Gene

KWMTBOMO11057

Pre Gene Modal

BGIBMGA008544

Annotation

PREDICTED:_tubulin-specific_chaperone_cofactor_E-like_protein_isoform_X2_[Papilio_xuthus]

Location

Bomo_Chr18(+):11432845-11463931      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.635 Nuclear   Reliability : 1.761

CDS

ATGCCGTCGCTTTTGGAAGCCCTTGAGCGCAAATACGGCGCTAAGGGCGAAGTAAATCCATCAATTGACGACATGCCAGTTGCCATATTTGTGCCTAAACGCTCCCCGAGGCTTAGCGTACCCACACTGCTAGTACTCAACGATTGCGATATAGACTGTGCCGGAGATGCATGTATACTAGCAGATAAATGTGCGGACGTTGTTGAACTTGATCTAGCTAACAATAAATTAACTGAATGGCAAGAGGTGTTTGCAATATTAGAGCAGACTCCACGAGTTCGATTCCTTAATTTGAGTTTTAACAGGCTTTCGGCTCAGATTCAAGCAGCCCAGTCATTACGGCCCAGATTGGATAGTTTGAGCTATCTGGTCCTTAACTCTACCTATGTTAGTTGGCCAAGTGTTCATTCGTTACTCAAGGCTCTCCCAGCTCTCGAAGAACTGCACTTGAGCCTCAATGAGTATTCGTATGTGAATTTAACTGGACAAGAAGTCGACGAAAAGGATCGTTGCAATGCATGTTCCCGTTTGAACGTTGCTGATGTCACTGAGCCAGTTCATGAACAGCTAAAGAAACTTCATTTCTCCGGGAATCCAGTCAGCAGCTGGTGGGAGATTTCCAAATTGGGCTATGCCTTCCCCAATCTGGAAACGCTCCTCGTTAATGAATGTCATTTAACAACCTTAGAGCCGGATCCTTGCGAGAAGTGTGGAGACGAAAACGGGAACAAAAAGAGTCACGATGCTTTCTCACATTTACGCTTCCTTAATCTGAACAACACCGGTTTGGCAACATGGGATGAAGTGGATCGGTTGGCGCGGTTTCCTGCCCTGAAAAGTTTACGAGTTCAGGGTTGGCCGCTGTGGGAACGCGTCGAGTCAACAGAGCACGAGAGACGATTGCTTTTAGTGGCTCGTCTCCCTCACATAAGGACCTTGAACGGAGGAGGGGCGGTCCCTGTTGAAGAACGAGATGCTGCAGAGAGGGCCTTCATCAGATATTACATGGAAAAGCCAGAGGCCGATCGACCGGATAGATACTGGGAGCTGGTGCACGTGCACGGCAAGCTCGATCCGCTGGTGTCCGTGGACCTGCGGCCCGAGAAGCGCGTGCAGATCACGTTCACGTGCGGGGACACGAGCGAAGTGCGCACCGTCGACGTTTACAGGACTGTTTCTGATCTAAAAACAAGATTGGAGCGGTTAGCTGGCTTCCCGGCTGCGAAGATGCGGCTCTTTTACGTGGACCAAGAACTGAGAGATACGCAGGGTCCCGAAGAGATGAAGTACCCTACGAAGCAGCTATACTCGTACAACATCAGGTCGGGGGATGAGATCATCATCGACTCGAAACTGAAGCACTCTATATCGGCCAACTCGACCGCCTGA

Protein

MPSLLEALERKYGAKGEVNPSIDDMPVAIFVPKRSPRLSVPTLLVLNDCDIDCAGDACILADKCADVVELDLANNKLTEWQEVFAILEQTPRVRFLNLSFNRLSAQIQAAQSLRPRLDSLSYLVLNSTYVSWPSVHSLLKALPALEELHLSLNEYSYVNLTGQEVDEKDRCNACSRLNVADVTEPVHEQLKKLHFSGNPVSSWWEISKLGYAFPNLETLLVNECHLTTLEPDPCEKCGDENGNKKSHDAFSHLRFLNLNNTGLATWDEVDRLARFPALKSLRVQGWPLWERVESTEHERRLLLVARLPHIRTLNGGGAVPVEERDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTSEVRTVDVYRTVSDLKTRLERLAGFPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEIIIDSKLKHSISANSTA

Similarity

Belongs to the potassium channel family.

Uniprot

A0A1E1WPM1   A0A2H1WXN7   A0A2A4JYA8   A0A1E1WU68   A0A0N0PBT0   S4PXG4   + More
A0A212FAJ6   A0A3S2M5B6   A0A194PMV5   A0A0L7LU89   D2A1Y4   U4UKC2   J3JWV6   A0A1L8E5X2   A0A1B0CX35   U5EXJ5   A0A1Y1MS15   B0X188   A0A023ET00   A0A1Q3FKD9   Q17CU4   A0A336MA02   A0A336MHJ0   A0A151X747   A0A2J7PGD2   A0A182GHI7   A0A026WKS0   A0A195ES82   E2BHG6   A0A1B6DSK6   A0A154P4T6   A0A0M8ZWL0   A0A151JQU4   A0A151I364   A0A158NSD2   A0A3L8DAC9   F4W5L4   E2AEE5   A0A087ZWA8   A0A0L7QV09   A0A195D571   E9IYF1   A0A067QWB7   A0A1J1IFV5   A0A1A9W2G9   K7J345   A0A2H8TP41   J9K6N8   A0A1A9ZGX1   A0A2S2QU29   Q7K549   A0A1A9VD05   W5JLY1   C6SUV9   A0A2M4BL03   E0VIM4   B4QIA0   B4HME2   B3MBF3   B3N6H4   A0A1I8PBM8   Q7QHD6   B4NX61   A0A1W4VCP0   Q290I9   A0A182LYF2   B4KN73   A0A182J9Z7   A0A182RW55   A0A2M3Z0M0   A0A2M3Z0P6   A0A1A9XAB4   B4GBS7   A0A182FW50   T1PBR7   A0A1I8NE40   A0A3B0JSJ4   B4MIM1   A0A182Q1F6   A0A0A9X3S2   B4LKB5   A0A182N2A2   A0A0M5IX47   B4J6V6   A0A0N7Z958   T1I0V1   A0A023F2S4   A0A1B6GSG0   A0A1B0FNK7   A0A069DZ16   A0A2M4A475   A0A1B6LPC6   A0A182KL14   A0A2R7WGU9   A0A0C9Q0W7   A0A1Y1MWW4   A0A2M4A693   A0A182WDK0  

Pubmed

26354079    23622113    22118469    26227816    18362917    19820115    + More
23537049    22516182    28004739    24945155    17510324    26483478    24508170    20798317    21347285    30249741    21719571    21282665    24845553    20075255    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    20566863    17994087    22936249    12364791    17550304    15632085    25315136    25401762    26823975    27129103    25474469    26334808    20966253   

EMBL

GDQN01010136    GDQN01002095    JAT80918.1    JAT88959.1    ODYU01011852    SOQ57835.1    + More
NWSH01000359    PCG77005.1    GDQN01000540    GDQN01000233    JAT90514.1    JAT90821.1    KQ460813    KPJ12152.1    GAIX01005083    JAA87477.1    AGBW02009455    OWR50764.1    RSAL01000035    RVE51324.1    KQ459604    KPI92455.1    JTDY01000113    KOB78786.1    KQ971338    EFA02067.1    KB632390    ERL94529.1    BT127724    AEE62686.1    GFDF01000008    JAV14076.1    AJWK01033180    GANO01000057    JAB59814.1    GEZM01024211    JAV87868.1    DS232256    EDS38537.1    GAPW01001176    JAC12422.1    GFDL01007073    JAV27972.1    CH477304    EAT44178.1    UFQS01000769    UFQT01000769    SSX06740.1    SSX27085.1    UFQT01001095    SSX28891.1    KQ982459    KYQ56149.1    NEVH01025635    PNF15389.1    JXUM01011798    KQ560338    KXJ82969.1    KK107167    EZA56266.1    KQ981993    KYN31031.1    GL448287    EFN84935.1    GEDC01030871    GEDC01028021    GEDC01020684    GEDC01017087    GEDC01008631    GEDC01000902    JAS06427.1    JAS09277.1    JAS16614.1    JAS20211.1    JAS28667.1    JAS36396.1    KQ434819    KZC06959.1    KQ435821    KOX72407.1    KQ978642    KYN29490.1    KQ976543    KYM80972.1    ADTU01024828    QOIP01000010    RLU17455.1    GL887655    EGI70511.1    GL438828    EFN68197.1    KQ414727    KOC62497.1    KQ976881    KYN07574.1    GL767018    EFZ14354.1    KK853289    KDR08895.1    CVRI01000048    CRK99133.1    GFXV01004138    MBW15943.1    ABLF02016657    ABLF02016659    ABLF02016660    ABLF02055163    GGMS01012048    MBY81251.1    AE013599    AY051458    AAF58828.1    AAK92882.1    AAM68775.1    AGB93386.1    ADMH02001151    ETN63895.1    BT088951    ACT79357.1    GGFJ01004490    MBW53631.1    DS235201    EEB13230.1    CM000362    CM002911    EDX06460.1    KMY92723.1    CH480816    EDW47219.1    CH902619    EDV36078.1    CH954177    EDV58143.1    AAAB01008816    EAA05315.4    CM000157    EDW89622.1    CM000071    EAL25373.1    AXCM01001629    CH933808    EDW08900.1    GGFM01001328    MBW22079.1    GGFM01001342    MBW22093.1    CH479181    EDW32335.1    KA645555    AFP60184.1    OUUW01000001    SPP74078.1    CH963719    EDW71960.1    AXCN02001730    GBHO01028225    GBHO01028222    GBRD01017094    GBRD01017093    GDHC01021823    GDHC01017359    JAG15379.1    JAG15382.1    JAG48733.1    JAP96805.1    JAQ01270.1    CH940648    EDW61706.1    CP012524    ALC40581.1    CH916367    EDW02037.1    GDKW01001467    JAI55128.1    ACPB03017977    GBBI01003082    JAC15630.1    GECZ01004410    JAS65359.1    CCAG010001879    GBGD01001425    JAC87464.1    GGFK01002209    MBW35530.1    GEBQ01014375    JAT25602.1    KK854788    PTY18739.1    GBYB01007553    JAG77320.1    GEZM01024212    JAV87867.1    GGFK01002827    MBW36148.1   

Proteomes

UP000218220    UP000053240    UP000007151    UP000283053    UP000053268    UP000037510    + More
UP000007266    UP000030742    UP000092461    UP000002320    UP000008820    UP000075809    UP000235965    UP000069940    UP000249989    UP000053097    UP000078541    UP000008237    UP000076502    UP000053105    UP000078492    UP000078540    UP000005205    UP000279307    UP000007755    UP000000311    UP000005203    UP000053825    UP000078542    UP000027135    UP000183832    UP000091820    UP000002358    UP000007819    UP000092445    UP000000803    UP000078200    UP000000673    UP000009046    UP000000304    UP000001292    UP000007801    UP000008711    UP000095300    UP000007062    UP000002282    UP000192221    UP000001819    UP000075883    UP000009192    UP000075880    UP000075900    UP000092443    UP000008744    UP000069272    UP000095301    UP000268350    UP000007798    UP000075886    UP000008792    UP000075884    UP000092553    UP000001070    UP000015103    UP000092444    UP000075882    UP000075920   

PRIDE

B0X188    Q7K549    C6SUV9   

Pfam

PF14560   Ubiquitin_2        + More
PF00240   ubiquitin
PF00520   Ion_trans

Interpro

IPR029071   Ubiquitin-like_domsf        + More
IPR032675   LRR_dom_sf       
IPR000626   Ubiquitin_dom       
IPR001611   Leu-rich_rpt       
IPR005821   Ion_trans_dom       
IPR003937   K_chnl_volt-dep_KCNQ       
IPR028325   VG_K_chnl       

SUPFAM

SSF54236   SSF54236       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A1E1WPM1   A0A2H1WXN7   A0A2A4JYA8   A0A1E1WU68   A0A0N0PBT0   S4PXG4   + More
A0A212FAJ6   A0A3S2M5B6   A0A194PMV5   A0A0L7LU89   D2A1Y4   U4UKC2   J3JWV6   A0A1L8E5X2   A0A1B0CX35   U5EXJ5   A0A1Y1MS15   B0X188   A0A023ET00   A0A1Q3FKD9   Q17CU4   A0A336MA02   A0A336MHJ0   A0A151X747   A0A2J7PGD2   A0A182GHI7   A0A026WKS0   A0A195ES82   E2BHG6   A0A1B6DSK6   A0A154P4T6   A0A0M8ZWL0   A0A151JQU4   A0A151I364   A0A158NSD2   A0A3L8DAC9   F4W5L4   E2AEE5   A0A087ZWA8   A0A0L7QV09   A0A195D571   E9IYF1   A0A067QWB7   A0A1J1IFV5   A0A1A9W2G9   K7J345   A0A2H8TP41   J9K6N8   A0A1A9ZGX1   A0A2S2QU29   Q7K549   A0A1A9VD05   W5JLY1   C6SUV9   A0A2M4BL03   E0VIM4   B4QIA0   B4HME2   B3MBF3   B3N6H4   A0A1I8PBM8   Q7QHD6   B4NX61   A0A1W4VCP0   Q290I9   A0A182LYF2   B4KN73   A0A182J9Z7   A0A182RW55   A0A2M3Z0M0   A0A2M3Z0P6   A0A1A9XAB4   B4GBS7   A0A182FW50   T1PBR7   A0A1I8NE40   A0A3B0JSJ4   B4MIM1   A0A182Q1F6   A0A0A9X3S2   B4LKB5   A0A182N2A2   A0A0M5IX47   B4J6V6   A0A0N7Z958   T1I0V1   A0A023F2S4   A0A1B6GSG0   A0A1B0FNK7   A0A069DZ16   A0A2M4A475   A0A1B6LPC6   A0A182KL14   A0A2R7WGU9   A0A0C9Q0W7   A0A1Y1MWW4   A0A2M4A693   A0A182WDK0  

PDB

5YXM     E-value=7.91576e-05,     Score=110

KEGG

101745720    K22449 tubulin-specific chaperone cofactor E-like protein | (RefSeq) tubulin-specific chaperone cofa

GO

GO:0007021   GO:0005737   GO:0007023   GO:0043014   GO:0000226   GO:0007291   GO:0031117   GO:0005930   GO:0004806   GO:0004771   GO:0005249   GO:0008076   GO:0005515   GO:0008201   GO:0016021   GO:0003676   GO:0005543   GO:0042626   GO:0016887   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR11537  

Length:

462

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00137

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00064

outside

1  -  462

 

 

Pi

267.278497

Theta

174.958986

Tajima's D

0.997956

CLR

0.32114

CSRT

0.659917004149792

Interpretation

Uncertain