Gene

KWMTBOMO11072  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008556

Annotation

putative_4-coumarate--CoA_ligase_3_[Papilio_xuthus]

Location

Bomo_Chr18(+):12173167-12187908      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.505 Mitochondrial   Reliability : 1.253

CDS

ATGTTGTCGAAGAATTTCATAAAAAGATGGGTTCAAAGTTCGAAGTTAATTCGTAAGCAAAGCGTTTGGAGTGCTGATAATGTGATAAGTTCTCCGTATAGAGACGTGGAAATACCTAACAGTACGCTATACGAATATGTATGGAAGAACTTGGAGAGATGGCCCGAGAGGACTATGGCGGTCTGCGCCACCACAGGCCGTGGGTACACATACGAGCAAGGTTTCAAACTTTCTAACACGTTCGCAGCAAACCTTAGAAGGAAGTTCCAAGTCCGCGATGGAGACGTCGTGGCTGTGATGCTACCAAACATCCCAGATTTTCCCCTTGTGACCATGGGAATATTAGAAGCTGGAGGCATTATAACATCTATAAACCCGATTTATACAGCGCATGAAGTCCAAAGGCAACTTGTATTATCCGAAGCCAAAATCGTGGTTACATTGCCGGAGACAGTGGCCATTATAAAGGAGGCTTGTAAGATGGCCAAAATAGATCTTCCAATCATAACCATAAAAACAAATGGAGAGGTGACACAGGAAGGAACAGTACTCTTCAACGATTTGACGGAAGACGTACACGTGGACAAATCCTGTTTGAGGGAGGTCAGGAGGAGTGCAAGCGACGTCTGCTTCCTTCCGTACTCGAGTGGAACAACCGGCCTTCCAAAAGGCGTCGAACTTACTCACAGGAATTTGATTGCAAATTGTGAACAGGTTAATGAACCGTTGATCGCGTGCCATAATGAGACAACTGAAACACATCAGGACAAGGTGCTGGTCGTTCTACCTCTGTTCCACATCTACTCGGCATCAGTGCTGATGTTCCACAAGATGGCCCAAGGAGCGAAATTGGTGACCGTCAAGAAGTTCACTCCTGAAGACTACTTCAAAGCAATCGAAGGCTACAAAACCAATCTGTTGTTTGTTGCTCCTCCGTTAATGTTTCTGATGGCATCGCACCCGGCAGCCACGGAGAAGTCTCTTCGGTACATCGAGGTGTTGGTGTCGGGCGCCGCGCCTCTCTCCGCCTCCGACACTCACAGATTCTTTGAGAAAGCTAACAAAAAAATTGATTTCCGTCAAGGGTACGGGTTGACGGAAACATCGCCTACGATCTCATTGACTCCTAAAGGCTGCAAGAAGAACTACGATGCGACTGGACCTCCCATACCCAGCACTCGGCTCAGGATCGTCGACAACGACCTCAATAATATCGGGCCTAATCAGACTGGCGAGATCCTGGTGCACGGCCCGCAAGTGATGCGAGGATACAAGAATAACCCGCGAGCCAACGAGGAGGTGTTCACCGCGGACGGCTGGTTCAGGACCGGAGACCTGGGACACGTGGACGAGGAGGGAACGCTGACCATCGCTGATCGACTCAAGGAACTTATCAAGGTCAAAGGATTCCAAGTGCCACCAGCCGAGTTGGAGGCCGTCCTTCGTTCTCATCCGTCCGTCAACGACGCTGCGGTCATAGGCGTCCCGCATCCAACCAAAGGGGAGACCCCGAAAGCATTTATATCCCTAAAACCAGGGTTCAACGATAACTCTGAAGAACTGAAAGACTACGTCCGAGAGCGGGTAGCGGCTTACAAGAGAATAGAAGACTTTAAGTTTGTAGATAGCATCCCTAAAAGTCCTTCGGGGAAGATACTGAGGAAGGTTCTGAAGGAGCAATATTGCTGCTAG

Protein

MLSKNFIKRWVQSSKLIRKQSVWSADNVISSPYRDVEIPNSTLYEYVWKNLERWPERTMAVCATTGRGYTYEQGFKLSNTFAANLRRKFQVRDGDVVAVMLPNIPDFPLVTMGILEAGGIITSINPIYTAHEVQRQLVLSEAKIVVTLPETVAIIKEACKMAKIDLPIITIKTNGEVTQEGTVLFNDLTEDVHVDKSCLREVRRSASDVCFLPYSSGTTGLPKGVELTHRNLIANCEQVNEPLIACHNETTETHQDKVLVVLPLFHIYSASVLMFHKMAQGAKLVTVKKFTPEDYFKAIEGYKTNLLFVAPPLMFLMASHPAATEKSLRYIEVLVSGAAPLSASDTHRFFEKANKKIDFRQGYGLTETSPTISLTPKGCKKNYDATGPPIPSTRLRIVDNDLNNIGPNQTGEILVHGPQVMRGYKNNPRANEEVFTADGWFRTGDLGHVDEEGTLTIADRLKELIKVKGFQVPPAELEAVLRSHPSVNDAAVIGVPHPTKGETPKAFISLKPGFNDNSEELKDYVRERVAAYKRIEDFKFVDSIPKSPSGKILRKVLKEQYCC

Uniprot

H9JGA9   A0A2A4K2X8   A0A2H1V6M1   A0A194QI42   A0A194RII1   A0A212ELD3   + More
A0A2H1V6K9   A0A2A4K3A4   A0A3S2NX79   A0A3S2LHM1   A0A2H1WC02   A0A194QGE2   A0A194RIT5   H9JGB0   A0A2A4IY84   A0A2A4K2K9   A0A2M4A7J6   A0A2M4A9F3   A0A2H1VTI1   D2A1H8   A0A182FQZ2   A0A2M4BHT0   A0A2M4BIF8   A0A2M3ZGD1   W5JKB2   A0A182R455   Q17P68   A0A182K9W2   A0A1Q3FJV1   A0A182JN78   A0A182LUB0   A0A1Q3FKE9   A0A1Q3FJY7   A0A182Y402   D2A1H7   A0A182NR50   A0A182UUK9   Q29IR9   Q7QCM8   A0A182TPK3   A0A182LE43   A0A182HS75   B0W6R4   A0A182VZU2   A0A182PUZ1   T1PER9   A0A0L0CJM9   A0A182XAD5   A0A1I8N0U5   A0A1L8DYU5   A0A1L8DYX6   A0A1L8DYT3   U5EJG4   A0A182QDT5   A0A1B0AN08   A0A1A9VWU1   R4IJP7   A0A1B0A150   A0A1A9XA33   B3NUW6   A0A3B0JZ59   A0A1B0GLA5   B3MXL5   Q9VXZ8   B4MTA9   B4PW91   B4L257   A0A1I8QB84   B4R4X2   A0A2M4BKZ5   B4JL04   V5GTJ7   B4M8E6   A0A1W4VFX1   J9JLU8   A0A182H784   A0A2J7QWJ4   A0A0M5J603   A0A1A9W8T0   A0A0A1WUA9   A0A2S2QAM9   A0A2P8XJW4   A0A2J7RB04   A0A2J7RB11   A0A2A4K1W8   W8AQQ0   A0A034VMV0   A0A1J1IG04   B4HAK4   A0A224XLB6   A0A1J1IGT1   A0A069DZA1   A0A2J7QAA1   D2A3J8   U4UPK1   A0A0V0G4H2   A0A2H8TZM7   A0A0K8SSC0   A0A0P4VJM5   A0A146L4D3  

Pubmed

19121390    26354079    22118469    18362917    19820115    20920257    + More
23761445    17510324    25244985    15632085    17994087    12364791    14747013    17210077    20966253    26108605    25315136    23499946    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    26483478    25830018    29403074    24495485    25348373    26334808    23537049    27129103    26823975   

EMBL

BABH01002393    BABH01002394    NWSH01000221    PCG78254.1    ODYU01000947    SOQ36467.1    + More
KQ458880    KPJ04600.1    KQ460154    KPJ17249.1    AGBW02014086    OWR42277.1    SOQ36468.1    PCG78253.1    RSAL01000117    RVE46830.1    RVE46823.1    ODYU01007521    SOQ50362.1    KPJ04603.1    KPJ17250.1    BABH01002396    NWSH01005551    PCG64130.1    PCG78256.1    GGFK01003456    MBW36777.1    GGFK01004041    MBW37362.1    ODYU01004348    SOQ44127.1    KQ971338    EFA01537.1    GGFJ01003456    MBW52597.1    GGFJ01003457    MBW52598.1    GGFM01006831    MBW27582.1    ADMH02001265    ETN63325.1    CH477193    EAT48565.1    GFDL01007188    JAV27857.1    AXCM01000143    GFDL01007082    JAV27963.1    GFDL01007104    JAV27941.1    EFA01538.1    CH379063    EAL32584.2    AAAB01008859    EAA08143.4    APCN01000246    DS231849    EDS36895.1    KA647194    AFP61823.1    JRES01000394    KNC31694.1    GFDF01002456    JAV11628.1    GFDF01002455    JAV11629.1    GFDF01002454    JAV11630.1    GANO01002244    JAB57627.1    AXCN02001476    JXJN01000685    CCAG010022230    JX291124    AFQ01093.1    CH954180    EDV47064.1    OUUW01000003    SPP78666.1    AJWK01034692    AJWK01034693    CH902630    EDV38480.2    AF145610    AE014298    BT120049    AAD38585.1    AAF48408.2    ADA53588.1    ADV37672.1    AFH07387.1    AHN59727.1    CH963851    EDW75348.2    CM000162    EDX01722.1    CH933810    EDW06797.2    CM000366    EDX17929.1    GGFJ01004327    MBW53468.1    CH916370    EDW00257.1    GALX01004903    JAB63563.1    CH940653    EDW62422.2    ABLF02036883    JXUM01027982    JXUM01027983    JXUM01027984    KQ560806    KXJ80822.1    NEVH01009765    PNF32957.1    CP012528    ALC48836.1    GBXI01011870    GBXI01007925    JAD02422.1    JAD06367.1    GGMS01005387    MBY74590.1    PYGN01001893    PSN32296.1    NEVH01006564    PNF38010.1    PNF38011.1    PCG78255.1    GAMC01015390    JAB91165.1    GAKP01015174    GAKP01015173    JAC43779.1    CVRI01000048    CRK98690.1    CH479242    EDW37615.1    GFTR01007206    JAW09220.1    CVRI01000047    CRK97641.1    GBGD01001000    JAC87889.1    NEVH01016331    PNF25515.1    EFA01896.2    KB632390    ERL94408.1    GECL01003540    JAP02584.1    GFXV01007406    MBW19211.1    GBRD01010094    JAG55730.1    GDKW01002178    JAI54417.1    GDHC01018826    GDHC01015238    JAP99802.1    JAQ03391.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000283053    + More
UP000007266    UP000069272    UP000000673    UP000075900    UP000008820    UP000075881    UP000075880    UP000075883    UP000076408    UP000075884    UP000075903    UP000001819    UP000007062    UP000075902    UP000075882    UP000075840    UP000002320    UP000075920    UP000075885    UP000037069    UP000076407    UP000095301    UP000075886    UP000092460    UP000078200    UP000092444    UP000092445    UP000092443    UP000008711    UP000268350    UP000092461    UP000007801    UP000000803    UP000007798    UP000002282    UP000009192    UP000095300    UP000000304    UP000001070    UP000008792    UP000192221    UP000007819    UP000069940    UP000249989    UP000235965    UP000092553    UP000091820    UP000245037    UP000183832    UP000008744    UP000030742   

PRIDE

H9JGA9    H9JGB0    Q9VXZ8   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR025110   AMP-bd_C        + More
IPR020845   AMP-binding_CS       
IPR000873   AMP-dep_Synth/Lig       
IPR042099   AMP-dep_Synthh-like_sf       

Gene 3D

3.40.50.12780    

ProteinModelPortal

H9JGA9   A0A2A4K2X8   A0A2H1V6M1   A0A194QI42   A0A194RII1   A0A212ELD3   + More
A0A2H1V6K9   A0A2A4K3A4   A0A3S2NX79   A0A3S2LHM1   A0A2H1WC02   A0A194QGE2   A0A194RIT5   H9JGB0   A0A2A4IY84   A0A2A4K2K9   A0A2M4A7J6   A0A2M4A9F3   A0A2H1VTI1   D2A1H8   A0A182FQZ2   A0A2M4BHT0   A0A2M4BIF8   A0A2M3ZGD1   W5JKB2   A0A182R455   Q17P68   A0A182K9W2   A0A1Q3FJV1   A0A182JN78   A0A182LUB0   A0A1Q3FKE9   A0A1Q3FJY7   A0A182Y402   D2A1H7   A0A182NR50   A0A182UUK9   Q29IR9   Q7QCM8   A0A182TPK3   A0A182LE43   A0A182HS75   B0W6R4   A0A182VZU2   A0A182PUZ1   T1PER9   A0A0L0CJM9   A0A182XAD5   A0A1I8N0U5   A0A1L8DYU5   A0A1L8DYX6   A0A1L8DYT3   U5EJG4   A0A182QDT5   A0A1B0AN08   A0A1A9VWU1   R4IJP7   A0A1B0A150   A0A1A9XA33   B3NUW6   A0A3B0JZ59   A0A1B0GLA5   B3MXL5   Q9VXZ8   B4MTA9   B4PW91   B4L257   A0A1I8QB84   B4R4X2   A0A2M4BKZ5   B4JL04   V5GTJ7   B4M8E6   A0A1W4VFX1   J9JLU8   A0A182H784   A0A2J7QWJ4   A0A0M5J603   A0A1A9W8T0   A0A0A1WUA9   A0A2S2QAM9   A0A2P8XJW4   A0A2J7RB04   A0A2J7RB11   A0A2A4K1W8   W8AQQ0   A0A034VMV0   A0A1J1IG04   B4HAK4   A0A224XLB6   A0A1J1IGT1   A0A069DZA1   A0A2J7QAA1   D2A3J8   U4UPK1   A0A0V0G4H2   A0A2H8TZM7   A0A0K8SSC0   A0A0P4VJM5   A0A146L4D3  

PDB

5U95     E-value=1.991e-82,     Score=780

KEGG

101747041    no KO assigned | (RefSeq) probable 4-coumarate--CoA ligase 3

GO

GO:0003824   GO:0016874   GO:0019433   GO:0005739   GO:0046949   GO:0004467   GO:0001676   GO:0016021   GO:0008152   GO:0043565   GO:0003676   GO:0005543   GO:0042626   GO:0016887   GO:0005622   GO:0006810  

Length:

563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.68992

Exp number, first 60 AAs:

7e-05

Total prob of N-in:

0.06416

outside

1  -  563

 

 

Pi

280.958301

Theta

150.942601

Tajima's D

0.122362

CLR

0.848584

CSRT

0.410929453527324

Interpretation

Uncertain