Gene

KWMTBOMO11110  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008226

Annotation

eukaryotic_translation_initiation_factor_5_[Bombyx_mori]

Location

Bomo_Chr18(-):13148337-13176485      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.628

CDS

ATGGGTTCCTTAAACGTGAACCGTAACGTCTCCGATGCGTTCTACCGGTACAAGATGCCGCGGATATGCGCCAAGGTCGAAGGGAAGGGGAACGGCATCAAGACGGTCATCGTCAACATGCCTGAAGTCGCCAAGGCGCTGGGGAGACCAGCCACGTACCCAACAAAGTACTTTGGTTGTGAATTGGGTGCCCAGACTCAGTTTGACTTCAAGAATGAGCGTTTCATTGTCAACGGAAGCCATGACTCATCTAAACTTCAAGATCTATTGGACGGATTTATTCGTAAATTCGTGCTGTGCCCTGAGTGCGACAACCCCGAGACCGAGCTGATTGTCTCCACGAAGCGGAACACCATCTCCCAAGGATGCAAGGCCTGCGGTTACCATGGACAGCTTGACTTCAATCACAAGTTGAATACTTTTATACTCAAGAACCCGCCTGCCAATGATCCGGCTGTGCAAGGCTCTTCACTGACTGAGGGCAATCGTGGAAAACGCTCGAAGCGCTCTGGTCCTGGATCCAACAACACTGCGACCAACGGCAGCCACGAGGGACAAGAAACTGAAGCTAAAAATGAACCGGAAGCGGTGTCGAGTCCTACAGCTACCGCAGCTCCGAGCACTAAGAAGGAGAAGTCCAAGAAAACTGGCGATGATGGCGATGAGGACGACGACGGCTGGACCGTGGATGTCAGCGAGGAGGCTGTGCGGGCCAGGATGCAAGATCTAACTGAAGGAGCTAAGATCATAACATTGTCAGAAGACAGTGAGAAGAATGAGAAGCAGCGGATGGATCTGTTCTATGCATTTTTGAAGCAACGAGCAGCCAGCGGTCAGGTGCAGGGAACCAAAGCCATCTCTGAGATCCTGCACGAGGCCGAGAGATTGGAAGTGAAGTCGAAGGCGCCGCTGGTGCTGTTCGAGGTGCTGGTGAACGCGGCGTCGGTGGGCGGCGACGTGAAGAAGCACCGCGCTCTGCTGCTGCGCTTCACGCGCCAAGACCCGCGCGCGCAGCGAGCCGCCCTGCACGCCCTCACCGCGCTCGCGCACCACCACGCCGCGCTGCTGCCGCGCGTGCCCGCCGTGCTCAAGCTTCTTTACGACGAAGACATCGTAGAAGAGAAGGCTATACTGGAGTGGGCTAGCAAACCATCGCGCAAATACGCATCCAAGGAAGTCGTAGCCGAAGTGAGGAAACGGGCCCAACCCTTCCTCGACTGGCTGCAGCAGGCCGAGGAGGACTCGAGTGACGACGACGACGAGGAGGAAGATATCGAGATCGAGTACGACGACCGCGCCAAGGCGACCCCCATCAAGGCCGTGGCGACTGCGGCCAACAACAAACCGAAGCAGGAAGAAGACGATGACGATTTCGATATCGACGCCATTTAA

Protein

MGSLNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDSSKLQDLLDGFIRKFVLCPECDNPETELIVSTKRNTISQGCKACGYHGQLDFNHKLNTFILKNPPANDPAVQGSSLTEGNRGKRSKRSGPGSNNTATNGSHEGQETEAKNEPEAVSSPTATAAPSTKKEKSKKTGDDGDEDDDGWTVDVSEEAVRARMQDLTEGAKIITLSEDSEKNEKQRMDLFYAFLKQRAASGQVQGTKAISEILHEAERLEVKSKAPLVLFEVLVNAASVGGDVKKHRALLLRFTRQDPRAQRAALHALTALAHHHAALLPRVPAVLKLLYDEDIVEEKAILEWASKPSRKYASKEVVAEVRKRAQPFLDWLQQAEEDSSDDDDEEEDIEIEYDDRAKATPIKAVATAANNKPKQEEDDDDFDIDAI

Uniprot

Q0ZB74   A0A2H1VIU9   A0A1E1W4Z3   A0A194QME0   A0A194RIA0   A0A212EGP5   + More
Q1A4T6   A0A2A4K9U5   S5N3Z2   S4PFZ8   A0A1B6MII3   A0A0K8TRP3   A0A0C9Q139   T1D408   A0A2J7PWA2   A0A026VWF8   A0A0P4VTX6   R4FNT1   A0A2A3ERU2   A0A088AP20   A0A1B6E3K8   A0A224XNV5   A0A067QT43   T1E2M2   K7J337   A0A0M8ZT33   E2ATE1   A0A0A9X1L2   A0A069DTN5   A0A154PNS0   A0A023F8Y9   A0A195D5F3   A0A1W4X3Q3   A0A195EJS1   A0A195BFU0   F4X2B7   A0A151X6D1   A0A195FN48   A0A158NJN0   A0A1J1HPP9   U5EXY4   T1DPV6   A0A0T6AZX0   W5J9Y9   D2A3J2   A0A2M4BM37   A0A2M4A2P3   A0A2M4BM36   A0A1L8DSB3   A0A2M3YZ48   A0A084W3J1   N6UGW8   A0A182FVI3   A0A2M3YZ22   A0A0L7QRG6   A0A1I8PQZ4   A0A182PI91   A0A182G5X2   A0A182J216   A0A336JZ43   A0A182MXI5   A0A182YEB8   A0A023ESH2   A0A0L0BM06   A0A182TDI3   A0A182RCZ2   A0A182WDE1   A0A182ME45   A0A1I8JW08   A0A182VL43   A0A182LHN7   Q7QHJ0   A0A182HFX9   Q17PW1   T1PCU9   A0A2H8TV07   A0A1Q3F8L5   A0A182KC71   A0A182QXD1   B0W0M0   A0A1Y1L6V3   J9K088   A0A0J7L661   E0VLG6   W8B8V3   A0A1A9WSZ9   A0A1A9X8Q0   A0A1B0C0E7   A0A034VGT6   A0A0A1XFT7   A0A1A9ZWY2   A0A0K8SM34   A0A0K8VE40   A0A1A9UQE2   B4L5G0   A0A3Q0JG87   B4NCA3   B4MAX1   A0A1B0CSU2   A0A3B0KKX5  

Pubmed

26354079    22118469    16760394    23861954    23622113    26369729    + More
24330624    24508170    30249741    27129103    24845553    20075255    20798317    25401762    26823975    26334808    25474469    21719571    21347285    20920257    23761445    18362917    19820115    24438588    23537049    26483478    25244985    24945155    26108605    20966253    12364791    14747013    17210077    17510324    25315136    28004739    20566863    24495485    25348373    25830018    17994087   

EMBL

DQ645462    ABG54290.1    ODYU01002804    SOQ40753.1    GDQN01009007    GDQN01000841    + More
GDQN01000314    JAT82047.1    JAT90213.1    JAT90740.1    KQ458880    KPJ04636.1    KQ460154    KPJ17287.1    AGBW02015051    OWR40655.1    DQ333351    ABC61144.1    NWSH01000032    PCG80490.1    KC961304    AGR57075.1    GAIX01003832    JAA88728.1    GEBQ01019059    GEBQ01016528    GEBQ01004282    JAT20918.1    JAT23449.1    JAT35695.1    GDAI01000569    JAI17034.1    GBYB01007628    JAG77395.1    GALA01001148    JAA93704.1    NEVH01020936    PNF20601.1    KK107928    QOIP01000001    EZA47159.1    RLU27049.1    GDKW01000497    JAI56098.1    ACPB03017681    GAHY01000453    JAA77057.1    KZ288193    PBC33992.1    GEDC01024965    GEDC01013149    GEDC01004819    JAS12333.1    JAS24149.1    JAS32479.1    GFTR01006306    JAW10120.1    KK852969    KDR13109.1    GALA01001145    JAA93707.1    KQ435859    KOX70570.1    GL442548    EFN63308.1    GBHO01030053    GBHO01030052    GBRD01011961    GBRD01011960    GDHC01014561    GDHC01008306    JAG13551.1    JAG13552.1    JAG53863.1    JAQ04068.1    JAQ10323.1    GBGD01001456    JAC87433.1    KQ435007    KZC13531.1    GBBI01000791    JAC17921.1    KQ976818    KYN08113.1    KQ978782    KYN28391.1    KQ976490    KYM83468.1    GL888575    EGI59399.1    KQ982482    KYQ55946.1    KQ981424    KYN41821.1    ADTU01018078    CVRI01000015    CRK90032.1    GANO01000705    JAB59166.1    GAMD01002999    JAA98591.1    LJIG01016388    KRT80751.1    ADMH02002067    ETN59670.1    KQ971338    EFA01900.1    GGFJ01005008    MBW54149.1    GGFK01001742    MBW35063.1    GGFJ01005009    MBW54150.1    GFDF01004793    JAV09291.1    GGFM01000737    MBW21488.1    ATLV01020054    KE525293    KFB44785.1    APGK01008952    APGK01020978    APGK01051622    KB741197    KB740274    KB737822    KB632308    ENN72983.1    ENN80970.1    ENN82908.1    ERL91965.1    GGFM01000762    MBW21513.1    KQ414778    KOC61218.1    JXUM01044847    KQ561415    KXJ78656.1    UFQS01000027    UFQT01000027    SSW97719.1    SSX18105.1    GAPW01001401    JAC12197.1    JRES01001651    KNC21155.1    AXCM01008583    AAAB01008816    EAA05225.2    APCN01005436    CH477188    EAT48834.1    KA646479    AFP61108.1    GFXV01006290    MBW18095.1    GFDL01011125    JAV23920.1    AXCN02001714    DS231818    EDS41322.1    GEZM01063108    GEZM01063107    JAV69304.1    ABLF02031739    ABLF02031741    LBMM01000532    KMQ98121.1    DS235271    EEB14222.1    GAMC01016950    GAMC01016949    JAB89606.1    JXJN01023561    GAKP01017268    GAKP01017267    JAC41684.1    GBXI01004496    JAD09796.1    GBRD01017772    GBRD01011959    JAG53865.1    GDHF01031099    GDHF01028759    GDHF01028251    GDHF01022750    GDHF01022203    GDHF01017863    GDHF01015529    GDHF01012742    GDHF01008220    GDHF01006614    GDHF01005950    JAI21215.1    JAI23555.1    JAI24063.1    JAI29564.1    JAI30111.1    JAI34451.1    JAI36785.1    JAI39572.1    JAI44094.1    JAI45700.1    JAI46364.1    CH933811    EDW06419.1    CH964239    EDW82462.1    CH940655    EDW66380.1    AJWK01026604    AJWK01026605    AJWK01026606    OUUW01000011    SPP86446.1   

Proteomes

UP000053268    UP000053240    UP000007151    UP000202317    UP000218220    UP000208100    + More
UP000235965    UP000053097    UP000279307    UP000015103    UP000242457    UP000005203    UP000027135    UP000002358    UP000053105    UP000000311    UP000076502    UP000078542    UP000192223    UP000078492    UP000078540    UP000007755    UP000075809    UP000078541    UP000005205    UP000183832    UP000000673    UP000007266    UP000030765    UP000019118    UP000030742    UP000069272    UP000053825    UP000095300    UP000075885    UP000069940    UP000249989    UP000075880    UP000075884    UP000076408    UP000037069    UP000075902    UP000075900    UP000075920    UP000075883    UP000076407    UP000075903    UP000075882    UP000007062    UP000075840    UP000008820    UP000095301    UP000075881    UP000075886    UP000002320    UP000007819    UP000036403    UP000009046    UP000091820    UP000092443    UP000092460    UP000092445    UP000078200    UP000009192    UP000079169    UP000007798    UP000008792    UP000092461    UP000268350   

PRIDE

Q0ZB74   

Pfam

PF01873   eIF-5_eIF-2B        + More
PF02020   W2
PF05649   Peptidase_M13_N
PF01431   Peptidase_M13

Interpro

IPR003307   W2_domain        + More
IPR016190   Transl_init_fac_IF2/IF5_Zn-bd       
IPR016024   ARM-type_fold       
IPR016189   Transl_init_fac_IF2/IF5_N       
IPR016021   MIF4-like_sf       
IPR002735   Transl_init_fac_IF2/IF5       
IPR042089   Peptidase_M13_dom_2       
IPR008753   Peptidase_M13_N       
IPR024079   MetalloPept_cat_dom_sf       
IPR018497   Peptidase_M13_C       
IPR000718   Peptidase_M13       

SUPFAM

SSF75689   SSF75689        + More
SSF48371   SSF48371       
SSF100966   SSF100966       

Gene 3D

1.25.40.180     1.10.1380.10     3.40.390.10    

CDD

cd08662  M13

ProteinModelPortal

Q0ZB74   A0A2H1VIU9   A0A1E1W4Z3   A0A194QME0   A0A194RIA0   A0A212EGP5   + More
Q1A4T6   A0A2A4K9U5   S5N3Z2   S4PFZ8   A0A1B6MII3   A0A0K8TRP3   A0A0C9Q139   T1D408   A0A2J7PWA2   A0A026VWF8   A0A0P4VTX6   R4FNT1   A0A2A3ERU2   A0A088AP20   A0A1B6E3K8   A0A224XNV5   A0A067QT43   T1E2M2   K7J337   A0A0M8ZT33   E2ATE1   A0A0A9X1L2   A0A069DTN5   A0A154PNS0   A0A023F8Y9   A0A195D5F3   A0A1W4X3Q3   A0A195EJS1   A0A195BFU0   F4X2B7   A0A151X6D1   A0A195FN48   A0A158NJN0   A0A1J1HPP9   U5EXY4   T1DPV6   A0A0T6AZX0   W5J9Y9   D2A3J2   A0A2M4BM37   A0A2M4A2P3   A0A2M4BM36   A0A1L8DSB3   A0A2M3YZ48   A0A084W3J1   N6UGW8   A0A182FVI3   A0A2M3YZ22   A0A0L7QRG6   A0A1I8PQZ4   A0A182PI91   A0A182G5X2   A0A182J216   A0A336JZ43   A0A182MXI5   A0A182YEB8   A0A023ESH2   A0A0L0BM06   A0A182TDI3   A0A182RCZ2   A0A182WDE1   A0A182ME45   A0A1I8JW08   A0A182VL43   A0A182LHN7   Q7QHJ0   A0A182HFX9   Q17PW1   T1PCU9   A0A2H8TV07   A0A1Q3F8L5   A0A182KC71   A0A182QXD1   B0W0M0   A0A1Y1L6V3   J9K088   A0A0J7L661   E0VLG6   W8B8V3   A0A1A9WSZ9   A0A1A9X8Q0   A0A1B0C0E7   A0A034VGT6   A0A0A1XFT7   A0A1A9ZWY2   A0A0K8SM34   A0A0K8VE40   A0A1A9UQE2   B4L5G0   A0A3Q0JG87   B4NCA3   B4MAX1   A0A1B0CSU2   A0A3B0KKX5  

PDB

2E9H     E-value=6.0739e-65,     Score=629

KEGG

733088    K03262 translation initiation factor 5 | (RefSeq) eukaryotic translation initiation factor 5

PATHWAY

03013    RNA transport - Bombyx mori (domestic silkworm)
04214    Apoptosis - fly - Bombyx mori (domestic silkworm)

GO

GO:0003743   GO:0001731   GO:0071074   GO:0005829   GO:0005092   GO:0001732   GO:0004222   GO:0006413   GO:0005488   GO:0005515   GO:0015992   GO:0005524   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR11733  

Length:

463

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00419

Exp number, first 60 AAs:

0.00043

Total prob of N-in:

0.00537

outside

1  -  463

 

 

Pi

193.991015

Theta

169.328022

Tajima's D

-1.621794

CLR

0.589103

CSRT

0.0457977101144943

Interpretation

Possibly Positive selection