Gene

KWMTBOMO11087  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008568

Annotation

PREDICTED:_visual_system_homeobox_2-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(+):12583406-12661690      View in EpiBrowser

Transcription factor

Homeobox

Location in the cell

Nuclear   Reliability : 4.371

CDS

ATGCGCTTACAAAAGTACACCAATATCAATGAGTTTATTGATTTTGATATTTGTGATTTAACACAACGCTATTTTCTTGTTACAGGCGTGTCTTCTTTGGAAGCAGCAAAAGACTTCACGGTAGACGGCCTCACAGGATACAATGGAAAGAAGAAGAAGAAAAAACGTAGACATAGGACGATCTTCACCTCCTATCAGCTGGACGAACTGGAGAAGGCCTTCAAAGATGCTCACTACCCCGACGTGTACGCAAGAGAAATGCTGTCCTTGAAAACCGACCTGCCCGAAGATCGGATCCAGGTCTGGTTCCAAAACCGTCGAGCGAAATGGCGCAAAACTGAGAAGTGCTGGGGTCGGTCCACCATAATGGCCGAATACGGGCTGTACGGCGCGATGGTGCGACATTCCCTCCCGCTACCGGAGACCATCCTCAACAGCGCCAAGGAAAACGATTCGGTCGCGCCGTGGCTGCTCGGAATGCACCGAAAATCGATAGAGGCAGCTCGTCACCTCAAGGAATCAGGGTCGGAACGGGAGGGATCTGAACCGGAAGCGGACAGGGCAACGTCTACTTCTCCACATCCTCACGAAAATCAGGCGCAGAGCTCTCCAGCGAGCAGTACTACTGCATCGTCGTCGGCTAGGGGTCGAGCGTCGCCCGACCCAGCGCGCGACGACCCCGACGCCTTCCGCAACAACAGCATCGCCTGTCTGCGGGCCAAGGCGCAAGAGCACCAGGCTAGAATACTCTCCAATAACTTACTTATGCAGGTCCGTGGCCTAACTCGCACTCCGATCAGCACTCCTAATGCGGAAGACGACGGTCCCGGAGACATAGACGTGGGCACGGAGCAACCACTGGATACCACGACCCATCCCGCGCATTTGTATTGA

Protein

MRLQKYTNINEFIDFDICDLTQRYFLVTGVSSLEAAKDFTVDGLTGYNGKKKKKKRRHRTIFTSYQLDELEKAFKDAHYPDVYAREMLSLKTDLPEDRIQVWFQNRRAKWRKTEKCWGRSTIMAEYGLYGAMVRHSLPLPETILNSAKENDSVAPWLLGMHRKSIEAARHLKESGSEREGSEPEADRATSTSPHPHENQAQSSPASSTTASSSARGRASPDPARDDPDAFRNNSIACLRAKAQEHQARILSNNLLMQVRGLTRTPISTPNAEDDGPGDIDVGTEQPLDTTTHPAHLY

Similarity

Belongs to the paired homeobox family.

Uniprot

A0A2A4JHW9   A0A3S2NGA6   K7J3N7   A0A2A3EQS2   A0A069DSN7   A0A0N0BE59   + More
A0A0L7RAS2   A0A087ZUS2   A0A0V0G8Z8   A0A026W4E5   A0A3L8E5A0   A0A154P2J4   A0A195CC28   A0A3S4FJ10   A0A151WUZ2   A0A151IZX3   A0A195FD25   A0A195BY85   A0A0K2TUC3   A0A1C3H853   A0A1U7R8P1   A0A151NKB7   V8PEC8  

Pubmed

20075255    26334808    24508170    30249741    22293439    24297900    + More

EMBL

NWSH01001325    PCG71685.1    RSAL01000118    RVE46797.1    KZ288193    PBC34115.1    + More
GBGD01001954    JAC86935.1    KQ435845    KOX71172.1    KQ414618    KOC67836.1    GECL01001537    JAP04587.1    KK107432    EZA50888.1    QOIP01000001    RLU27078.1    KQ434804    KZC06053.1    KQ978068    KYM97633.1    LR129957    VDH80599.1    KQ982730    KYQ51521.1    KQ980665    KYN14645.1    KQ981677    KYN38102.1    KQ976394    KYM93265.1    HACA01012282    CDW29643.1    LT560253    SAP35452.1    AKHW03002792    KYO37210.1    AZIM01000236    ETE72353.1   

Proteomes

UP000218220    UP000283053    UP000002358    UP000242457    UP000053105    UP000053825    + More
UP000005203    UP000053097    UP000279307    UP000076502    UP000078542    UP000075809    UP000078492    UP000078541    UP000078540    UP000189705    UP000050525   

Pfam

PF03826   OAR        + More
PF00046   Homeodomain

Interpro

IPR023339   CVC        + More
IPR009057   Homeobox-like_sf       
IPR003654   OAR_dom       
IPR017970   Homeobox_CS       
IPR001356   Homeobox_dom       

SUPFAM

SSF46689   SSF46689       

CDD

cd00086  homeodomain

ProteinModelPortal

A0A2A4JHW9   A0A3S2NGA6   K7J3N7   A0A2A3EQS2   A0A069DSN7   A0A0N0BE59   + More
A0A0L7RAS2   A0A087ZUS2   A0A0V0G8Z8   A0A026W4E5   A0A3L8E5A0   A0A154P2J4   A0A195CC28   A0A3S4FJ10   A0A151WUZ2   A0A151IZX3   A0A195FD25   A0A195BY85   A0A0K2TUC3   A0A1C3H853   A0A1U7R8P1   A0A151NKB7   V8PEC8  

PDB

2M0C     E-value=1.55631e-19,     Score=235

KEGG

101740372    K09336 visual system homeobox protein 2 | (RefSeq) visual system homeobox 2-like

GO

GO:0043565   GO:0006355   GO:0007275   GO:0005634   GO:0003677   GO:0000155   GO:0000160   GO:0005216   GO:0006811   GO:0005622   GO:0006810   GO:0003824  

Subcellular location

Nucleus  

Length:

297

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.533699999999999

Exp number, first 60 AAs:

0.01011

Total prob of N-in:

0.16482

outside

1  -  297

 

 

Pi

193.688833

Theta

155.630041

Tajima's D

0.271749

CLR

0.659648

CSRT

0.449327533623319

Interpretation

Uncertain