

466

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.511130000000001

Exp number, first 60 AAs:

0.00381

Total prob of N-in:

0.02194

outside

1  -  466

 

 

Pi

80.213087

Theta

43.930567

Tajima's D

2.663177

CLR

0.327406

CSRT

0.95865206739663

Interpretation

Uncertain