Gene

KWMTBOMO11070  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008555

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_4-coumarate--CoA_ligase_1-like_[Bombyx_mori]

Location

Bomo_Chr18(+):12113367-12133327      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.056

CDS

ATGTCGAATACATTGAGACGTACTGCACAACAATTGTTGAAGACACACAAGTATGCAACTGCAACATCAAGTATAAGGCAAAAAACAGTAGAAAAAAACATTCTGACATCTGTCTACAAGGATATTCCTGTGACAAATATGACTATCAATGATTTTGTTTGGCAAAATTTGGATAGATGGCCCGACAAGACTGCTACAGTATGCGCGCTGACCGGTCACGGGTACACTTACGCCCAAACGCACAGGATGTCGGTAACATTCGCAGCGTCCTTACGATCGAAACTGAAACTGAAGAATGACGACAAAGTGGCGGTTATCTTGCCGAATTTACCAGAATATCCCTGTACATTGCTGGGCATATTGCAGGCTGGCTGTGTTGCCAGCATGATGAACCCAGTTTACACGTCTCATGAATTAAAACGACAATTGGAGTTGATCGATTGTAAAGCTATCGTCAGTTCCAAAATATCGTACGCGAACATAAAACAGGCACTGGACGAGTTGAAAGTCAACGTGCCTATAATACTAGTCGACAACGAGGGTCTGCCCGAGGGCGCGATAAAATTCGCCGAACTAGCCGAAGACTTCAACGTCGACATTGACTGTTTGAAGTCCGTTCAGAGGGGTCCCAAAGACGTCGCGATCCTGCCGTTCTCCAGTGGAACCACGGGCTTCCCCAAGGCCGTGGTTCTCGATCACGGAGGCGTTGTCGCCTTGAACCAAATGATAATAGACCCGGAGATTGTTGTGATAGAAGAGACCACCGCAACACACCAGTCAGTGTTGCCAGCGATCTTGCCGTTTTTCCACATATTCGGTTTCAATTCCCTAATGATGAACCAAATGGCGCAGGGCGTGAAATTAGTCACGATGCCGTATTTCAAACCGGATCTTTTCCTGCAGACCATCGTGAAGTACAAGGCGGAAGTGCTCTTCATTGTTCCGCCGATGGTGGTATTCCTGGGTAAGCATCCGGCGGTTAAACCTGAACATCTGGCCGCCGTCAAGGGCATGATCAGCGGAGCCGCTCCGCTCTCGGCCGCGGATGCTGCGGCTGTATTGGAAAAGAACAAAAACATAATATTCCGGCAAGGTTACGGCCTGACCGAGACCAATGGAGCCGTCACTGTCGGTAGGAATGATGACACGAACCACGCGGCCGTTGGACACGTGCTAGGCAGCTGCGAGGTCAAGGTAGCTGACGTCAACACGCAGGAAGCATTGGGCGCGGGGCAGGAAGGCGAGATCTGGTGTCGCGGCCCAAACCTGATGTCCGGTTATTATCTAGACGAAAAGTCCACCAGGGAGGTCATGACGGAGGATGGCTGGTACAAAACCGGAGACATTGGGAAGTACGACGAGAACAAATATCTGTACGTCACGGATAGACTGAAGGAACTCATCAAGGTCAAAGGTTTCCAAGTACCGCCTGCTGAATTGGAGACCGTCATCAGAACGCACTCCAAGGTTCTAGACTGCGCGGTCCTGGGCATACCGGACCCCGTAACAGGGGAAGTACCGAAGGCCTTTATAGTCCCTCAACAGGGTCAGACCCTCGACGCTGATGAGTTGTTAGAGTACGTCAACAGTAAAGTGGCCGTCTTCAAGAAGATCAAGGAAGTCCAGTTCGTGGAAGAAATACCCAAGAATTCGGCAGAGTTATATGTATAA

Protein

MSNTLRRTAQQLLKTHKYATATSSIRQKTVEKNILTSVYKDIPVTNMTINDFVWQNLDRWPDKTATVCALTGHGYTYAQTHRMSVTFAASLRSKLKLKNDDKVAVILPNLPEYPCTLLGILQAGCVASMMNPVYTSHELKRQLELIDCKAIVSSKISYANIKQALDELKVNVPIILVDNEGLPEGAIKFAELAEDFNVDIDCLKSVQRGPKDVAILPFSSGTTGFPKAVVLDHGGVVALNQMIIDPEIVVIEETTATHQSVLPAILPFFHIFGFNSLMMNQMAQGVKLVTMPYFKPDLFLQTIVKYKAEVLFIVPPMVVFLGKHPAVKPEHLAAVKGMISGAAPLSAADAAAVLEKNKNIIFRQGYGLTETNGAVTVGRNDDTNHAAVGHVLGSCEVKVADVNTQEALGAGQEGEIWCRGPNLMSGYYLDEKSTREVMTEDGWYKTGDIGKYDENKYLYVTDRLKELIKVKGFQVPPAELETVIRTHSKVLDCAVLGIPDPVTGEVPKAFIVPQQGQTLDADELLEYVNSKVAVFKKIKEVQFVEEIPKNSAELYV

Uniprot

H9JGA8   A0A2A4K2K9   A0A2H1VTI1   A0A212ELC6   A0A194RII1   A0A2A4K2X8   + More
A0A194QI42   A0A2H1V6M1   A0A212ELD3   H9JGA9   A0A2A4K3A4   A0A1Q3FKE9   A0A1Q3FJV1   A0A1Q3FJY7   A0A3S2NX79   B0W6R4   A0A182NR50   A0A182JN78   A0A2H1WC02   A0A182K9W2   A0A182UUK9   A0A182TPK3   Q7QCM8   A0A182R455   A0A182LE43   A0A182HS75   A0A182XAD5   A0A182Y402   A0A1L8DYU5   A0A182PUZ1   A0A1L8DYX6   A0A182VZU2   A0A182LUB0   A0A1L8DYT3   A0A182FQZ2   A0A2M4A7J6   Q17P68   A0A2M4A9F3   A0A182QDT5   W5JKB2   A0A2M4BIF8   A0A2M3ZGD1   A0A2M4BHT0   A0A2H1V6K9   A0A2M4BKZ5   A0A1B0GLA5   A0A3S2LHM1   A0A2J7QAA1   T1PER9   A0A1I8N0U5   A0A182H784   U5EJG4   A0A194RIT5   A0A2A4IY84   A0A0A1WUA9   B3MXL5   A0A194QGE2   A0A0L0CJM9   B4L257   Q29IR9   B4MTA9   H9JGB0   B4JL04   A0A2J7RB04   A0A2J7RB11   A0A3B0JZ59   A0A0N1IT33   B4M8E6   A0A0C9R6E2   A0A2J7QWJ4   A0A1I8QB84   Q9VXZ8   B4PW91   A0A0M5J603   A0A067R080   A0A1W4VFX1   A0A034VMV0   D2A1H8   B3NUW6   A0A2A4K1W8   D2A1H7   A0A194QGQ5   A0A195D8L9   A0A069DUU3   W8AQQ0   A0A195D1W7   A0A026WGV0   A0A195D8N5   A0A0K8SSC0   A0A146L4D3   B4R4X2   A0A0L7R6L2   A0A151WYA4   A0A0N7Z8U2   T1H7X8   A0A2H1VTM1   A0A158ND07   V5GTJ7   E2A045  

Pubmed

19121390    22118469    26354079    12364791    14747013    17210077    + More
20966253    25244985    17510324    20920257    23761445    25315136    26483478    25830018    17994087    26108605    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24845553    25348373    18362917    19820115    26334808    24495485    24508170    30249741    26823975    27129103    21347285    20798317   

EMBL

BABH01002391    BABH01002392    NWSH01000221    PCG78256.1    ODYU01004348    SOQ44127.1    + More
AGBW02014086    OWR42279.1    KQ460154    KPJ17249.1    PCG78254.1    KQ458880    KPJ04600.1    ODYU01000947    SOQ36467.1    OWR42277.1    BABH01002393    BABH01002394    PCG78253.1    GFDL01007082    JAV27963.1    GFDL01007188    JAV27857.1    GFDL01007104    JAV27941.1    RSAL01000117    RVE46830.1    DS231849    EDS36895.1    ODYU01007521    SOQ50362.1    AAAB01008859    EAA08143.4    APCN01000246    GFDF01002456    JAV11628.1    GFDF01002455    JAV11629.1    AXCM01000143    GFDF01002454    JAV11630.1    GGFK01003456    MBW36777.1    CH477193    EAT48565.1    GGFK01004041    MBW37362.1    AXCN02001476    ADMH02001265    ETN63325.1    GGFJ01003457    MBW52598.1    GGFM01006831    MBW27582.1    GGFJ01003456    MBW52597.1    SOQ36468.1    GGFJ01004327    MBW53468.1    AJWK01034692    AJWK01034693    RVE46823.1    NEVH01016331    PNF25515.1    KA647194    AFP61823.1    JXUM01027982    JXUM01027983    JXUM01027984    KQ560806    KXJ80822.1    GANO01002244    JAB57627.1    KPJ17250.1    NWSH01005551    PCG64130.1    GBXI01011870    GBXI01007925    JAD02422.1    JAD06367.1    CH902630    EDV38480.2    KPJ04603.1    JRES01000394    KNC31694.1    CH933810    EDW06797.2    CH379063    EAL32584.2    CH963851    EDW75348.2    BABH01002396    CH916370    EDW00257.1    NEVH01006564    PNF38010.1    PNF38011.1    OUUW01000003    SPP78666.1    KQ435896    KOX69252.1    CH940653    EDW62422.2    GBYB01002856    GBYB01011889    JAG72623.1    JAG81656.1    NEVH01009765    PNF32957.1    AF145610    AE014298    BT120049    AAD38585.1    AAF48408.2    ADA53588.1    ADV37672.1    AFH07387.1    AHN59727.1    CM000162    EDX01722.1    CP012528    ALC48836.1    KK852804    KDR16255.1    GAKP01015174    GAKP01015173    JAC43779.1    KQ971338    EFA01537.1    CH954180    EDV47064.1    PCG78255.1    EFA01538.1    KPJ04599.1    KQ981135    KYN09240.1    GBGD01001041    JAC87848.1    GAMC01015390    JAB91165.1    KQ977012    KYN06394.1    KK107213    QOIP01000007    EZA55292.1    RLU20572.1    KYN09238.1    GBRD01010094    JAG55730.1    GDHC01018826    GDHC01015238    JAP99802.1    JAQ03391.1    CM000366    EDX17929.1    KQ414646    KOC66391.1    KQ982650    KYQ52868.1    GDKW01002395    JAI54200.1    ACPB03018676    SOQ44128.1    ADTU01012156    GALX01004903    JAB63563.1    GL435551    EFN73178.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000283053    + More
UP000002320    UP000075884    UP000075880    UP000075881    UP000075903    UP000075902    UP000007062    UP000075900    UP000075882    UP000075840    UP000076407    UP000076408    UP000075885    UP000075920    UP000075883    UP000069272    UP000008820    UP000075886    UP000000673    UP000092461    UP000235965    UP000095301    UP000069940    UP000249989    UP000007801    UP000037069    UP000009192    UP000001819    UP000007798    UP000001070    UP000268350    UP000053105    UP000008792    UP000095300    UP000000803    UP000002282    UP000092553    UP000027135    UP000192221    UP000007266    UP000008711    UP000078492    UP000078542    UP000053097    UP000279307    UP000000304    UP000053825    UP000075809    UP000015103    UP000005205    UP000000311   

PRIDE

H9JGA8    H9JGA9    H9JGB0    Q9VXZ8   

Pfam

PF00501   AMP-binding        + More
PF13193   AMP-binding_C

Interpro

IPR025110   AMP-bd_C        + More
IPR000873   AMP-dep_Synth/Lig       
IPR020845   AMP-binding_CS       
IPR042099   AMP-dep_Synthh-like_sf       

Gene 3D

3.40.50.12780    

ProteinModelPortal

H9JGA8   A0A2A4K2K9   A0A2H1VTI1   A0A212ELC6   A0A194RII1   A0A2A4K2X8   + More
A0A194QI42   A0A2H1V6M1   A0A212ELD3   H9JGA9   A0A2A4K3A4   A0A1Q3FKE9   A0A1Q3FJV1   A0A1Q3FJY7   A0A3S2NX79   B0W6R4   A0A182NR50   A0A182JN78   A0A2H1WC02   A0A182K9W2   A0A182UUK9   A0A182TPK3   Q7QCM8   A0A182R455   A0A182LE43   A0A182HS75   A0A182XAD5   A0A182Y402   A0A1L8DYU5   A0A182PUZ1   A0A1L8DYX6   A0A182VZU2   A0A182LUB0   A0A1L8DYT3   A0A182FQZ2   A0A2M4A7J6   Q17P68   A0A2M4A9F3   A0A182QDT5   W5JKB2   A0A2M4BIF8   A0A2M3ZGD1   A0A2M4BHT0   A0A2H1V6K9   A0A2M4BKZ5   A0A1B0GLA5   A0A3S2LHM1   A0A2J7QAA1   T1PER9   A0A1I8N0U5   A0A182H784   U5EJG4   A0A194RIT5   A0A2A4IY84   A0A0A1WUA9   B3MXL5   A0A194QGE2   A0A0L0CJM9   B4L257   Q29IR9   B4MTA9   H9JGB0   B4JL04   A0A2J7RB04   A0A2J7RB11   A0A3B0JZ59   A0A0N1IT33   B4M8E6   A0A0C9R6E2   A0A2J7QWJ4   A0A1I8QB84   Q9VXZ8   B4PW91   A0A0M5J603   A0A067R080   A0A1W4VFX1   A0A034VMV0   D2A1H8   B3NUW6   A0A2A4K1W8   D2A1H7   A0A194QGQ5   A0A195D8L9   A0A069DUU3   W8AQQ0   A0A195D1W7   A0A026WGV0   A0A195D8N5   A0A0K8SSC0   A0A146L4D3   B4R4X2   A0A0L7R6L2   A0A151WYA4   A0A0N7Z8U2   T1H7X8   A0A2H1VTM1   A0A158ND07   V5GTJ7   E2A045  

PDB

3TSY     E-value=1.06781e-76,     Score=731

KEGG

101746908    no KO assigned | (RefSeq) 4-coumarate--CoA ligase 1-like

GO

GO:0003824   GO:0016874   GO:0019433   GO:0005739   GO:0046949   GO:0004467   GO:0001676   GO:0008152   GO:0043565   GO:0003676   GO:0005543   GO:0042626   GO:0016887   GO:0005622   GO:0006810  

Length:

556

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.47408

Exp number, first 60 AAs:

0.00165

Total prob of N-in:

0.05796

outside

1  -  556

 

 

Pi

173.044639

Theta

162.622635

Tajima's D

0.326752

CLR

0.240548

CSRT

0.469426528673566

Interpretation

Uncertain