Gene

KWMTBOMO11073

Pre Gene Modal

BGIBMGA008557

Annotation

PREDICTED:_probable_4-coumarate--CoA_ligase_3_[Amyelois_transitella]

Location

Bomo_Chr18(+):12191277-12208647      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.931 Mitochondrial   Reliability : 1.446

CDS

ATGTTCTCTAAAATTATTCGTCGTAGTTTCTGTGTTGCCAGAAAAAATGTATGGACTCCCGATAATGTGGTGTATTCTCCCTATCGGGATATAGAAGTGCCCGATACTACAATATACGAGTATGTGTTTAGAAATCTGGATAAATGGGCAACGAAAACAGCTGTGGTATGTGGCGTTACAAACCGCGCCTACACTTTTGAAGAACTTTACAAATGTTCGCGTACTCTTGGTGCTAATCTGCGAAAGAAATTCAAATTAAGAGACGGTGACGTCATCGCAATACTTCTACCGAACGTTCCAGAGTATCCTGTGTCCGTGTTTGGCGTACTAGCGGCTGGGGGTATAGTCACAACTATAAACCCAATTTACACGCCATACGAAATACAACGACAGCTGGACACATCGGGCGCTAAGATTGTGATAACCCTGCCAGATTTGGTTCCCAACGTCAAAAAATCTTTAGAACTATCAAAGAAGGATCTGAAAATCATTGCTGTGAATATCGACAGTCAACAGCCAGAAGGGACGATATCATTTAAAGAACTGACAGAGGATAAGCACATTGATTTTGAAATTCTAAAGGAGGTTAAAAGGGTGTCGGATGATATCGCTTTTATGGTTTATTCAAGTGGCACGACCGGACTCCCTAAGGCAGTTGAATTAACGCACACCAATAAAGTTGCTAATTTTTCGCAACAGGACACCGAATTGAGGCAATATGAATATACGACAGAAACAAACCAGGATTCGACGCTGGGCCTCCTACCGTTGTTCCACACTTACGGCCTTTCGGTTGTGATGATGCACAAGCTATCGGTCGGATTGAAACTGGTAACACTTCCGAGTTTCCAACCACGGACCTTTCTGGATGCGCTGCTGAAACACCCGATGGAATTGATGTACCTTGCTCCACCTACTATTTTGTTCCTCGGCGCGCATCCTGCAGCTACGAGGGATCATTTAAAGCATTTGAAAGTGGTAACTTCGGGCGCCGCGCCACTACCTGAAGCAGATATCCACAAATTTTTAGAGAAAGCGCGGCCCGATATCCAGTTCAACCAAGCCTATGGAATGACTGAAGCCAGTCCCCTGGTGACGTTAGGATCGAGAGACTTCGAGAGAAACTACTCTGATGTGGGTTGTGCTGTGCCGAATGTTCAGCTCAGAGTCGTCGATGCAGACATGAAGAATTTAGGCCCGGATGAGGTCGGCGAGCTGCCCATTAAGGGCCCGAACGTCATGCGAGGGTACAAAGACAATCCAAAAGCAAACGAGGAGGTGTTTGTTGACGGACGCTGGTACCGGAGCGGAGACCTCGCCCGCATTAACAAAGACGGCATTGTTACCATTGTCGACAGACTCAAGGAACTTATTAAGGTGAAAGGTTACCAGGTCGCTCCTGCTGAGTTAGAAGCAGTCCTCAAAGAGCATGCTGACGTGTACGACGCGGCCGTTGTAGGAGTACCAGATCCAATCACGGGAGAGTCTCCCAGGGCTTTCGTGGTTCTCAACAAGGATTCTAAAGTGGACGAAAAACTCATTCTAGATTATGTTAGTGAGAAAGTGGCCGCTTTTAAAAGATTAAAAAGCGTTACGTTCGTTGACAGTATACCAAAAAATCCATCAGGGAAAATACTGAGGAAAGTCTTGAAGGAACAATATTGTTGA

Protein

MFSKIIRRSFCVARKNVWTPDNVVYSPYRDIEVPDTTIYEYVFRNLDKWATKTAVVCGVTNRAYTFEELYKCSRTLGANLRKKFKLRDGDVIAILLPNVPEYPVSVFGVLAAGGIVTTINPIYTPYEIQRQLDTSGAKIVITLPDLVPNVKKSLELSKKDLKIIAVNIDSQQPEGTISFKELTEDKHIDFEILKEVKRVSDDIAFMVYSSGTTGLPKAVELTHTNKVANFSQQDTELRQYEYTTETNQDSTLGLLPLFHTYGLSVVMMHKLSVGLKLVTLPSFQPRTFLDALLKHPMELMYLAPPTILFLGAHPAATRDHLKHLKVVTSGAAPLPEADIHKFLEKARPDIQFNQAYGMTEASPLVTLGSRDFERNYSDVGCAVPNVQLRVVDADMKNLGPDEVGELPIKGPNVMRGYKDNPKANEEVFVDGRWYRSGDLARINKDGIVTIVDRLKELIKVKGYQVAPAELEAVLKEHADVYDAAVVGVPDPITGESPRAFVVLNKDSKVDEKLILDYVSEKVAAFKRLKSVTFVDSIPKNPSGKILRKVLKEQYC

Uniprot

H9JGB0   A0A2H1V6K9   A0A2A4K3A4   A0A194RIT5   A0A3S2NX79   H9JGA9   + More
A0A2A4K2X8   A0A2H1WC02   A0A194RII1   A0A2H1V6M1   A0A194QI42   A0A2A4IY84   A0A194QGE2   A0A3S2LHM1   A0A0L7KS00   A0A212ELD3   Q17P68   A0A2H1VTI1   A0A194QMA1   A0A2M4A7J6   A0A2A4K2K9   A0A2M4A9F3   A0A182FQZ2   A0A182JN78   A0A2M3ZGD1   B0W6R4   A0A182Y402   A0A1Q3FJV1   A0A182R455   A0A1Q3FKE9   A0A1Q3FJY7   A0A2M4BHT0   W5JKB2   A0A2M4BIF8   A0A182K9W2   A0A182NR50   A0A182LUB0   A0A182UUK9   D2A1H8   Q7QCM8   A0A182TPK3   A0A182LE43   A0A182HS75   A0A182PUZ1   A0A182XAD5   Q9VXZ8   A0A182VZU2   B4PW91   A0A182QDT5   A0A182H784   B3MXL5   A0A1L8DYU5   A0A1L8DYX6   A0A1L8DYT3   A0A1B0GLA5   B3NUW6   B4R4X2   A0A2S2QAM9   A0A1W4VFX1   Q29IR9   J9JLU8   A0A1B0AN08   U5EJG4   A0A1A9XA33   A0A2H8TZM7   B4MTA9   A0A0L0CJM9   A0A3B0JZ59   B4L257   B4JL04   V5GTJ7   A0A2M4BKZ5   A0A1I8N0U5   T1PER9   A0A0K8SSC0   A0A146L4D3   A0A1A9VWU1   A0A0M5J603   W8AQQ0   A0A1B0A150   R4IJP7   A0A2J7QWJ4   A0A1J1IGT1   D2A1H7   A0A224XLB6   A0A069DZA1   A0A0V0G4H2   E0VIQ7   A0A2J7QAA1   B4M8E6   A0A1A9W8T0   B4IJ84   A0A069DUU3   A0A0A1WUA9   A0A2J7RB11   A0A1I8QB84   A0A2J7RB04   A0A146L3Y8   U4UPK1   A0A0N7Z8U2  

Pubmed

19121390    26354079    26227816    22118469    17510324    25244985    + More
20920257    23761445    18362917    19820115    12364791    14747013    17210077    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    17550304    26483478    15632085    26108605    25315136    26823975    24495485    23499946    26334808    20566863    25830018    23537049    27129103   

EMBL

BABH01002396    ODYU01000947    SOQ36468.1    NWSH01000221    PCG78253.1    KQ460154    + More
KPJ17250.1    RSAL01000117    RVE46830.1    BABH01002393    BABH01002394    PCG78254.1    ODYU01007521    SOQ50362.1    KPJ17249.1    SOQ36467.1    KQ458880    KPJ04600.1    NWSH01005551    PCG64130.1    KPJ04603.1    RVE46823.1    JTDY01006359    KOB66072.1    AGBW02014086    OWR42277.1    CH477193    EAT48565.1    ODYU01004348    SOQ44127.1    KPJ04601.1    GGFK01003456    MBW36777.1    PCG78256.1    GGFK01004041    MBW37362.1    GGFM01006831    MBW27582.1    DS231849    EDS36895.1    GFDL01007188    JAV27857.1    GFDL01007082    JAV27963.1    GFDL01007104    JAV27941.1    GGFJ01003456    MBW52597.1    ADMH02001265    ETN63325.1    GGFJ01003457    MBW52598.1    AXCM01000143    KQ971338    EFA01537.1    AAAB01008859    EAA08143.4    APCN01000246    AF145610    AE014298    BT120049    AAD38585.1    AAF48408.2    ADA53588.1    ADV37672.1    AFH07387.1    AHN59727.1    CM000162    EDX01722.1    AXCN02001476    JXUM01027982    JXUM01027983    JXUM01027984    KQ560806    KXJ80822.1    CH902630    EDV38480.2    GFDF01002456    JAV11628.1    GFDF01002455    JAV11629.1    GFDF01002454    JAV11630.1    AJWK01034692    AJWK01034693    CH954180    EDV47064.1    CM000366    EDX17929.1    GGMS01005387    MBY74590.1    CH379063    EAL32584.2    ABLF02036883    JXJN01000685    GANO01002244    JAB57627.1    GFXV01007406    MBW19211.1    CH963851    EDW75348.2    JRES01000394    KNC31694.1    OUUW01000003    SPP78666.1    CH933810    EDW06797.2    CH916370    EDW00257.1    GALX01004903    JAB63563.1    GGFJ01004327    MBW53468.1    KA647194    AFP61823.1    GBRD01010094    JAG55730.1    GDHC01018826    GDHC01015238    JAP99802.1    JAQ03391.1    CP012528    ALC48836.1    GAMC01015390    JAB91165.1    CCAG010022230    JX291124    AFQ01093.1    NEVH01009765    PNF32957.1    CVRI01000047    CRK97641.1    EFA01538.1    GFTR01007206    JAW09220.1    GBGD01001000    JAC87889.1    GECL01003540    JAP02584.1    DS235201    EEB13263.1    NEVH01016331    PNF25515.1    CH940653    EDW62422.2    CH480847    EDW51063.1    GBGD01001041    JAC87848.1    GBXI01011870    GBXI01007925    JAD02422.1    JAD06367.1    NEVH01006564    PNF38011.1    PNF38010.1    GDHC01017139    JAQ01490.1    KB632390    ERL94408.1    GDKW01002395    JAI54200.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000283053    UP000053268    UP000037510    + More
UP000007151    UP000008820    UP000069272    UP000075880    UP000002320    UP000076408    UP000075900    UP000000673    UP000075881    UP000075884    UP000075883    UP000075903    UP000007266    UP000007062    UP000075902    UP000075882    UP000075840    UP000075885    UP000076407    UP000000803    UP000075920    UP000002282    UP000075886    UP000069940    UP000249989    UP000007801    UP000092461    UP000008711    UP000000304    UP000192221    UP000001819    UP000007819    UP000092460    UP000092443    UP000007798    UP000037069    UP000268350    UP000009192    UP000001070    UP000095301    UP000078200    UP000092553    UP000092445    UP000092444    UP000235965    UP000183832    UP000009046    UP000008792    UP000091820    UP000001292    UP000095300    UP000030742   

PRIDE

H9JGB0    H9JGA9    Q9VXZ8   

Pfam

PF13193   AMP-binding_C        + More
PF00501   AMP-binding

Interpro

IPR000873   AMP-dep_Synth/Lig        + More
IPR042099   AMP-dep_Synthh-like_sf       
IPR020845   AMP-binding_CS       
IPR025110   AMP-bd_C       

Gene 3D

3.40.50.12780    

ProteinModelPortal

H9JGB0   A0A2H1V6K9   A0A2A4K3A4   A0A194RIT5   A0A3S2NX79   H9JGA9   + More
A0A2A4K2X8   A0A2H1WC02   A0A194RII1   A0A2H1V6M1   A0A194QI42   A0A2A4IY84   A0A194QGE2   A0A3S2LHM1   A0A0L7KS00   A0A212ELD3   Q17P68   A0A2H1VTI1   A0A194QMA1   A0A2M4A7J6   A0A2A4K2K9   A0A2M4A9F3   A0A182FQZ2   A0A182JN78   A0A2M3ZGD1   B0W6R4   A0A182Y402   A0A1Q3FJV1   A0A182R455   A0A1Q3FKE9   A0A1Q3FJY7   A0A2M4BHT0   W5JKB2   A0A2M4BIF8   A0A182K9W2   A0A182NR50   A0A182LUB0   A0A182UUK9   D2A1H8   Q7QCM8   A0A182TPK3   A0A182LE43   A0A182HS75   A0A182PUZ1   A0A182XAD5   Q9VXZ8   A0A182VZU2   B4PW91   A0A182QDT5   A0A182H784   B3MXL5   A0A1L8DYU5   A0A1L8DYX6   A0A1L8DYT3   A0A1B0GLA5   B3NUW6   B4R4X2   A0A2S2QAM9   A0A1W4VFX1   Q29IR9   J9JLU8   A0A1B0AN08   U5EJG4   A0A1A9XA33   A0A2H8TZM7   B4MTA9   A0A0L0CJM9   A0A3B0JZ59   B4L257   B4JL04   V5GTJ7   A0A2M4BKZ5   A0A1I8N0U5   T1PER9   A0A0K8SSC0   A0A146L4D3   A0A1A9VWU1   A0A0M5J603   W8AQQ0   A0A1B0A150   R4IJP7   A0A2J7QWJ4   A0A1J1IGT1   D2A1H7   A0A224XLB6   A0A069DZA1   A0A0V0G4H2   E0VIQ7   A0A2J7QAA1   B4M8E6   A0A1A9W8T0   B4IJ84   A0A069DUU3   A0A0A1WUA9   A0A2J7RB11   A0A1I8QB84   A0A2J7RB04   A0A146L3Y8   U4UPK1   A0A0N7Z8U2  

PDB

3TSY     E-value=2.1227e-87,     Score=823

KEGG

101747180    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0016874   GO:0001676   GO:0019433   GO:0005739   GO:0046949   GO:0004467   GO:0047077   GO:0016021   GO:0008152   GO:0043565   GO:0003676   GO:0005543   GO:0042626   GO:0016887   GO:0005622   GO:0006810  

Length:

555

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.71483

Exp number, first 60 AAs:

0.00085

Total prob of N-in:

0.10503

outside

1  -  555

 

 

Pi

28.405898

Theta

202.250976

Tajima's D

0.676785

CLR

1.156178

CSRT

0.56137193140343

Interpretation

Uncertain