Gene

KWMTBOMO11098  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008572

Annotation

PREDICTED:_speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase-like_[Amyelois_transitella]

Location

Bomo_Chr18(+):12820876-12827070      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.298

CDS

ATGGAGACAAAGGTAACAACGCCGGCGGATGAAACCCCCACGACCGCCGCCCCCCCACAACCCACACCACCCACACCACAATCGGCACAGACCGCACCAAAATCCGCTTCGAAAACTGCACCACAAGATGTAACGAAACAACCGTCAGAAGTTTCACCACAACCTGCACCGAAGCAACCTTCCAAGGCTGCGCCACAACCCGCATCGAAGCAGTCTTCGAAAGCTACCCCGCAATGTACACCGAAACAAGCCCCGCCGAAGCCCGCCCCCCGGCAGCCAGCCCCGCAACCTGCGCCCCGAAGGAAGAACGGCGCGTCCCCAGCGCCTACAACTTCGCAACCAAAACCCGACACACAGAGCACAACTAAAGAGAAGGCAACCAAAATGATTATTGTGACAGGTTTTCCTCCATATGTCCAGCCCGTGGACTTAATAAGAACTTTCAATGTATTTGGATCAGTCCAAATCAATAAGCTGAACCCAAGATTCTCTACGATCACATTCTCATCAGAAGAGGAAGCTGCGGAGGCCGTCAAATGTAACAATGAACTGAACATCTACGGAGAGTTTCTAACAATCAAATTGTACTACGGACGGCCTTGTGAGGAACCCAAACACAGTCCCAAGAGAGAATTTGCAAGGACCAAAGAGAAATCCATAACCATAGATCCGAAGAAGATTGACATGTCTGGTGATTTTCACTCTCAACTCGACAACATTCTGGCTGCTGTGAGACTGACCCAAGAGGACGTGACCGCCCTCACTCAACTCTATACAGACGTTGAATACGCTCTGCAGTCAATATGGCCTGGTTGCAAAACAGTGCCCTTTGGTTCTATAACCACGGGGCTGGGAGTTAAAACGAGCGACGCAGACTGTTTCGTGGATGTGCCGCCGCCCTTCAGACACCCCCAGGCCAACTTCGTCGTCAAGGCCAAGAAGATCCTTCAGCACTATCCGGGAACGTTCTCTGAGATACTGTGCATACCTCGGGCCAACACCCCCATCGTCAAGTTCTTCCACATCCCCACCGAAACCAACTGCGATCTGACCTTCAAGACTCCGTTGGGAGCACACAACAGCAAGCTGATCGCGTTCCTCCTGCACGCGGACCCCAGGCTCATCCCGATGGCCGTGGTCATCAAGTACTGGGCTAAAGTGCACGACTTCTCTGGAACCGGGAAACTGACGAACTACGCTCTGACGATGATGATCATATTTTATCTGCAGCAGCCGCCCATCTCGATCCTGCCGGCGGTGGCGTGGCTGCAGAGTGACGCTTCCACACACTTCCTCGTAGACTCCTGGAATGTGGGCTTCATGGGCCAGAGACAGCTGCTGCCACCCTCCTCCAACACTTCCTCCATATCGGAGCTCCTAGGAGGCTTCTTCGAGTATTATTCCTCGTTCAACTTTGACGAGATGGTCGTGTGTCCATACTTAGGTGCGCCGATAAAAAAAGCGTTATTTAGAGACACATTTTTGCTGCCCAAAGAGTTTGATCGGTACAAGATGAATGTGTTGGAGAATATGGTGCTGCCCATGCGCCACGGCTCCGCCATCTGCGTGCAGGACCCCTTCGAGCAGTCGCACAACTTAGCGTCCGCCATCACCTCCAGGCTCGCCTCCGACATCAAAGCTTACTTCAAGCACGCGGCGAACGCTTACGAAAAGGAAAAGTTGAATCGTAATTTGGAGTTCCTAAAGATCATACTGCTCCAAGCACCCAATCTGCTGCGTCCTAAAACCCATCAAGAGTACCGAGTGAACATATTCCGCAGGATTATTGCGGCGATAGTGGATCCGGATTGGAAATCCGTAGTCAGAGAAATCGTGTTTAGGATATTCGAGAAACTGCTGAAGATTACATTAGGGAAGTGTGAGGAAACAATGAAGCCGGACAGTAAAAAACAGAAGGAAAAGTACTCCGGACAAGTGACGAAGGCAATATGGAAGCGAAAAAAATTCACCAGATTATACAGCGCCACCAACCTGGACTTCGAGAGCCAACAGAAGAAGATAACCGAGGAGATCATGCTGGTCGAGAAGCAGGCTATCGAAATGAACTTCTACTTGATTCTAACATTTTCTGACAATCCCACCAGCGCCGTCATCTCGCTGCGGAACGCTTCGCCCGGACAAATAGAGAACTTTAGAGAATTTGGAAAGTTTTTCATTTCGAGCATGCAGCAGTGGTTCCTAGAACTAGTGAAACCCTATTCCACGCCCATAAATGAAAACGTAGCGGACACGATAAAAATGATAGACAAGAACGCCGAGGAGCCGGATACGTCTGACAGTGACGCGGAAAATTTGCCGCAAAACCAATCTGAGGAATGTAACGAGAATGACATTATAGTGACGGACAAAATGGCCACTAAAGAAGCCGGCAACCTCAGCGAAGAATGTACTACGCATTAA

Protein

METKVTTPADETPTTAAPPQPTPPTPQSAQTAPKSASKTAPQDVTKQPSEVSPQPAPKQPSKAAPQPASKQSSKATPQCTPKQAPPKPAPRQPAPQPAPRRKNGASPAPTTSQPKPDTQSTTKEKATKMIIVTGFPPYVQPVDLIRTFNVFGSVQINKLNPRFSTITFSSEEEAAEAVKCNNELNIYGEFLTIKLYYGRPCEEPKHSPKREFARTKEKSITIDPKKIDMSGDFHSQLDNILAAVRLTQEDVTALTQLYTDVEYALQSIWPGCKTVPFGSITTGLGVKTSDADCFVDVPPPFRHPQANFVVKAKKILQHYPGTFSEILCIPRANTPIVKFFHIPTETNCDLTFKTPLGAHNSKLIAFLLHADPRLIPMAVVIKYWAKVHDFSGTGKLTNYALTMMIIFYLQQPPISILPAVAWLQSDASTHFLVDSWNVGFMGQRQLLPPSSNTSSISELLGGFFEYYSSFNFDEMVVCPYLGAPIKKALFRDTFLLPKEFDRYKMNVLENMVLPMRHGSAICVQDPFEQSHNLASAITSRLASDIKAYFKHAANAYEKEKLNRNLEFLKIILLQAPNLLRPKTHQEYRVNIFRRIIAAIVDPDWKSVVREIVFRIFEKLLKITLGKCEETMKPDSKKQKEKYSGQVTKAIWKRKKFTRLYSATNLDFESQQKKITEEIMLVEKQAIEMNFYLILTFSDNPTSAVISLRNASPGQIENFREFGKFFISSMQQWFLELVKPYSTPINENVADTIKMIDKNAEEPDTSDSDAENLPQNQSEECNENDIIVTDKMATKEAGNLSEECTTH

Uniprot

H9JGC5   A0A2A4IU34   S4PZS8   A0A194RIN7   A0A194QGI6   A0A212FKI4   + More
A0A067RPP6   A0A0T6B7Z2   A0A154P8A7   A0A088AKZ8   A0A2A3E1G0   A0A195DRH8   A0A195BVY8   A0A158NGC1   A0A195ETC5   A0A151X1R1   A0A151IIM9   F4WZF4   A0A1B6GBU4   A0A1B6GMK4   A0A1B6FSC2   E2CA51   U4USR5  

Pubmed

19121390    23622113    26354079    22118469    24845553    21347285    + More
21719571    20798317    23537049   

EMBL

BABH01002453    NWSH01007855    PCG62784.1    GAIX01001013    JAA91547.1    KQ460154    + More
KPJ17304.1    KQ458880    KPJ04653.1    AGBW02008030    OWR54254.1    KK852498    KDR22595.1    LJIG01009238    KRT83480.1    KQ434827    KZC07574.1    KZ288453    PBC25538.1    KQ980612    KYN15109.1    KQ976398    KYM92799.1    ADTU01001593    KQ981979    KYN31411.1    KQ982585    KYQ54351.1    KQ977474    KYN02517.1    GL888479    EGI60398.1    GECZ01009864    JAS59905.1    GECZ01006104    JAS63665.1    GECZ01016710    JAS53059.1    GL453920    EFN75206.1    KB632433    ERL95563.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000007151    UP000027135    + More
UP000076502    UP000005203    UP000242457    UP000078492    UP000078540    UP000005205    UP000078541    UP000075809    UP000078542    UP000007755    UP000008237    UP000030742   

PRIDE

H9JGC5   

Pfam

PF03828   PAP_assoc        + More
PF00076   RRM_1
PF01909   NTP_transf_2
PF01885   PTS_2-RNA
PF12171   zf-C2H2_jaz

Interpro

IPR002058   PAP_assoc        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR035979   RBD_domain_sf       
IPR002934   Polymerase_NTP_transf_dom       
IPR042080   RNA_2'-PTrans_N       
IPR042081   RNA_2'-PTrans_C       
IPR002745   Ptrans_KptA/Tpt1       
IPR034389   Star-PAP       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR000690   Matrin/U1-C_Znf_C2H2       
IPR022755   Znf_C2H2_jaz       

SUPFAM

SSF54928   SSF54928        + More
SSF57667   SSF57667       

Gene 3D

3.30.70.330     1.10.10.970     3.20.170.30    

ProteinModelPortal

H9JGC5   A0A2A4IU34   S4PZS8   A0A194RIN7   A0A194QGI6   A0A212FKI4   + More
A0A067RPP6   A0A0T6B7Z2   A0A154P8A7   A0A088AKZ8   A0A2A3E1G0   A0A195DRH8   A0A195BVY8   A0A158NGC1   A0A195ETC5   A0A151X1R1   A0A151IIM9   F4WZF4   A0A1B6GBU4   A0A1B6GMK4   A0A1B6FSC2   E2CA51   U4USR5  

PDB

5WU6     E-value=3.67766e-26,     Score=297

KEGG

101736670    K18709 speckle targeted PIP5K1A-regulated poly(A) polymerase [EC:2.7.7.19 2.7.7.52] | (RefSeq) speck

GO

GO:0003723   GO:0016779   GO:0006388   GO:0016772   GO:0050265   GO:0003730   GO:0005634   GO:0006378   GO:0008270   GO:0003676   GO:0000166   GO:0046961   GO:0015992   GO:0005524   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR12271:SF11  

Length:

806

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0892299999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00333

outside

1  -  806

 

 

Pi

180.858521

Theta

182.442286

Tajima's D

0.104799

CLR

0.442965

CSRT

0.40157992100395

Interpretation

Uncertain