Gene

KWMTBOMO11027

Pre Gene Modal

BGIBMGA008533

Annotation

PREDICTED:_telomerase_Cajal_body_protein_1_[Amyelois_transitella]

Location

Bomo_Chr18(+):10173309-10177389      View in EpiBrowser

Full name

Telomerase Cajal body protein 1 homolog      

Alternative Name

WD repeat-containing protein 79

Location in the cell

Extracellular   Reliability : 1.387 Nuclear   Reliability : 1.208

CDS

ATGGAGACACCATCAAGAATAAACGCTGAAAATATACCTCAAACCATAACTCAAAATCCGAGTGAACTTACATTGGGTTCGGCGTGTACAGAAAACGCTTTTCAATATCCAGCATTATTTACAAGCAAAAGCTTTCTTGAATTGTCCACTTGCTCGTGGTCAAGGGGTCGTAATGCTAATGAGAATATACAGCCTTATTTACGTGGATGTAAGTGGTCCCCAGATGGAACCTGTTGCTTAAGTGTTGTCAATAACGATGGTGTTCATGTTACCGAGCTTCCTAGTGAATTGTACCAGGGCGTTGTTTGTGGCGATCGTATAATCGATGTCTTAGAATCAGTGATACATTTAAAAGAAACAGGTTCAGTTTACGACTTCTGTTGGTACCCATTCATGAACAGCACAAATCCCCCTTCCTGTTGCTGGTTAACAACAAAACAAAATTCTCCCATACAAATGTGGGATGCATTTGATGGATCACTCAGATGTTCATACAGAGGATTCAATGCAGTAGATGAAATGGAACCAGCTTTATCAGTTAGCTTTACCTCAGATGGTAGAAAAATCATTGCTGGCTATAAGAAGCATTTAAGAATTTTTGATGTTGAGCGGCCTGGCAGAGAATTTACTGAGCAAAAGATTTCTAGTTCAGCATCTAGCATTTCAACACAAAATAACTTAGTTGCTGTTGGTTCTTGGAATACAACAATAACTTTGTATAATGAATCAGAAATTGGTACTAAGAAAATTGGGGACATGTATGGACATGGAGGTGGAGTAACGCACATGAAATTCATTCCTGGTACTTTGAAGCTTGTTTCTGGTGCAAGAAAAGATCACAGACTGTTTGTTTGGGACATACGGTATTATAGGAAACCACTAAACATTCTGAGTAGAGTTGTAAATACGAACCAACGAATTTATTTTGATATATCACCTTGTGGAAAATATTTGGTATCGGGTGGTACAGATGGAGTGGTAAAAGTTTGGTCACTTGATCATATAGATTGGCATTCTAGTTTAGATCCAGTTAATAATACAACTGATGATGTTACTTATAAGTTTCCTTTATACAAAGATTGCTGCAATAGCATATCAATTCATCCATATAGACCCATATTGGCTACCGGATCTGGTCAATATCATTTCACAGACCCGATAAAATCTTTGAGTGAGAAAACGAATAATGAAGCCGTAGATTCTAGTTCTGATGATTCTATTAACCAGTATGATATACGATACTCTAGTCACAGTGAAAATTGTTTGACGTTCTGGTGGACTGGGGATGTTATAGAATTAAATAAAAACCTACGTCGTTGTGTTTAA

Protein

METPSRINAENIPQTITQNPSELTLGSACTENAFQYPALFTSKSFLELSTCSWSRGRNANENIQPYLRGCKWSPDGTCCLSVVNNDGVHVTELPSELYQGVVCGDRIIDVLESVIHLKETGSVYDFCWYPFMNSTNPPSCCWLTTKQNSPIQMWDAFDGSLRCSYRGFNAVDEMEPALSVSFTSDGRKIIAGYKKHLRIFDVERPGREFTEQKISSSASSISTQNNLVAVGSWNTTITLYNESEIGTKKIGDMYGHGGGVTHMKFIPGTLKLVSGARKDHRLFVWDIRYYRKPLNILSRVVNTNQRIYFDISPCGKYLVSGGTDGVVKVWSLDHIDWHSSLDPVNNTTDDVTYKFPLYKDCCNSISIHPYRPILATGSGQYHFTDPIKSLSEKTNNEAVDSSSDDSINQYDIRYSSHSENCLTFWWTGDVIELNKNLRRCV

Description

RNA chaperone that plays a key role in Cajal body formation (PubMed:24149844). Specifically recognizes and binds the Cajal body box (CAB box) present in both small Cajal body RNAs (scaRNAs) (PubMed:19285445). Probably acts by mediating localization of scaRNAs to Cajal bodies (PubMed:24149844).

Similarity

Belongs to the TCAB1 family.

Keywords

Alternative splicing   Chaperone   Complete proteome   Nucleus   Reference proteome   Repeat   RNA-binding   WD repeat  

Feature

chain  Telomerase Cajal body protein 1 homolog
splice variant  In isoform B.

Uniprot

H9JG86   A0A3S2M4Q5   A0A2A4JTH1   S4PGI7   A0A212F2D8   A0A212F9E5   + More
A0A0N1IQ77   A0A2H1X197   A0A194PMY0   D6WY97   A0A182H3I0   Q16ZK8   A0A1W4W571   A0A1Y1K2J5   B0WME5   U5ERG3   A0A182JHP2   A0A182R1I2   A0A084VRW1   A0A1I8NMM6   A0A182PC17   A0A1I8MP59   A0A0L0CHJ5   A0A182NWI3   A0A182TD59   A0A182VQX3   A0A182VEY0   A0A182YJU9   A0A1A9XBB9   A0A182KM45   A0A034VKI0   A7UVK0   A0A0K8UK13   A0A0K8UQB6   A0A182QV15   A0A182I0F8   A0A1B0AAL4   A0A034VPR0   W8BS50   A0A182XBM4   A0A0A1WXT3   A0A182M3S5   A0A1B0B2A7   N6TE16   A0A1A9VA71   A0A1A9W2K6   A0A336MNG4   A0A2M4AQN4   A0A2M4CV90   B4JAZ5   B4P0N7   B3MKH5   A0A2M4CUT6   A0A1J1IIB4   B4KL92   A0A0J9TGV8   B4LRN4   B3N5G3   A0A182FQL0   B4MUV8   Q6NL34-2   A0A1B0FHD9   Q29PP9   Q6NL34   B4I1S1   A0A3B0KK42   A0A1W4UY38   A0A0M5IXX2   A0A182SWS5   A0A182K9K3   A0A2B4RQF2   A0A067QSU7   A0A1Z5KXK2   A0A336KVH4   A0A2J7R894   A0A3M6T6I5   A0A226DFF4   A7S8H7   A0A087T5Q3   V4ACS8   A0A293L901   A0A131Y293   A0A1B6D0K4   E9GCZ1   V5IJY4   A0A023F0Q5   A0A2R5LDH2   A0A0L7QRJ7   A0A2D4FAS9   A0A1S3EYF3   A0A131YZ05   A0A1S3KEV2   A0A210PWN9   L9KLI3   A0A1E1XR02   A0A131XNQ9   G3MPS2  

Pubmed

19121390    23622113    22118469    26354079    18362917    19820115    + More
26483478    17510324    28004739    24438588    25315136    26108605    25244985    20966253    25348373    12364791    14747013    17210077    24495485    25830018    23537049    17994087    17550304    22936249    18057021    10731132    12537572    19285445    24149844    15632085    24845553    28528879    30382153    17615350    23254933    21292972    25765539    25474469    26830274    28812685    23385571    29209593    28049606    22216098   

EMBL

BABH01002216    RSAL01000035    RVE51348.1    NWSH01000670    PCG74914.1    GAIX01003647    + More
JAA88913.1    AGBW02010756    OWR47892.1    AGBW02009596    OWR50354.1    KQ459718    KPJ20242.1    ODYU01012629    SOQ59047.1    KQ459604    KPI92480.1    KQ971357    EFA07741.1    JXUM01003816    JXUM01003817    KQ560164    KXJ84061.1    CH477489    EAT40066.1    GEZM01099984    JAV53077.1    DS231997    EDS31002.1    GANO01003742    JAB56129.1    ATLV01015783    KE525036    KFB40705.1    JRES01000477    KNC30949.1    GAKP01015166    GAKP01015164    JAC43786.1    AAAB01008987    EDO63221.2    GDHF01025428    JAI26886.1    GDHF01023606    JAI28708.1    AXCN02000189    APCN01002074    GAKP01015162    JAC43790.1    GAMC01004593    JAC01963.1    GBXI01010428    JAD03864.1    AXCM01000371    JXJN01007539    APGK01041603    KB740994    KB632255    ENN75993.1    ERL90647.1    UFQT01001628    SSX31245.1    GGFK01009773    MBW43094.1    GGFL01004933    MBW69111.1    CH916368    EDW02865.1    CM000157    EDW87932.2    CH902620    EDV31528.2    GGFL01004934    MBW69112.1    CVRI01000048    CRK98798.1    CH933807    EDW11753.2    CM002910    KMY88475.1    CH940649    EDW63629.1    KRF81206.1    KRF81207.1    CH954177    EDV59042.2    CH963857    EDW76303.1    AE014134    AY052052    BT012509    CCAG010001184    CH379058    EAL34243.3    CH480820    EDW54478.1    OUUW01000010    SPP86126.1    CP012523    ALC38186.1    LSMT01000405    PFX18548.1    KK853323    KDR08525.1    GFJQ02007118    JAV99851.1    UFQS01001151    UFQT01001151    SSX09261.1    SSX29163.1    NEVH01006723    PNF37063.1    RCHS01004213    RMX36952.1    LNIX01000021    OXA43860.1    DS469598    EDO39943.1    KK113548    KFM60442.1    KB202014    ESO92885.1    GFWV01000152    MAA24882.1    GEFM01003201    JAP72595.1    GEDC01018145    GEDC01015489    JAS19153.1    JAS21809.1    GL732539    EFX82777.1    GANP01000632    JAB83836.1    GBBI01003635    JAC15077.1    GGLE01003454    MBY07580.1    KQ414784    KOC61121.1    IACJ01065650    IACJ01065652    IACJ01065653    LAA44610.1    GEDV01004330    JAP84227.1    NEDP02005438    OWF40908.1    KB320771    ELW63593.1    GFAA01001740    JAU01695.1    GEFH01000726    JAP67855.1    JO843873    AEO35490.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000053268    + More
UP000007266    UP000069940    UP000249989    UP000008820    UP000192223    UP000002320    UP000075880    UP000075900    UP000030765    UP000095300    UP000075885    UP000095301    UP000037069    UP000075884    UP000075902    UP000075920    UP000075903    UP000076408    UP000092443    UP000075882    UP000007062    UP000075886    UP000075840    UP000092445    UP000076407    UP000075883    UP000092460    UP000019118    UP000030742    UP000078200    UP000091820    UP000001070    UP000002282    UP000007801    UP000183832    UP000009192    UP000008792    UP000008711    UP000069272    UP000007798    UP000000803    UP000092444    UP000001819    UP000001292    UP000268350    UP000192221    UP000092553    UP000075901    UP000075881    UP000225706    UP000027135    UP000235965    UP000275408    UP000198287    UP000001593    UP000054359    UP000030746    UP000000305    UP000053825    UP000081671    UP000085678    UP000242188    UP000011518   

PRIDE

H9JG86   

Pfam

PF00400   WD40

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9JG86   A0A3S2M4Q5   A0A2A4JTH1   S4PGI7   A0A212F2D8   A0A212F9E5   + More
A0A0N1IQ77   A0A2H1X197   A0A194PMY0   D6WY97   A0A182H3I0   Q16ZK8   A0A1W4W571   A0A1Y1K2J5   B0WME5   U5ERG3   A0A182JHP2   A0A182R1I2   A0A084VRW1   A0A1I8NMM6   A0A182PC17   A0A1I8MP59   A0A0L0CHJ5   A0A182NWI3   A0A182TD59   A0A182VQX3   A0A182VEY0   A0A182YJU9   A0A1A9XBB9   A0A182KM45   A0A034VKI0   A7UVK0   A0A0K8UK13   A0A0K8UQB6   A0A182QV15   A0A182I0F8   A0A1B0AAL4   A0A034VPR0   W8BS50   A0A182XBM4   A0A0A1WXT3   A0A182M3S5   A0A1B0B2A7   N6TE16   A0A1A9VA71   A0A1A9W2K6   A0A336MNG4   A0A2M4AQN4   A0A2M4CV90   B4JAZ5   B4P0N7   B3MKH5   A0A2M4CUT6   A0A1J1IIB4   B4KL92   A0A0J9TGV8   B4LRN4   B3N5G3   A0A182FQL0   B4MUV8   Q6NL34-2   A0A1B0FHD9   Q29PP9   Q6NL34   B4I1S1   A0A3B0KK42   A0A1W4UY38   A0A0M5IXX2   A0A182SWS5   A0A182K9K3   A0A2B4RQF2   A0A067QSU7   A0A1Z5KXK2   A0A336KVH4   A0A2J7R894   A0A3M6T6I5   A0A226DFF4   A7S8H7   A0A087T5Q3   V4ACS8   A0A293L901   A0A131Y293   A0A1B6D0K4   E9GCZ1   V5IJY4   A0A023F0Q5   A0A2R5LDH2   A0A0L7QRJ7   A0A2D4FAS9   A0A1S3EYF3   A0A131YZ05   A0A1S3KEV2   A0A210PWN9   L9KLI3   A0A1E1XR02   A0A131XNQ9   G3MPS2  

PDB

4O9D     E-value=0.00022994,     Score=106

KEGG

101744129    K23314 telomerase Cajal body protein 1 | (RefSeq) telomerase Cajal body protein 1

GO

GO:0003743   GO:0034512   GO:0015030   GO:0030576   GO:0005515   GO:0016042   GO:0016298   GO:0008152   GO:0016787   GO:0042626   GO:0016887   GO:0005622   GO:0006810   GO:0003824  

Subcellular location

  

Length:

441

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00262

Exp number, first 60 AAs:

0.00059

Total prob of N-in:

0.00879

outside

1  -  441

 

 

Pi

271.562107

Theta

224.612663

Tajima's D

0.022848

CLR

0.113004

CSRT

0.372631368431578

Interpretation

Uncertain