SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11058
Pre Gene Modal
BGIBMGA008315
Annotation
PREDICTED:_DNA_repair_protein_REV1_[Bombyx_mori]
Full name
DNA repair protein REV1      
Location in the cell
Nuclear   Reliability : 2.742
 

Sequence

CDS
ATGAGTCGAAATAAACGTGATGATAATTTCCCCGACAATGGGTTCGAGGCATGGGGAGGCTATATGCAAGCCAAAATTGCGAAACTGGAAAATCAGTTTACTTCAGTTACCGCAAAAGAAGAAATTCTTTCGAATATTTTCACTGGTATTAATATATTTGTAAATGGATTTACTATACCTTCAGCAGATGAACTTAAGTGTTTAATGTCCAAACACGGCGGTGTTTATCACACTTATCAAAGAAACGAAGATTTCATTATCGCCACAAATTTGCCAGATACGAAAGTGAAGAATATGTCTTTAGCGAGGGTGGTTAAGCCTGAATGGATAACTGATAGCATTAAAGCGAAAAAGTTACTAGATTACAGGAATTACTTGCTTTTTGGACATTCAAGAACACAAAGAGTGTTAAACTTCACAAAGAGAGTGACAAATGACAAAGATATAGATGAAACGAAATATAGTTCACTCAAAGAAACTTTAATTGAAAATAAAGATACAATAGTAAACAACGATTATTTCAATTCTATAAATTTAAAAAAAAGTACAATAAATACAACAAAACAAATGTGCCAAAACAGTATTAATGGAACTGGAAATGAGATAAATCCGGAAAAGTTGCAGGTCACAAAAACTGCAGCAGATCCCAACTTTATTTCTGAGTTCTACAACAACTCAAGGCTACATCATATTTCACAATTGGGTGCATGTTTCAAGCAGTATGTGAATGATTTGAGAGAACAAAGTAATTTTGTATTTCCCGCAAGACAAAATCTGAAGGACATAATTAAATCATCAAATAATCGATTATCGCAATTAGTCTTTGAAAAAGGAAAAACAATAATGCATATTGATATGGATTGTTTTTTTGTGTCAGTTGGGCTACGTAATAGGCCAGAGTTGAGAGGTAAACCTGTAGCTGTGACGCATTCTAAAGGAGGAATACCGCACATCAAAAGATCTGGTGTAGACAGGAATGCAGAATTTAATTTGTATAAACAGAAACAGGCCAAAAAACTTGTGAAAGACACTGGGTTACAGGGTCAAGAATTGGAAATTGAAACTAGAGTTGATAATATTGGAGATGAGGAGAGTAAATTTGGGTCCATGAGTGAGATAGCATCATGTTCATATGAAGCTAGGGCCAGGGGAGTTGGTAATGGTATGTTTATGGGTGTAGCGTTAAGATTGTGTCCTGATTTACAAACCATTCCATATGATTTTGAGGGTTACAAAGAAGTGGCTTATACTTTATACAATACTGTAGCCCAGTATACATTAGACATAGAAGCAGTCTCATGTGATGAGATGTATGTTGACTGTACAGAACTATTGAAAGATATGAACATGAATGTGCAGGATTTTGCTACAATTTTGAGAGAAGAGATTAAAACAAAAACTGGATGTCCTTGTTCAACAGGATTTGGAGGAAATCGGTTACAAGCAAGGTTGGCCACCAAAAAAGCTAAGCCTGATGGCCAGTTCTTTCTAACTGCAGATCTGGTACAGGATTTCATGTATGAAATCAATCTCAAAGACTTACCAGGTGTCGGTAGACAAATATCACAGAAATTGGAGTTATTGGGGCATACAACTTGTGGAACATTACAGAGTTTATCTTTAGCCACATTAAAATGCCATTTGGGCACTAAAACTGGAGCACAACTGTTTGATCAATGCAGAGGTCGTGGCCAAAATGCTTTAGCATTTCACACTGTGCGAAAATCAGTTTCTGCTGAAGTTAACTATGGTATTAGATTCGAAAATAATGATCAAGCTATTGAATTTTTGAAACAGTTGTCTGCTGAGGTACATTCAAGAATGCAGCAATTTAAAGTTTTAGGAAAATGTATAACTTTGAAGTTGATGGTCAGGGCTGAAGAAGCACCAGTTGAGACTGCAAAGTTTATGGGTCATGGATATTGTAATGTCATTAATAAATCAAATAATCTACCTGCAGCTACTAATGATGTTGAAGTGCTAACCCAGGAAACTATTGAGATATTTAAAAAAATAAATGTAGATGCTAAAGAAATGAGAGGTGTTGGAATACAAGTAACAAAATTGGTGCTAATTATTAAACAGCAAAGTAAAGGTGCCATCAGTAAATTTCTTTGTAACAAACCAACAATCATAAATATCAAAAGAGAATCCAAAACTGAAGTTGTTTCAAACAAAATAAACTTAGAGAACAATGAAAATAAACAACTTCAATTGAAAAATTCTAGGCTAAAGAAAAAATCTCCAACAACTGATAAAACTAAATCACCACCAGGGAAAAGACGAGGAAGACCACCCAAGGCACTTACTTTAGAACAAAAAGAAAAAAAACGTGCCATAAGTAAATCCGGAGTAGAAGCCAGAGATACACCATTCAAGAATCCAATGATGAAACCACAAAATTCACTCAAAGAAACAAAAATTAAAGTTGAAAAAACGGAAGGCCTCTTAGGTCTGCCGTGGAATAAAGCGAGAGAATTACTGAGAGCTTGGTTAGACAGTGGCCAAAAACCTCTAAGTTGCGATATCAGAATGATAGCAGAGTATATGAGAGAGATGGTAATTAAAAAAGAAATTGACAAAGTCGAAATATTGATAAACTTTTTAAGCAGAAGGACTGAGGAAATTGGTAGTCAAGTCTGGCTGGATGTGTATTGCCATGTTGTCGAACAAGTCCAGAATGCTATGATAGCTATTTACGGGACAAGGTTACATATTGACGCAACCTGA
Protein
MSRNKRDDNFPDNGFEAWGGYMQAKIAKLENQFTSVTAKEEILSNIFTGINIFVNGFTIPSADELKCLMSKHGGVYHTYQRNEDFIIATNLPDTKVKNMSLARVVKPEWITDSIKAKKLLDYRNYLLFGHSRTQRVLNFTKRVTNDKDIDETKYSSLKETLIENKDTIVNNDYFNSINLKKSTINTTKQMCQNSINGTGNEINPEKLQVTKTAADPNFISEFYNNSRLHHISQLGACFKQYVNDLREQSNFVFPARQNLKDIIKSSNNRLSQLVFEKGKTIMHIDMDCFFVSVGLRNRPELRGKPVAVTHSKGGIPHIKRSGVDRNAEFNLYKQKQAKKLVKDTGLQGQELEIETRVDNIGDEESKFGSMSEIASCSYEARARGVGNGMFMGVALRLCPDLQTIPYDFEGYKEVAYTLYNTVAQYTLDIEAVSCDEMYVDCTELLKDMNMNVQDFATILREEIKTKTGCPCSTGFGGNRLQARLATKKAKPDGQFFLTADLVQDFMYEINLKDLPGVGRQISQKLELLGHTTCGTLQSLSLATLKCHLGTKTGAQLFDQCRGRGQNALAFHTVRKSVSAEVNYGIRFENNDQAIEFLKQLSAEVHSRMQQFKVLGKCITLKLMVRAEEAPVETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIFKKINVDAKEMRGVGIQVTKLVLIIKQQSKGAISKFLCNKPTIINIKRESKTEVVSNKINLENNENKQLQLKNSRLKKKSPTTDKTKSPPGKRRGRPPKALTLEQKEKKRAISKSGVEARDTPFKNPMMKPQNSLKETKIKVEKTEGLLGLPWNKARELLRAWLDSGQKPLSCDIRMIAEYMREMVIKKEIDKVEILINFLSRRTEEIGSQVWLDVYCHVVEQVQNAMIAIYGTRLHIDAT

Summary

Description
Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents.
Similarity
Belongs to the DNA polymerase type-Y family.
Belongs to the mitochondrial carrier (TC 2.A.29) family.
Feature
chain  DNA repair protein REV1
EC Number
2.7.7.-
EMBL
BABH01002317    ODYU01011852    SOQ57834.1    JTDY01000113    KOB78782.1    NWSH01000359    + More
PCG77017.1    AGBW02014369    OWR41775.1    KQ459604    KPI92454.1    KK852618    KDR20130.1    GEDC01016245    GEDC01004196    JAS21053.1    JAS33102.1    GBXI01017133    JAC97158.1    JRES01001060    KNC25926.1    FX985855    BBA93742.1    GBBI01003801    JAC14911.1    GAKP01021079    GAKP01021077    JAC37873.1    GDHF01008885    JAI43429.1    GDHF01008483    JAI43831.1    GDHF01015728    GDHF01014261    JAI36586.1    JAI38053.1    GFDL01014570    JAV20475.1    JXJN01001739    DS231969    EDS29710.1    KQ982959    KYQ48769.1    CCAG010019524    KQ976435    KYM87069.1    KQ414646    KOC66420.1    ACPB03004679    ACPB03004680    GL764292    EFZ17938.1    GL435225    EFN73756.1    APGK01052855    KB741216    ENN72480.1    KB632404    ERL95063.1    NNAY01001672    OXU23261.1    GL888181    EGI65810.1    CP012525    ALC43278.1    KQ978615    KYN29814.1    ATLV01022053    KE525327    KFB47136.1    AXCM01004283    GDRN01098677    JAI58906.1    AAAB01008960    EAA11364.4    CH940647    EDW69446.1    CH379070    EAL30303.2    CH963847    EDW73374.1    UFQS01000305    UFQT01000305    SSX02676.1    SSX23050.1    QCYY01000775    ROT82788.1    CH902618    KPU78063.1    EDV39486.1    AE014296    AB049435    AAF47401.1    BAB15801.1    QOIP01000010    RLU17933.1    AXCN02000418    BT031311    ABY21724.1    KK107348    EZA52210.1    LBMM01003755    KMQ93172.1    CH916366    EDV96067.1    CM000159    EDW92739.1    CH933809    EDW18052.2    CH954178    EDV50065.1    CM002912    KMY96701.1    APCN01000100    GBHO01029437    GBHO01029436    JAG14167.1    JAG14168.1    GBRD01009661    GBRD01009659    GBRD01009658    JAG56163.1    OUUW01000012    SPP87497.1    GL732583    EFX74425.1    GDIQ01032457    JAN62280.1    GDIQ01258816    JAJ92908.1    DS235335    EEB14876.1    GDIP01138622    JAL65092.1    GDIQ01224378    JAK27347.1    JH431842    PYGN01000186    PSN51751.1    AKHW03001628    KYO41428.1    KYO41427.1    PZQS01000002    PVD37086.1    AMQN01008979    KB304272    ELU02195.1    BX248325   
Pfam
PF11799   IMS_C        + More
PF16727   REV1_C
PF00817   IMS
PF16589   BRCT_2
PF11798   IMS_HHH
PF14377   UBM
PF00533   BRCT
PF00096   zf-C2H2
PF00153   Mito_carr
PF08510   PIG-P
Interpro
IPR017961   DNA_pol_Y-fam_little_finger        + More
IPR036775   DNA_pol_Y-fam_lit_finger_sf       
IPR031991   Rev1_C       
IPR012112   REV1       
IPR038401   Rev1_C_sf       
IPR001126   UmuC       
IPR001357   BRCT_dom       
IPR024728   PolY_HhH_motif       
IPR036420   BRCT_dom_sf       
IPR025527   HUWE1/Rev1_UBM       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR018108   Mitochondrial_sb/sol_carrier       
IPR023395   Mt_carrier_dom_sf       
IPR013717   PIG-P       
IPR022880   DNApol_IV       
SUPFAM
SSF100879   SSF100879        + More
SSF52113   SSF52113       
SSF57667   SSF57667       
SSF103506   SSF103506       
PDB
3GQC     E-value=4.29673e-112,     Score=1038

Ontologies

Topology

Subcellular location
Nucleus  
Length:
909
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.04232999999999
Exp number, first 60 AAs:
3.85011
Total prob of N-in:
0.20731
outside
1  -  909
 
 

Population Genetic Test Statistics

Pi
212.873167
Theta
240.322627
Tajima's D
-1.010608
CLR
2964.282336
CSRT
0.137943102844858
Interpretation
Uncertain
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