Gene

KWMTBOMO11113

Pre Gene Modal

BGIBMGA008224

Annotation

PREDICTED:_echinoderm_microtubule-associated_protein-like_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):13198610-13290525      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.8

CDS

ATGCTAGAAGGCGAAGGGGCGGGTCTAGCAGCTCGCGTGGCCGAGCTTGAGGTCCGCTGCGCCAGACAGGCTGAAGAACTACTCTGCCTACGGTCCACCCTCGCTGATGCTCTGAGGAGACTCAACGCTTTAGAAGGCAGAGCTCCACCACCCTCCACGGGTACACAGAGAAACGGAACGTATACAGGATCATCAGGAACACCAACAAGAGAACTCCGGATAAGACAACCGACGTATCGTGAGACAGCTAAAAGGACTTCCAGTTATGGGTCCTCCACGTCCTCGTTGCCCCAAAGACGTGGTCCACAACACCAATCGACGGGCTCTCTGCAGTCAGACTCGCCGGCGTCTTCGTCATCCCTCTCACCGGCACCCTCGCCCTCACCACGCGCCACGCCTGCACCACTCCACGTACCACACGCATCACAACCATACAGATCCCGAAACAACTCGACCTCGAGCAAGGAGAGCGTGTCTCCGGGCGTGAACCTCACGAAACGCTGGAGCTCCACAGGGGATTTCAACGCGCAAGGCCTCATCGCAAACAGCAGATTCACGACAAAGTCGTTGCTAAACTTGTATTCTAAGCCAACACAGAATGGAGCTATTTTGAAACACGGCACCCACACATGCCAGTACAATGAAGAAGACGGTACAATGAGGATGTACCTCCGCGGAAGGCCAGTTGTCCTACACGGGCCCAGTGACCAAGACGGCTTGGACCCTGCGAAGGTCGCGCCCCCACCGCAAAACAAGCTCAAACTTGAATGGGTGTACGGATATAGAGGCAAAGACTGCAGGAGCAACCTATATCTTCTGCCCACCGGTGAGATCGTGTACTTTGTTGCATCGGTCGTGGTGCTATTCAACGTGGAGGAGCAATGTCAGAGGCATTACACCGGCCACACCGATGACGTCAAATGCTTGGCGGTTCACCCTAACAAGTTGATCGTAGCCAGCGGCCAGTGCGCCGGCCACGACCGGGTTGATGCTAGGCCTCATGTCCGCGTGTGGAACTCCGTGTCTCTGGCGACGCTGGCGGTGCTGGGCGCCGGGCAGGCCGAGCGCGGCATATGGGCGGTGGCGTTCTCACGAGCGGACGGCGGATCGCTGCTCGCTGCCATACACGACGCGCCCGACCACGTCATCTCCGTCTGGGACTGGCAGAGGTCGGACAAGGGACACTGCCTAGCCGAAACCAAGTGCTCCGTGGACACGGTGGTCGCGGTGGAGTTCCATCCGCTCGACCGGAACCAGATAGTGACGTGCGGCAAGAACCACATCGCCTTCTGGACGCTGGACCAGACCAACGTGCTGTACAAGAGGATGGGGATCTTCGAGGCCCGCGACAAACCCAAATACGTCACCTGCCTCGCCTTCAACCACAACGGCGACGTGCTGTCTGGCGACTCGAGCGGCAACCTGACGGTGTGGGGCCGCGGCACCAACACGGTGCAGCGCCTCGTGCGCGCCGTGCACGACGGGCCCGTGTTCAGCGTCGCCTGCCTCAAGCACGGCGCCGTGCTGTCCGCCGGCGGGAAGGACGGCCGCATCGTCATGTTCGACGCCGACGTCAACCCCACCGGCCTCGAGAATGTGATTGAGGGTCACTACGGGGGCGTGCGAGTGCTGGCGGAGGGGCGCGGCAGCCAGCTGTACGTGGGCACCACCAAGAACTGCATCCTGCACGGAGACCTGGAGCTCGGCTTCTCCCCGGCCGTGCTGGGCCACGTGGAGGAGGTGTGGGGGCTGGCGGCGCACCCGTCGCTGGCGTGGTTCGCGTCGGCCGGCTGGGACCGCCTGCTGCAGCTCTGGGACGCGCTCAGCCACTCCACCGTCTGGAGCAAGGACATCGAGGTGACCACCCTGCCTTGTGTATTAGCACCGGACACAACGGAGTCTACAGACAAATTAACGTCTACCGTCTAA

Protein

MLEGEGAGLAARVAELEVRCARQAEELLCLRSTLADALRRLNALEGRAPPPSTGTQRNGTYTGSSGTPTRELRIRQPTYRETAKRTSSYGSSTSSLPQRRGPQHQSTGSLQSDSPASSSSLSPAPSPSPRATPAPLHVPHASQPYRSRNNSTSSKESVSPGVNLTKRWSSTGDFNAQGLIANSRFTTKSLLNLYSKPTQNGAILKHGTHTCQYNEEDGTMRMYLRGRPVVLHGPSDQDGLDPAKVAPPPQNKLKLEWVYGYRGKDCRSNLYLLPTGEIVYFVASVVVLFNVEEQCQRHYTGHTDDVKCLAVHPNKLIVASGQCAGHDRVDARPHVRVWNSVSLATLAVLGAGQAERGIWAVAFSRADGGSLLAAIHDAPDHVISVWDWQRSDKGHCLAETKCSVDTVVAVEFHPLDRNQIVTCGKNHIAFWTLDQTNVLYKRMGIFEARDKPKYVTCLAFNHNGDVLSGDSSGNLTVWGRGTNTVQRLVRAVHDGPVFSVACLKHGAVLSAGGKDGRIVMFDADVNPTGLENVIEGHYGGVRVLAEGRGSQLYVGTTKNCILHGDLELGFSPAVLGHVEEVWGLAAHPSLAWFASAGWDRLLQLWDALSHSTVWSKDIEVTTLPCVLAPDTTESTDKLTSTV

Uniprot

A0A194RHI0   A0A2A4K894   A0A2A4K906   A0A3S2LBT7   A0A1E1WGF9   A0A194QGH0   + More
A0A212EGP3   A0A1Y1MLA9   A0A1Y1MP72   A0A1B6GHG1   A0A1B6GGF5   A0A0N1PIS7   A0A1B6FTC5   A0A1B6EW60   A0A1B6E5R7   A0A1B6DR58   A0A069DXB9   A0A0V0G8W6   A0A224X711   A0A1L8E5X0   A0A0P4W3I4   A0A1B6DM98   E2BVP5   A0A195FQA6   T1HNH8   A0A067R0I5   A0A158NQ16   A0A3L8E3S1   A0A026WLT4   A0A2S2NG53   A0A2S2QK05   A0A139WJF0   A0A087ZRX1   E2AWK8   A0A0K8T785   A0A0K8TN38   A0A2J7RAS7   A0A2J7RAS4   A0A195BHY9   A0A1S3CUM0   A0A1S3CVX6   A0A1B6CDP9   A0A1B6C5U9   A0A1S3CUL7   A0A2J7RAS9   A0A2J7RAT3   A0A1B6DQ82   A0A1B6CJM1   A0A1B6C405   A0A1B6CUA1   A0A2H8TUR8   A0A1W4WEK8   A0A1W4WQR5   A0A1J1IY03   A0A1W4WQH9   A0A2J7RAT2   A0A0K8T6W4   A0A2J7RAT4   A0A0T6B477   V5GU02   E9IET7   E0VLI6   A0A1W4WPH5   U5EQE0   A0A1Q3F8C5   A0A1Q3F860   A0A1Q3F864   A0A1Q3F897   B0WEP1   A0A182V7F1   A0A182HQ83   A0A182WZN7   A0A182KSG4   A0A3R7QC40   A0A182SBY8   A0A182RKT3   A0A182WG51   A0A182JTI8   A0A182U392   A0A182P6K0   A0A182QYR8   A0A182MYQ3  

Pubmed

26354079    22118469    28004739    26334808    27129103    20798317    + More
24845553    21347285    30249741    24508170    18362917    19820115    26369729    21282665    20566863    20966253   

EMBL

KQ460154    KPJ17283.1    NWSH01000032    PCG80485.1    PCG80486.1    RSAL01000264    + More
RVE43289.1    GDQN01005103    JAT85951.1    KQ458880    KPJ04633.1    AGBW02015051    OWR40657.1    GEZM01028080    GEZM01028078    JAV86481.1    GEZM01028079    JAV86480.1    GECZ01007885    JAS61884.1    GECZ01008269    JAS61500.1    LADI01014861    KPJ20793.1    GECZ01016506    JAS53263.1    GECZ01027658    JAS42111.1    GEDC01020852    GEDC01004040    JAS16446.1    JAS33258.1    GEDC01009159    JAS28139.1    GBGD01000428    JAC88461.1    GECL01002301    JAP03823.1    GFTR01008191    JAW08235.1    GFDF01000040    JAV14044.1    GDKW01000591    JAI56004.1    GEDC01010520    JAS26778.1    GL450924    EFN80228.1    KQ981382    KYN42099.1    ACPB03010086    KK852804    KDR16251.1    ADTU01022867    ADTU01022868    ADTU01022869    QOIP01000001    RLU27055.1    KK107154    EZA56923.1    GGMR01003555    MBY16174.1    GGMS01008835    MBY78038.1    KQ971338    KYB27991.1    GL443346    EFN62172.1    GBRD01004545    JAG61276.1    GDAI01002057    JAI15546.1    NEVH01006564    PNF37935.1    PNF37939.1    KQ976464    KYM84468.1    GEDC01025780    JAS11518.1    GEDC01028417    GEDC01000038    JAS08881.1    JAS37260.1    PNF37937.1    PNF37940.1    GEDC01009453    JAS27845.1    GEDC01023680    JAS13618.1    GEDC01029060    JAS08238.1    GEDC01020300    JAS16998.1    GFXV01006162    MBW17967.1    CVRI01000064    CRL05093.1    PNF37936.1    GBRD01004544    JAG61277.1    PNF37941.1    LJIG01009928    KRT82100.1    GALX01004748    JAB63718.1    GL762722    EFZ20897.1    DS235271    EEB14242.1    GANO01003310    JAB56561.1    GFDL01011220    JAV23825.1    GFDL01011290    JAV23755.1    GFDL01011303    JAV23742.1    GFDL01011327    JAV23718.1    DS231910    EDS45757.1    APCN01003297    QCYY01001927    ROT74169.1    AXCN02001032   

Proteomes

UP000053240    UP000218220    UP000283053    UP000053268    UP000007151    UP000008237    + More
UP000078541    UP000015103    UP000027135    UP000005205    UP000279307    UP000053097    UP000007266    UP000005203    UP000000311    UP000235965    UP000078540    UP000079169    UP000192223    UP000183832    UP000009046    UP000002320    UP000075903    UP000075840    UP000076407    UP000075882    UP000283509    UP000075901    UP000075900    UP000075920    UP000075881    UP000075902    UP000075885    UP000075886    UP000075884   

Pfam

PF00400   WD40        + More
PF03451   HELP
PF00930   DPPIV_N

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR011047   Quinoprotein_ADH-like_supfam       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR005108   HELP       
IPR036322   WD40_repeat_dom_sf       
IPR002469   Peptidase_S9B_N       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A194RHI0   A0A2A4K894   A0A2A4K906   A0A3S2LBT7   A0A1E1WGF9   A0A194QGH0   + More
A0A212EGP3   A0A1Y1MLA9   A0A1Y1MP72   A0A1B6GHG1   A0A1B6GGF5   A0A0N1PIS7   A0A1B6FTC5   A0A1B6EW60   A0A1B6E5R7   A0A1B6DR58   A0A069DXB9   A0A0V0G8W6   A0A224X711   A0A1L8E5X0   A0A0P4W3I4   A0A1B6DM98   E2BVP5   A0A195FQA6   T1HNH8   A0A067R0I5   A0A158NQ16   A0A3L8E3S1   A0A026WLT4   A0A2S2NG53   A0A2S2QK05   A0A139WJF0   A0A087ZRX1   E2AWK8   A0A0K8T785   A0A0K8TN38   A0A2J7RAS7   A0A2J7RAS4   A0A195BHY9   A0A1S3CUM0   A0A1S3CVX6   A0A1B6CDP9   A0A1B6C5U9   A0A1S3CUL7   A0A2J7RAS9   A0A2J7RAT3   A0A1B6DQ82   A0A1B6CJM1   A0A1B6C405   A0A1B6CUA1   A0A2H8TUR8   A0A1W4WEK8   A0A1W4WQR5   A0A1J1IY03   A0A1W4WQH9   A0A2J7RAT2   A0A0K8T6W4   A0A2J7RAT4   A0A0T6B477   V5GU02   E9IET7   E0VLI6   A0A1W4WPH5   U5EQE0   A0A1Q3F8C5   A0A1Q3F860   A0A1Q3F864   A0A1Q3F897   B0WEP1   A0A182V7F1   A0A182HQ83   A0A182WZN7   A0A182KSG4   A0A3R7QC40   A0A182SBY8   A0A182RKT3   A0A182WG51   A0A182JTI8   A0A182U392   A0A182P6K0   A0A182QYR8   A0A182MYQ3  

PDB

4CI8     E-value=2.72991e-121,     Score=1116

KEGG

101743885    K18595 echinoderm microtubule-associated protein-like 1/2 | (RefSeq) echinoderm microtubule-associat

GO

GO:0016021   GO:0000226   GO:0008017   GO:0005515   GO:0051087   GO:0005488   GO:0015992   GO:0005524   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Length:

642

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.19712

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00880

outside

1  -  642

 

 

Pi

199.295086

Theta

165.755729

Tajima's D

0.758187

CLR

0.553785

CSRT

0.591370431478426

Interpretation

Uncertain