Gene

KWMTBOMO11071  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA002199

Annotation

PREDICTED:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr18(+):12139757-12165721      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.1

CDS

ATGGCGCGAAAACTTTTAATACGTAAACTAAAAATTGTAAACTTTCAAAGGAGACTGTGCTTAAGTTCTGCGTTTAGGGATTGTGACAAATTTATTGTTTCGTCACCGATTCCCGATATAGTTTTGCCGCAGACAAGATTCATCGACTATTTGTGGAAAGAATCGGGAAGTTACAAAAATCTAATTGCCATCGAAAGTTCGGAAACAAAGAAGACGTACACATACACACAGCTTCAGAGAAACACATCAGCATTTGCCACTTCCCTGCTGAAGAAGTTGAAGTTAAATCAAGGCGATGTGGTCGCGGTAATGCTTCCGAACTGTCCCGAGTTTCCTGTCGTTGCTTTCGGGACAATGCAGGCTGGGTGTATACTGACAACTGTCAATCCTCTTTACAAGGAAGCGGACATCGGTCATCAAGTGGCAATAACTGAACCGAAACTGTTCATCACGGCTGCCGAATGCTACGACAACGTGAGGAAAGCTTTGAAATTCGCTAAAAGCGATGCCAAAATAGTCCTGATCGACGATCAAAGCTCACCGATACCTAGCGGCACAATCAGATATTCCGAATTAGCTGAAAAAGCCGAGATAGATAACGGTGTTTTAGACAAAATCGAAAAGAGTGACGACGATGTTGCGTGCATACCTTTTTCTAGTGGAACTACGGGTATGCCTAAAGGTGTAGAGATCACATATAGGAACCTTATTGCAGGAATGGTCTGTATGCATATGAAAGAAAACTGTTTTCCTCAGTTGGCGACAGGATTATCCAATCAAGACATTGTTCCATGTATCCTCCCTTTCATTCACATATATGGCCTCGTGATAAGTCTAATGGGGCATTTGTCCAAAGGCTGCAAATTGGTCACAATGTCAAAGTTTTCGGCGAATCTCTTTTTCGATGTACTGAAGAACCAAGATGTTAGTTTACTATACATAGTGCCTCCTGTAGCGATATTGTTGGGTAAACATCCAGATGTACAGGCAGAACATTTCCGCAGCGTTCGTAATATAATCTGTGGGGCCGCGCCGTTGGCGGCTTCAGATGTCGACGCCATATTGGAAAAGAGTAAAAAAAACATCGAATTCAATCAAGGTTTCGGAGCTACAGAAACAACGTCACTGGGCACGTCGACCTTCAAAGGCTCCACTAATGTAGACTACTCTGCGTGTGGAATGCCCATGGTCAATTTCAAGCTGAAATTCGCTGACCCTGTAACTGGTGAACCTATACCGATCGGCGAACAAGGCGAAATGTACATGAAGAGTCCTACAGTGATGAAGGGATATCACAAGAACCCTGCTGCGACTAAGGATACAATCACGGAAGACGGATATTTCAAGACCGGTGATCTCGGATATTATAAGCCGGGCGTTGGTCTGTTCATCACCGATCGAATAAAGGAACTCATTAAGGTGAAGGGTATGCAGGTAGCCCCCGCCGAGCTGGAGAGTCTCCTCCGCTCTCACCCGGCCGTGGCCGACGCCGCCGTCATAGGAGTCCCACATGAGTTCTACGGTGAAACGCCTAAAGCGTTCGTCATTCGTAAAAACGGTCACGACATTTCGGAGAAAGAGCTACAAGCCCACGTTGCTAGCAAAGTGGCCGTGTACAAGCAGATAGAGGAGGTGGCTTTTGTTGATGCTATACCAAAGACAGCCTCCGGGAAGATACTGAGGAAGGACTTGAAGAAGATGTATGCGTAG

Protein

MARKLLIRKLKIVNFQRRLCLSSAFRDCDKFIVSSPIPDIVLPQTRFIDYLWKESGSYKNLIAIESSETKKTYTYTQLQRNTSAFATSLLKKLKLNQGDVVAVMLPNCPEFPVVAFGTMQAGCILTTVNPLYKEADIGHQVAITEPKLFITAAECYDNVRKALKFAKSDAKIVLIDDQSSPIPSGTIRYSELAEKAEIDNGVLDKIEKSDDDVACIPFSSGTTGMPKGVEITYRNLIAGMVCMHMKENCFPQLATGLSNQDIVPCILPFIHIYGLVISLMGHLSKGCKLVTMSKFSANLFFDVLKNQDVSLLYIVPPVAILLGKHPDVQAEHFRSVRNIICGAAPLAASDVDAILEKSKKNIEFNQGFGATETTSLGTSTFKGSTNVDYSACGMPMVNFKLKFADPVTGEPIPIGEQGEMYMKSPTVMKGYHKNPAATKDTITEDGYFKTGDLGYYKPGVGLFITDRIKELIKVKGMQVAPAELESLLRSHPAVADAAVIGVPHEFYGETPKAFVIRKNGHDISEKELQAHVASKVAVYKQIEEVAFVDAIPKTASGKILRKDLKKMYA

Uniprot

A0A2A4K1W8   A0A2H1VTM1   A0A194QGQ5   A0A212ELC7   A0A194RHE2   A0A2A4K2X8   + More
A0A2H1V6M1   Q17P68   A0A2H1VTI1   A0A194RII1   A0A1B0GLA5   H9JGA9   A0A182UUK9   Q7QCM8   A0A182LE43   A0A182HS75   A0A182TPK3   A0A182XAD5   A0A212ELD3   A0A2M4A7J6   A0A2M4A9F3   A0A182K9W2   A0A182JN78   A0A194QI42   A0A182Y402   A0A182H784   A0A2M3ZGD1   A0A2H1WC02   A0A182NR50   A0A1L8DYU5   A0A1L8DYT3   A0A1J1IG04   A0A1L8DYX6   A0A182FQZ2   A0A2M4BHT0   A0A182PUZ1   A0A182R455   A0A2M4BIF8   W5JKB2   A0A3S2LHM1   A0A2A4K2K9   A0A2A4K3A4   B0W6R4   A0A1Q3FJV1   A0A182QDT5   A0A1Q3FJY7   A0A1Q3FKE9   A0A182LUB0   U5EJG4   A0A182VZU2   A0A194QGE2   A0A2J7QAA1   A0A2H1V6K9   A0A2J7QWJ4   A0A3S2NX79   A0A2A4IY84   A0A1J1IGT1   J9JLU8   D2A1H8   V5GTJ7   D2A1H7   A0A2J7RB04   A0A2J7RB11   A0A2M4BKZ5   A0A1Y1KHY9   A0A1Y1KEH5   A0A1B0D2R2   A0A195D8N5   A0A2H8TZM7   A0A224XLB6   A0A232EUX9   A0A2J7QAC7   A0A069DZA1   E0VIQ7   A0A194RIT5   A0A158ND07   A0A195D8L9   A0A067R080   H9JGB0   A0A1B6BWV6   A0A0V0G4H2   A0A195D1W7   A0A0K8SSC0   A0A146L4D3   E2BR32   A0A023FBP3   R4WSB9   A0A026WGV0   A0A0N1IT33   A0A0P4VJM5   T1HK11   A0A0C9R6E2   A0A069DUU3   A0A151X4C7   A0A195C543   A0A2J7RAZ7   A0A2P8XJW4   A0A146L3Y8   A0A1I8N0U5   A0A0N7Z8U2  

Pubmed

26354079    22118469    17510324    19121390    12364791    14747013    + More
17210077    20966253    25244985    26483478    20920257    23761445    18362917    19820115    28004739    28648823    26334808    20566863    21347285    24845553    26823975    20798317    25474469    23691247    24508170    30249741    27129103    29403074    25315136   

EMBL

NWSH01000221    PCG78255.1    ODYU01004348    SOQ44128.1    KQ458880    KPJ04599.1    + More
AGBW02014086    OWR42278.1    KQ460154    KPJ17248.1    PCG78254.1    ODYU01000947    SOQ36467.1    CH477193    EAT48565.1    SOQ44127.1    KPJ17249.1    AJWK01034692    AJWK01034693    BABH01002393    BABH01002394    AAAB01008859    EAA08143.4    APCN01000246    OWR42277.1    GGFK01003456    MBW36777.1    GGFK01004041    MBW37362.1    KPJ04600.1    JXUM01027982    JXUM01027983    JXUM01027984    KQ560806    KXJ80822.1    GGFM01006831    MBW27582.1    ODYU01007521    SOQ50362.1    GFDF01002456    JAV11628.1    GFDF01002454    JAV11630.1    CVRI01000048    CRK98690.1    GFDF01002455    JAV11629.1    GGFJ01003456    MBW52597.1    GGFJ01003457    MBW52598.1    ADMH02001265    ETN63325.1    RSAL01000117    RVE46823.1    PCG78256.1    PCG78253.1    DS231849    EDS36895.1    GFDL01007188    JAV27857.1    AXCN02001476    GFDL01007104    JAV27941.1    GFDL01007082    JAV27963.1    AXCM01000143    GANO01002244    JAB57627.1    KPJ04603.1    NEVH01016331    PNF25515.1    SOQ36468.1    NEVH01009765    PNF32957.1    RVE46830.1    NWSH01005551    PCG64130.1    CVRI01000047    CRK97641.1    ABLF02036883    KQ971338    EFA01537.1    GALX01004903    JAB63563.1    EFA01538.1    NEVH01006564    PNF38010.1    PNF38011.1    GGFJ01004327    MBW53468.1    GEZM01085985    JAV59850.1    GEZM01085986    JAV59849.1    AJVK01010763    AJVK01010764    AJVK01010765    AJVK01010766    KQ981135    KYN09238.1    GFXV01007406    MBW19211.1    GFTR01007206    JAW09220.1    NNAY01002073    OXU22159.1    PNF25522.1    GBGD01001000    JAC87889.1    DS235201    EEB13263.1    KPJ17250.1    ADTU01012156    KYN09240.1    KK852804    KDR16255.1    BABH01002396    GEDC01031799    GEDC01005055    JAS05499.1    JAS32243.1    GECL01003540    JAP02584.1    KQ977012    KYN06394.1    GBRD01010094    JAG55730.1    GDHC01018826    GDHC01015238    JAP99802.1    JAQ03391.1    GL449898    EFN81838.1    GBBI01000369    JAC18343.1    AK417597    BAN20812.1    KK107213    QOIP01000007    EZA55292.1    RLU20572.1    KQ435896    KOX69252.1    GDKW01002178    JAI54417.1    ACPB03010633    GBYB01002856    GBYB01011889    JAG72623.1    JAG81656.1    GBGD01001041    JAC87848.1    KQ982548    KYQ55221.1    KQ978251    KYM95989.1    PNF38006.1    PYGN01001893    PSN32296.1    GDHC01017139    JAQ01490.1    GDKW01002395    JAI54200.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000053240    UP000008820    UP000092461    + More
UP000005204    UP000075903    UP000007062    UP000075882    UP000075840    UP000075902    UP000076407    UP000075881    UP000075880    UP000076408    UP000069940    UP000249989    UP000075884    UP000183832    UP000069272    UP000075885    UP000075900    UP000000673    UP000283053    UP000002320    UP000075886    UP000075883    UP000075920    UP000235965    UP000007819    UP000007266    UP000092462    UP000078492    UP000215335    UP000009046    UP000005205    UP000027135    UP000078542    UP000008237    UP000053097    UP000279307    UP000053105    UP000015103    UP000075809    UP000245037    UP000095301   

PRIDE

H9JGA9    H9JGB0   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR042099   AMP-dep_Synthh-like_sf        + More
IPR000873   AMP-dep_Synth/Lig       
IPR020845   AMP-binding_CS       
IPR025110   AMP-bd_C       

Gene 3D

3.40.50.12780    

ProteinModelPortal

A0A2A4K1W8   A0A2H1VTM1   A0A194QGQ5   A0A212ELC7   A0A194RHE2   A0A2A4K2X8   + More
A0A2H1V6M1   Q17P68   A0A2H1VTI1   A0A194RII1   A0A1B0GLA5   H9JGA9   A0A182UUK9   Q7QCM8   A0A182LE43   A0A182HS75   A0A182TPK3   A0A182XAD5   A0A212ELD3   A0A2M4A7J6   A0A2M4A9F3   A0A182K9W2   A0A182JN78   A0A194QI42   A0A182Y402   A0A182H784   A0A2M3ZGD1   A0A2H1WC02   A0A182NR50   A0A1L8DYU5   A0A1L8DYT3   A0A1J1IG04   A0A1L8DYX6   A0A182FQZ2   A0A2M4BHT0   A0A182PUZ1   A0A182R455   A0A2M4BIF8   W5JKB2   A0A3S2LHM1   A0A2A4K2K9   A0A2A4K3A4   B0W6R4   A0A1Q3FJV1   A0A182QDT5   A0A1Q3FJY7   A0A1Q3FKE9   A0A182LUB0   U5EJG4   A0A182VZU2   A0A194QGE2   A0A2J7QAA1   A0A2H1V6K9   A0A2J7QWJ4   A0A3S2NX79   A0A2A4IY84   A0A1J1IGT1   J9JLU8   D2A1H8   V5GTJ7   D2A1H7   A0A2J7RB04   A0A2J7RB11   A0A2M4BKZ5   A0A1Y1KHY9   A0A1Y1KEH5   A0A1B0D2R2   A0A195D8N5   A0A2H8TZM7   A0A224XLB6   A0A232EUX9   A0A2J7QAC7   A0A069DZA1   E0VIQ7   A0A194RIT5   A0A158ND07   A0A195D8L9   A0A067R080   H9JGB0   A0A1B6BWV6   A0A0V0G4H2   A0A195D1W7   A0A0K8SSC0   A0A146L4D3   E2BR32   A0A023FBP3   R4WSB9   A0A026WGV0   A0A0N1IT33   A0A0P4VJM5   T1HK11   A0A0C9R6E2   A0A069DUU3   A0A151X4C7   A0A195C543   A0A2J7RAZ7   A0A2P8XJW4   A0A146L3Y8   A0A1I8N0U5   A0A0N7Z8U2  

PDB

3TSY     E-value=7.4472e-92,     Score=862

KEGG

101739690    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0016874   GO:0047077   GO:0016021   GO:0008152   GO:0043565   GO:0003676   GO:0005543   GO:0042626   GO:0016887   GO:0005622   GO:0006810  

Length:

569

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.71659

Exp number, first 60 AAs:

0.000610000000000001

Total prob of N-in:

0.05014

outside

1  -  569

 

 

Pi

165.850782

Theta

163.9018

Tajima's D

0.230067

CLR

1.523248

CSRT

0.430028498575071

Interpretation

Uncertain