Gene

KWMTBOMO11021  Validated by peptides from experiments

Annotation

ribosomal_protein_S19_[Bombyx_mori]

Location

Bomo_Chr18(-):10112709-10118148      View in EpiBrowser

Full name

40S ribosomal protein S19a      

Location in the cell

Cytoplasmic   Reliability : 2.134 Mitochondrial   Reliability : 1.647

CDS

ATGCGTTCCGTCACAGTAAAGGATGTTGAACAAGACAAGATTGTTAAAACTGTCGCTGCTCACTTAAAAAAAACGGGCAAAGTCAAGGTACCTGAGCACATGGATCTTGTAAAGACAGCTCGCTTCAAAGAGCTGGCTCCGTATGACCCTGATTGGTTCTATGTGCGTTGTGCTGCCATCCTTCGTCATATTTACATTCGCTCACCTGTTGGAGTCAAGACTGTCACCAAGATCTTCGGTGGGCGCAAACGTAATGGAGTTACACCTTCACATTTCTGCAGGTCATCAGGCAGTATTGCACGCAAGGCTTTGCAATCGTTGGAGGCATTGAAGCTTGTTGAGAAAGTTCAGGACGGTGGTCGCATTCTCACCACACAAGGTAGACGAGACCTTGACAGAATCGCTGCCCAGGTTCGTCTAAAGGCCAAGCAGCAGGCTAAGCAACAAGTCATTGTACTTTAA

Protein

MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQQVIVL

Similarity

Belongs to the eukaryotic ribosomal protein eS19 family.

Keywords

3D-structure   Complete proteome   Reference proteome   Ribonucleoprotein   Ribosomal protein  

Feature

chain  40S ribosomal protein S19a

Uniprot

Q5UAM3   D1LYJ8   Q962R0   G0ZED5   A0A0K8T6Z6   Q75NG5   + More
A0A1E1W0A3   I4DMQ2   I4DIW4   E7DZ16   A0A212F9G1   S4NR04   A0A0L7KQZ8   A0A0N0PF16   Q5MGK0   A0A1Y1LJX3   E2A6J0   A0A195CBS6   A0A195DLZ6   F4WN53   A0A195FRT7   A0A158NA91   A0A151X7K1   A0A0J7L9X8   E2A5Q9   A0A195EKY9   A0A195B6P7   A0A195ETN6   A0A158NIK7   A0A151XBF8   A0A146KLK3   A0A195C5S6   A0A0J7KVT8   A0A154NZM4   A0A0L7QNW9   A0A0N0BKT1   E2C1H6   V9IHI6   H9KEI2   A0A2A3E588   D1M7Z7   A0A232FAR9   K7IPS2   E9IUW6   V5H137   E9IH81   A0A3L8D4C6   A0A026VXV4   Q4GXP6   A0A067RAZ4   Q6EUY0   Q4GXP7   A0A0X8NXW8   R4UM42   A0A1B6DFQ3   Q4GXP8   F4WCJ5   R4WNS0   A0A0C9RJ71   A0A1D1Z9T9   J3JT62   A0A1W4WPL2   E0W150   A0A1B6HJT9   A0A1B6FS24   A0A1B6L5H9   A0A0K8SKF4   A0A0A9VVJ7   A0A146M450   A0A2P8ZER6   B8RIT2   B0WBI4   R4FLX6   A0A226EQ47   A0A336LMU7   A0A1L8EF29   A0A0V0G535   A0A336L140   A0A1B0CX28   A0A139WIZ5   Q6XHW6   A0A1W4V6R5   B3MRC5   B3NVJ8   E2QD65   Q6XIU5   P39018   B4JK84   A0A1L8DRX7   A0A1I8PFU6   A0A0M4EUZ4   B8RIT3   B4R5V4   A0A1A9WLC3   A0A1A9X815   A0A1A9UU56   A0A1B0ALW5   A0A1A9ZLJ6   B4NEV6  

Pubmed

14668217    22651552    26354079    22118469    23622113    26227816    + More
16023793    28004739    20798317    21719571    21347285    26823975    28648823    20075255    21282665    30249741    24508170    24845553    23691247    22516182    23537049    20566863    25401762    29403074    18362917    19820115    14525923    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    8367309    12537569    23636399   

EMBL

AY769335    AAV34877.1    GU084272    ACY95305.1    AF400216    ODYU01007879    + More
AAK92188.1    SOQ51036.1    JF265013    AEL28844.1    GBRD01004508    JAG61313.1    AB176644    BAD15113.1    GDQN01010639    JAT80415.1    AK402570    BAM19192.1    AK401232    KQ459604    BAM17854.1    KPI92485.1    HQ424719    ADT80663.1    AGBW02009596    OWR50349.1    GAIX01014642    JAA77918.1    JTDY01006780    KOB65697.1    KQ459718    KPJ20237.1    AY829786    AAV91400.1    GEZM01053809    JAV73939.1    GL437132    EFN70947.1    KQ978009    KYM98150.1    KQ980734    KYN13861.1    GL888235    EGI64322.1    KQ981305    KYN43002.1    ADTU01010078    KQ982446    KYQ56347.1    LBMM01000123    KMR04845.1    GL437023    EFN71256.1    KQ978739    KYN28898.1    KQ976582    KYM79859.1    KQ981979    KYN31272.1    ADTU01001812    KQ982327    KYQ57702.1    GDHC01021185    JAP97443.1    KQ978292    KYM95523.1    LBMM01002775    KMQ94379.1    KQ434786    KZC05126.1    KQ414843    KOC60332.1    KQ435695    KOX80864.1    GL451937    EFN78152.1    JR047851    AEY60525.1    KZ288392    PBC26339.1    GU120421    ACY71271.1    NNAY01000577    OXU27580.1    GL766058    EFZ15637.1    GALX01000544    JAB67922.1    GL763190    EFZ20066.1    QOIP01000013    RLU15352.1    KK107796    EZA47679.1    AM048977    CAJ17211.1    KK852624    KDR19934.1    AJ783891    CAH04339.1    AM048976    CAJ17210.1    KC507316    AHB12439.1    KC632351    AGM32165.1    GEDC01012770    JAS24528.1    AM048975    CAJ17209.1    GL888070    EGI68175.1    AK417311    BAN20526.1    GBYB01013272    JAG83039.1    GDJX01004283    JAT63653.1    APGK01055813    APGK01055814    APGK01055815    BT126418    KB741270    KB632390    AEE61382.1    ENN71397.1    ERL94449.1    DS235866    EEB19356.1    GECU01032767    JAS74939.1    GECZ01016757    GECZ01015105    GECZ01002404    JAS53012.1    JAS54664.1    JAS67365.1    GEBQ01020995    JAT18982.1    GBRD01012012    JAG53812.1    GBHO01045366    JAF98237.1    GDHC01004420    JAQ14209.1    PYGN01000078    PSN54978.1    EZ000356    GFDL01011205    ACJ64230.1    JAV23840.1    DS231879    EDS42423.1    ACPB03018168    GAHY01001213    JAA76297.1    LNIX01000002    OXA59174.1    UFQS01003022    UFQT01003022    SSX15062.1    SSX34443.1    GFDG01001462    JAV17337.1    GECL01003687    JAP02437.1    UFQS01001271    UFQT01001271    SSX10060.1    SSX29782.1    AJWK01033162    KQ971338    KYB27801.1    AY232066    AAR10089.1    CH902622    EDV34330.1    CH954180    EDV46390.1    AE014298    AAN09413.1    AHN59808.1    AHN59809.1    AY231734    CM000162    AAR09757.1    EDX01940.1    X73153    AF216206    AY118868    CH916370    EDV99986.1    GFDF01004960    JAV09124.1    CP012528    ALC48997.1    EZ000357    ACJ64231.1    CM000366    EDX18104.1    JXJN01000167    CH964239    EDW82275.2   

Proteomes

UP000053268    UP000007151    UP000037510    UP000053240    UP000000311    UP000078542    + More
UP000078492    UP000007755    UP000078541    UP000005205    UP000075809    UP000036403    UP000078540    UP000076502    UP000053825    UP000053105    UP000008237    UP000005203    UP000242457    UP000215335    UP000002358    UP000279307    UP000053097    UP000027135    UP000019118    UP000030742    UP000192223    UP000009046    UP000245037    UP000002320    UP000015103    UP000198287    UP000092461    UP000007266    UP000192221    UP000007801    UP000008711    UP000000803    UP000002282    UP000001070    UP000095300    UP000092553    UP000000304    UP000091820    UP000092443    UP000078200    UP000092460    UP000092445    UP000007798   

PRIDE

Q5UAM3    E2QD65    P39018   

Pfam

PF01090   Ribosomal_S19e        + More
PF15901   Sortilin_C
PF00058   Ldl_recept_b
PF00041   fn3
PF00057   Ldl_recept_a
PF15902   Sortilin-Vps10
PF09404   C12orf66_like

Interpro

IPR018277   Ribosomal_S19e_CS        + More
IPR036390   WH_DNA-bd_sf       
IPR001266   Ribosomal_S19e       
IPR038111   Ribosomal_S19e_sf       
IPR023415   LDLR_class-A_CS       
IPR006581   VPS10       
IPR011042   6-blade_b-propeller_TolB-like       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR031777   Sortilin_C       
IPR013783   Ig-like_fold       
IPR000033   LDLR_classB_rpt       
IPR036055   LDL_receptor-like_sf       
IPR031778   Sortilin_N       
IPR002172   LDrepeatLR_classA_rpt       
IPR018544   C12orf66-like       
IPR038060   C12orf66-like_central_sf       

SUPFAM

SSF46785   SSF46785        + More
SSF57424   SSF57424       
SSF49265   SSF49265       
SSF158548   SSF158548       

Gene 3D

1.10.10.2700     2.120.10.30     2.60.40.10     4.10.400.10     1.10.3450.30    

CDD

cd00063  FN3
cd00112  LDLa

ProteinModelPortal

Q5UAM3   D1LYJ8   Q962R0   G0ZED5   A0A0K8T6Z6   Q75NG5   + More
A0A1E1W0A3   I4DMQ2   I4DIW4   E7DZ16   A0A212F9G1   S4NR04   A0A0L7KQZ8   A0A0N0PF16   Q5MGK0   A0A1Y1LJX3   E2A6J0   A0A195CBS6   A0A195DLZ6   F4WN53   A0A195FRT7   A0A158NA91   A0A151X7K1   A0A0J7L9X8   E2A5Q9   A0A195EKY9   A0A195B6P7   A0A195ETN6   A0A158NIK7   A0A151XBF8   A0A146KLK3   A0A195C5S6   A0A0J7KVT8   A0A154NZM4   A0A0L7QNW9   A0A0N0BKT1   E2C1H6   V9IHI6   H9KEI2   A0A2A3E588   D1M7Z7   A0A232FAR9   K7IPS2   E9IUW6   V5H137   E9IH81   A0A3L8D4C6   A0A026VXV4   Q4GXP6   A0A067RAZ4   Q6EUY0   Q4GXP7   A0A0X8NXW8   R4UM42   A0A1B6DFQ3   Q4GXP8   F4WCJ5   R4WNS0   A0A0C9RJ71   A0A1D1Z9T9   J3JT62   A0A1W4WPL2   E0W150   A0A1B6HJT9   A0A1B6FS24   A0A1B6L5H9   A0A0K8SKF4   A0A0A9VVJ7   A0A146M450   A0A2P8ZER6   B8RIT2   B0WBI4   R4FLX6   A0A226EQ47   A0A336LMU7   A0A1L8EF29   A0A0V0G535   A0A336L140   A0A1B0CX28   A0A139WIZ5   Q6XHW6   A0A1W4V6R5   B3MRC5   B3NVJ8   E2QD65   Q6XIU5   P39018   B4JK84   A0A1L8DRX7   A0A1I8PFU6   A0A0M4EUZ4   B8RIT3   B4R5V4   A0A1A9WLC3   A0A1A9X815   A0A1A9UU56   A0A1B0ALW5   A0A1A9ZLJ6   B4NEV6  

PDB

4V6W     E-value=1.05278e-48,     Score=482

KEGG

692721    K02966 small subunit ribosomal protein S19e | (RefSeq) RpS19; ribosomal protein S19

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:0005794   GO:0016021   GO:0140007   GO:0061462   GO:0042149   GO:1904262   GO:0034198   GO:0022627   GO:0002181   GO:0022626   GO:0005622   GO:0042626   GO:0016887   GO:0006810   GO:0003824  

PANTHER

PTHR11710   PTHR31581  

Subcellular location

Golgi apparatus  

Length:

153

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02838

Exp number, first 60 AAs:

0.01215

Total prob of N-in:

0.34039

outside

1  -  153

 

 

Pi

200.254473

Theta

188.19263

Tajima's D

0.690222

CLR

0.489012

CSRT

0.566671666416679

Interpretation

Uncertain