Gene

KWMTBOMO11112  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008225

Annotation

PREDICTED:_echinoderm_microtubule-associated_protein-like_2_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):13189656-13197185      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 4.309

CDS

ATGACGTGTGTGCGTGCGCAGGAGCGGGCGCAGTGCGTGTCGTGGTCGGCGGACGGCGGCGTGCTGGCCGTGGGCTGCCTGTCGGGGCGCTGGCTGGTGCTGGACCCGCACTCGCGCGACGTGCTGGCGCAGCACCAGGACGGTTCTGAGCCGATCCAAACAATCCAGTACTCGCCGGACAACAAGATGGTCGCCCTCGGCTCCCGGGACAACTTCATATACATTTACCGGGTCGAAGACAACGGCGCTAGGTACAGTCGCCTCGGAAAGTGTTTGGGCCACTCCAGTTATATCACGCACCTGGACTGGTCTGAGGACAGTCAGTACATCAGAAGCAACTCCGGGGACTACGAGCTGCTCTTCTGGAACGCGACGACGTGTCGGCAGGTGACCAGCCCGTCGTCCCTGCGCGACGCGGCGTGGGCCAGCAACACGTGCCCCATCACCTTCACGACGGTGGGCGTGTGGCCGGAGAACGCCGACGGAACCGACATCAACTCGTGCGCGCGGTCGCGCGACGGTCGACTGGCGGCCACCGGTGACGACTTCGGCAAGGTCAAGCTGTACGCCTACCCCGTCACGCAACCCAAGTCGCTGTGCCACGCGTACGGCGGGCACTCGTCGCACGTGACGTGCGTGCGCTTCACGCAGGACGGCGCGCGCCTGCTGTCCGCCGGCGGACTCGACACCAGCCTCATGCAGTGGCTCGTCGACTGA

Protein

MTCVRAQERAQCVSWSADGGVLAVGCLSGRWLVLDPHSRDVLAQHQDGSEPIQTIQYSPDNKMVALGSRDNFIYIYRVEDNGARYSRLGKCLGHSSYITHLDWSEDSQYIRSNSGDYELLFWNATTCRQVTSPSSLRDAAWASNTCPITFTTVGVWPENADGTDINSCARSRDGRLAATGDDFGKVKLYAYPVTQPKSLCHAYGGHSSHVTCVRFTQDGARLLSAGGLDTSLMQWLVD

Uniprot

H9JFC8   A0A1E1VY92   A0A2H1VIU4   A0A2A4K9M8   A0A2A4K8D9   A0A2A4K894   + More
A0A2A4K906   A0A194QGH0   A0A194RHI0   A0A212EGP3   S4PXY0   A0A3S2LBT7   A0A2A3E6Y3   V9IJW5   U4UTP0   U4UAB4   N6TNN8   A0A1S3CUM0   A0A0C9QPU2   A0A1S3CUL7   A0A1S3CVX6   A0A310SN72   A0A1B6MV63   A0A1B6C5U9   A0A1B6CDP9   A0A1B6DR58   A0A1B6E5R7   A0A1B6DM98   A0A0L7QRZ9   A0A1B6CUA1   A0A1B6C405   A0A1B6CJM1   A0A1B6DQ82   A0A0N0U7S6   E2BVP5   A0A1W4WQR5   A0A1W4WQH9   J9JMN4   A0A1W4WPH5   A0A1W4WEK8   A0A2J7RAT1   F4WT69   A0A2S2PDB4   A0A2S2QK05   A0A195FQA6   A0A1D2MW49   E2AWK8   A0A1B6GM53   A0A2J7RAS5   A0A2H8TUR8   A0A139WJF0   A0A2J7RAT5   A0A1Y1MLB2   A0A0K8TN38   A0A0K8T6X3   A0A1B6GHG1   A0A1B6GGF5   A0A1B6FTC5   A0A1B6EW60   A0A1B0DFZ2   A0A2J7RAT2   A0A087ZRX1   A0A2J7RAS4   A0A1Y1MP72   A0A1Y1MLA9   A0A2J7RAT4   A0A2J7RAT3   A0A2J7RAS9   A0A158NQ16   A0A1L8E5L9   A0A1L8E5T6   A0A0K8T6W4   A0A0K8T785   A0A026WLT4   A0A1L8E5N9   A0A154PPU0   B7PYV3   A0A1L8E5X0   A0A3L8E3S1   A0A069DXB9   A0A0T6B125   A0A0P4W3I4   T1HNH8   A0A0K2T0W8   A0A224X711   A0A2L2YQM7   A0A0V0G8W6   A0A067R0I5   V5HQ87   V5HF14   A0A3R7QC40   A0A195BHY9   A0A023GNB2   A0A131XN57   E0VLI6   L7MFU3   A0A1E1XMU6   T1J5S7   A0A1Z5LFG3   A0A0B7B5X4  

Pubmed

19121390    26354079    22118469    23622113    23537049    20798317    + More
21719571    27289101    18362917    19820115    28004739    26369729    26823975    21347285    24508170    30249741    26334808    27129103    26561354    24845553    25765539    28049606    20566863    25576852    29209593    28528879   

EMBL

BABH01038266    BABH01038267    GDQN01011356    GDQN01005973    JAT79698.1    JAT85081.1    + More
ODYU01002804    SOQ40755.1    NWSH01000032    PCG80483.1    PCG80487.1    PCG80485.1    PCG80486.1    KQ458880    KPJ04633.1    KQ460154    KPJ17283.1    AGBW02015051    OWR40657.1    GAIX01004253    JAA88307.1    RSAL01000264    RVE43289.1    KZ288358    PBC27042.1    JR051113    AEY61433.1    KI208511    ERL95873.1    KB632166    ERL89298.1    APGK01028059    APGK01028060    KB740684    ENN79593.1    GBYB01002682    JAG72449.1    KQ762692    OAD55533.1    GEBQ01027026    GEBQ01000205    JAT12951.1    JAT39772.1    GEDC01028417    GEDC01000038    JAS08881.1    JAS37260.1    GEDC01025780    JAS11518.1    GEDC01009159    JAS28139.1    GEDC01020852    GEDC01004040    JAS16446.1    JAS33258.1    GEDC01010520    JAS26778.1    KQ414771    KOC61329.1    GEDC01020300    JAS16998.1    GEDC01029060    JAS08238.1    GEDC01023680    JAS13618.1    GEDC01009453    JAS27845.1    KQ435692    KOX81124.1    GL450924    EFN80228.1    ABLF02009988    NEVH01006564    PNF37943.1    GL888332    EGI62598.1    GGMR01014810    MBY27429.1    GGMS01008835    MBY78038.1    KQ981382    KYN42099.1    LJIJ01000477    ODM97034.1    GL443346    EFN62172.1    GECZ01006366    JAS63403.1    PNF37938.1    GFXV01006162    MBW17967.1    KQ971338    KYB27991.1    PNF37942.1    GEZM01028077    JAV86482.1    GDAI01002057    JAI15546.1    GBRD01004542    GDHC01019102    JAG61279.1    JAP99526.1    GECZ01007885    JAS61884.1    GECZ01008269    JAS61500.1    GECZ01016506    JAS53263.1    GECZ01027658    JAS42111.1    AJVK01015161    PNF37936.1    PNF37939.1    GEZM01028079    JAV86480.1    GEZM01028080    GEZM01028078    JAV86481.1    PNF37941.1    PNF37940.1    PNF37937.1    ADTU01022867    ADTU01022868    ADTU01022869    GFDF01000086    JAV13998.1    GFDF01000085    JAV13999.1    GBRD01004544    JAG61277.1    GBRD01004545    JAG61276.1    KK107154    EZA56923.1    GFDF01000061    JAV14023.1    KQ435020    KZC13903.1    ABJB010711692    ABJB011044693    DS822268    EEC11775.1    GFDF01000040    JAV14044.1    QOIP01000001    RLU27055.1    GBGD01000428    JAC88461.1    LJIG01016244    KRT81184.1    GDKW01000591    JAI56004.1    ACPB03010086    HACA01002318    CDW19679.1    GFTR01008191    JAW08235.1    IAAA01034525    LAA09675.1    GECL01002301    JAP03823.1    KK852804    KDR16251.1    GANP01008375    JAB76093.1    GANP01008374    JAB76094.1    QCYY01001927    ROT74169.1    KQ976464    KYM84468.1    GBBM01000785    JAC34633.1    GEFH01000819    JAP67762.1    DS235271    EEB14242.1    GACK01002169    JAA62865.1    GFAA01002762    JAU00673.1    JH431868    GFJQ02000818    JAW06152.1    HACG01040841    CEK87706.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000283053    + More
UP000242457    UP000030742    UP000019118    UP000079169    UP000053825    UP000053105    UP000008237    UP000192223    UP000007819    UP000235965    UP000007755    UP000078541    UP000094527    UP000000311    UP000007266    UP000092462    UP000005203    UP000005205    UP000053097    UP000076502    UP000001555    UP000279307    UP000015103    UP000027135    UP000283509    UP000078540    UP000009046   

PRIDE

H9JFC8   

Pfam

PF00400   WD40        + More
PF03451   HELP
PF00930   DPPIV_N
PF12894   ANAPC4_WD40

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR005108   HELP       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR036430   RNase_T2-like_sf       
IPR011044   Quino_amine_DH_bsu       
IPR002469   Peptidase_S9B_N       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF50998   SSF50998       
SSF55895   SSF55895       
SSF50969   SSF50969       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JFC8   A0A1E1VY92   A0A2H1VIU4   A0A2A4K9M8   A0A2A4K8D9   A0A2A4K894   + More
A0A2A4K906   A0A194QGH0   A0A194RHI0   A0A212EGP3   S4PXY0   A0A3S2LBT7   A0A2A3E6Y3   V9IJW5   U4UTP0   U4UAB4   N6TNN8   A0A1S3CUM0   A0A0C9QPU2   A0A1S3CUL7   A0A1S3CVX6   A0A310SN72   A0A1B6MV63   A0A1B6C5U9   A0A1B6CDP9   A0A1B6DR58   A0A1B6E5R7   A0A1B6DM98   A0A0L7QRZ9   A0A1B6CUA1   A0A1B6C405   A0A1B6CJM1   A0A1B6DQ82   A0A0N0U7S6   E2BVP5   A0A1W4WQR5   A0A1W4WQH9   J9JMN4   A0A1W4WPH5   A0A1W4WEK8   A0A2J7RAT1   F4WT69   A0A2S2PDB4   A0A2S2QK05   A0A195FQA6   A0A1D2MW49   E2AWK8   A0A1B6GM53   A0A2J7RAS5   A0A2H8TUR8   A0A139WJF0   A0A2J7RAT5   A0A1Y1MLB2   A0A0K8TN38   A0A0K8T6X3   A0A1B6GHG1   A0A1B6GGF5   A0A1B6FTC5   A0A1B6EW60   A0A1B0DFZ2   A0A2J7RAT2   A0A087ZRX1   A0A2J7RAS4   A0A1Y1MP72   A0A1Y1MLA9   A0A2J7RAT4   A0A2J7RAT3   A0A2J7RAS9   A0A158NQ16   A0A1L8E5L9   A0A1L8E5T6   A0A0K8T6W4   A0A0K8T785   A0A026WLT4   A0A1L8E5N9   A0A154PPU0   B7PYV3   A0A1L8E5X0   A0A3L8E3S1   A0A069DXB9   A0A0T6B125   A0A0P4W3I4   T1HNH8   A0A0K2T0W8   A0A224X711   A0A2L2YQM7   A0A0V0G8W6   A0A067R0I5   V5HQ87   V5HF14   A0A3R7QC40   A0A195BHY9   A0A023GNB2   A0A131XN57   E0VLI6   L7MFU3   A0A1E1XMU6   T1J5S7   A0A1Z5LFG3   A0A0B7B5X4  

PDB

4CI8     E-value=4.62469e-72,     Score=687

KEGG

101743885    K18595 echinoderm microtubule-associated protein-like 1/2 | (RefSeq) echinoderm microtubule-associat

GO

GO:0016021   GO:0003723   GO:0033897   GO:0000226   GO:0008017   GO:0004402   GO:0003743   GO:0005515   GO:0051087   GO:0005488   GO:0015992   GO:0005524   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Length:

238

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

6.91890999999999

Exp number, first 60 AAs:

6.89708

Total prob of N-in:

0.49569

outside

1  -  238

 

 

Pi

184.788902

Theta

147.506072

Tajima's D

0.485409

CLR

0.101846

CSRT

0.510524473776311

Interpretation

Uncertain