Silkworm Genome Informatics Database

Gene

KWMTBOMO11068 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008307

Annotation

PREDICTED:_connectin-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(-):11973030-11997686 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.974

CDS

ATGTCAACCAACATGAACTTCTGGAGGGTGATCGCAGTCATGTGCGTTGCAACTGCTTTTGTCCAGTCTAAATCAACGCACCATCAGAAAAGGGCCACCCGCCCTAACATCTGTGATCTAGTGTACAATAACACACTGGACGTTCGATGTTACTGCACCAAAGACAATCAAAATCCGAAGATATTTAAAAGCGCTGATTGCTTCCTGTTCGCTGAACACGTAAAGCCAGAAGATGACACCTGGACAGCCTTTGACTACCTTAAAGACGTGACCAAACTAACTTTTACAAAGAACAATATCACCATGAAATATATACCGACTGAGGCGTTGAAATACACAAAATCGGTACTCAACTTAGACATTAAATATGGTAATATAGAGAAAGTTGGAGCATACGCTTTTGCTAATCTAAGCGCTGTTCAAGAAATAACTTTAAGGGGCAATCAAATTAAAATATTAGAAGTAAACGCCTTCGCAGATCACAAAGACCTCGCTATACTTGGCTTGGACACGAACGCGATAGTGGAAATAAACAGAGACGTGTTTGTCAATTTACCCTCATTAGAAAAACTTTATTTAACAAACAATAAGATTACGACGCTACACGACAGAGCGTTTGTGCATTTAAACAATTTAAAAGAAATCGAGATCGATAGAAATAATATATTCAGTTTGAATAGCGAAACATTTTCTGGATTAAAGAAATTGCAGAAATTAGATCTTAGCAGCAATAGTTTAGAGGTTATTGGCGATAATACATTCCTTCCGCTAGTGAATTTAAGGTCTTTGAATTTGGACGGAAATAAGATTCAGATGCTAGACAACAAAGCATTCTTTGGTCTATCGAGCTTGCAATCACTCTCTTTAGCGCACAATAATATTGTGGATATAGACAATTTAAAAGTATTTGAAGGTCTAAAGAGTCTCATATCGCTAAATTTGAGAGGAAATAAAATAAAAATACTAAAAGCTGAAGTTATGGCTCCTATTTTGACCAATTTCTATGGTGGTATCAGCACTCTGGACGTTGACGACAACAACTTCCCGTGTAGCTGCCAGTTGGATTGGTTCACGTCGTTAATGAATAAGACACAAAACGAAAATTTGAAACTTGCGCTCAACAACCTAAAATGCCAACCAGATGCTGCTCTAAGAGAAGCTTGGTCTAAGACCGAGGAGATAGAGAAGAATACCACGCAGACCACGGAAGACGAAGAGACCCAATTCCAGAATCCCGAATACGAATATTACGATAATACTCAACTTGACGGAAAATTCTTTTACGTTGACGTCAGAGATTTATTGAATTGCACTAAAGGTACGAAAACAAAAAGTGAAATTACTACTACAACCAGAAAAAGTCCAACCGCTGCTGACATCAAAGCACCGAGTTCTTACACCACCACGACTGTGAAACCGGAGTTAAATAAAGAACTCACAACGAAACCTGATCAAAAATTGACAACGAAATATTTTACCACCGAAACGAGCGTCACGCAAGGGCACACAACTGCAAAAATGGCTGCAGCTGTAGCAAAGCCCCCTGAAAATCACGTTGTTACTCCAGACGCTACCTCAGTTGAAGCTAAACCTGATAAAATTAAAGCTCATCGCAGTATCCAAGAGAAAGAGACCCCAGATTATTTGAAATCCGGTGCGAACATAAATTTAGGCTGTGTAATGCTTTTAACTGTAATATTGTATTTAATTCACTAA

Protein

MSTNMNFWRVIAVMCVATAFVQSKSTHHQKRATRPNICDLVYNNTLDVRCYCTKDNQNPKIFKSADCFLFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEVNAFADHKDLAILGLDTNAIVEINRDVFVNLPSLEKLYLTNNKITTLHDRAFVHLNNLKEIEIDRNNIFSLNSETFSGLKKLQKLDLSSNSLEVIGDNTFLPLVNLRSLNLDGNKIQMLDNKAFFGLSSLQSLSLAHNNIVDIDNLKVFEGLKSLISLNLRGNKIKILKAEVMAPILTNFYGGISTLDVDDNNFPCSCQLDWFTSLMNKTQNENLKLALNNLKCQPDAALREAWSKTEEIEKNTTQTTEDEETQFQNPEYEYYDNTQLDGKFFYVDVRDLLNCTKGTKTKSEITTTTRKSPTAADIKAPSSYTTTTVKPELNKELTTKPDQKLTTKYFTTETSVTQGHTTAKMAAAVAKPPENHVVTPDATSVEAKPDKIKAHRSIQEKETPDYLKSGANINLGCVMLLTVILYLIH

Uniprot

H9JFL0 A0A2A4JLE3 A0A2H1WC86 A0A212ELE1 A0A1E1WN65 A0A194QGH7 + More
A0A194RIT0 A0A3S2LHN0 A0A0L7KPG1 A0A194RI80 A0A212EY84 H9JGC9 A0A0L7LRI8 A0A194QGQ1

Pubmed

19121390 22118469 26354079 26227816

EMBL

BABH01002376 NWSH01001147 PCG72404.1 ODYU01007688 SOQ50695.1 AGBW02014086 + More
OWR42281.1 GDQN01002697 JAT88357.1 KQ458880 KPJ04597.1 KQ460154 KPJ17245.1 RSAL01000117 RVE46835.1 JTDY01007499 KOB65157.1 KPJ17267.1 AGBW02011598 OWR46445.1 BABH01033645 JTDY01000246 KOB78072.1 KPJ04594.1

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240 UP000283053 + More
UP000037510

PRIDE

H9JFL0 H9JGC9

Pfam

PF13306 LRR_5 + More
PF13855 LRR_8

Interpro

IPR032675   LRR_dom_sf        + More
IPR003591   Leu-rich_rpt_typical-subtyp
IPR001611   Leu-rich_rpt
IPR026906   LRR_5

Gene 3D

3.80.10.10

ProteinModelPortal

H9JFL0 A0A2A4JLE3 A0A2H1WC86 A0A212ELE1 A0A1E1WN65 A0A194QGH7 + More
A0A194RIT0 A0A3S2LHN0 A0A0L7KPG1 A0A194RI80 A0A212EY84 H9JGC9 A0A0L7LRI8 A0A194QGQ1

PDB

3KJ4 E-value=9.09775e-21, Score=249

KEGG

101746528 no KO assigned | (RefSeq) connectin-like

GO

GO:0016021 GO:0005515 GO:0006355 GO:0043565 GO:0003676 GO:0005543 GO:0042626 GO:0016887 GO:0005622 GO:0006810 GO:0003824

SignalP

Position: 1 - 23, Likelihood: 0.936790

Length:

571

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

12.29337

Exp number, first 60 AAs:

4.01431

Total prob of N-in:

0.23571

outside

1 - 571

Pi

177.474579

Theta

143.511385

Tajima's D

0.916197

CLR

0.98035

CSRT

0.643317834108295

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics