SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO11020
Annotation
PREDICTED:_sortilin-related_receptor-like_isoform_X2_[Papilio_xuthus]
Full name
Sortilin      
Location in the cell
Extracellular   Reliability : 1.213 Nuclear   Reliability : 1.323 PlasmaMembrane   Reliability : 1.008
 

Sequence

CDS
ATGACTGTGATCAATAGATTTACTGAAAATGAAAGTAGCGGATCTTACCGAAGAAAACGTGAAGCTACCACAGTGCAGCCCGTACAAGGAAACGTTAGTACACAGATTACTCATCTGAATGACAGTCATCAACAGCTTATGGTCCACTGGGTTGGAGAAGGCTCTAATGTAATAATTTGCCTTGCCAGAGATTCTATTCCTAGGAACAAAGGAGTGATTTCACCATCAGCACTTTTTATATCATATGATTATGGCAAAACCTTTATGAATAAAACAGAAAGTTTTAAACTTGGTGATACATCCAATAATGGTTATGCTCAGCTTGATAAATTCTTCAATCACCCTAAATATCCAGAATTTTGTGTATTTGTGGATTCCACAAATAAGAAGTTATATTATACCAGCGATAACGGGCGAAATATACATCGATCCGACTTGACCTTCTCCCCCAGCGAGCTTGCTTTTGATGAAGAGTTCCCTGATAAGTATGTCATTTTGGACAAAGTCGACATTAACAGAAAGCTGTATCTAACACTAGATGGAGGGAAAACATTTAAAATGATCCAAAGTTTTGTGAAGACCTTCGTCTGGTCGTCTGGCCCTGGATTCTCCAAAGTATTCTATGTAGAGCGATGGAAGCCAGATGGAACGAGTGCTGTTTTGAGCGCAAGCGATCCCACAGATCTTATCAATGCTGAGGTGCTGTTTGAAGAGACGAAGGATTTCCAGGTGAAAGGGGATTACATGTTCGCGACGAAACAGTCGAAAGAGAAAAACACGCTTCATCTGTACATTTCGCATCAACGAGGACCGTTCTACAAAGCCGAATTCGAAACCGAATTGAATCTCAGGAAGTTCCATATCGCGGACGTAACCGATTCACGTATATTCGTCTCTGTCATGCACACGGATACGTTAGCGAACCTGTACGTGTCGGAGATCGGTAGAAATTTCACCCAATATAATTTCGTTTTGAGCATGGAACAGATCCTATGCTATTTCCCGGAAGGAAACTGGAAGGACAGTTGGCTTGAGGACGTCACAGAGGATCCGTTCACGGATTTGTATCGAGTCGAAGGCTTAAAAGGAATCTACATAGCGTCGAGGGTCGATTCTAAAGCGCCCGTTGCTAATGTGGGCCCCGAACATTTGATATCGCTGATCACTTTCGATCACGGTGTCACTTGGTCTCCGATCAAACCGCCAACTGAAGATGAAAATGGAAAGCCACTGAACTGCCACATCGAAAACTCGTGCAGTCTACATTTATGCCAGAAATTCAGTCAACTGTATCCAGTTACAAGATCGGCGAGTATAATGAGTTCGAAGTCTGCACCCGGCATCATAATGGCGACTGGTGTTATGGGAAAATCTTTAAAGGGCATCCCAGGCGTATATCTCAGCAGAGATGCTGGGTTAACATGGAAGAGGATCTTGAAAGACTACTACTTCTTTAACTACGGAGATCACGGAGGTGTTTTAGTTGTCGTCAAATATTTCAAATCACGAGGCGAAACACGACGTATACTTTATTCGACAAACGAAGGCATCGAGTGGAATTCTTATCAGTTCAATGCCGATGACCTTCGGATCTACGGGCTGATGACAGAACCCGGCGAAAATACCACGACGTTTACAATGTTCGGTTCAGCGAACGATCAACATCAGTGGATCATTATCACTTTAGACTTGAGAAACACTTTTGCTCGCAACTGTACGAACGAGGACTACAAGTTCTGGTCGCCTTCGCCGCCGAATTCGTCCGTGTCGTGTGTGCTCGGCTCGAGGAATATCTTTCAGCGACGCCTCCCGCACACGAACTGTTACAACGGAATCGATTACCAAAGACCCGTCAGGAGGGAAGTCTGCGAATGTAGCCGTCGAGACTTCGAATGCGATTTCGGTTTTATGTTATCCGGCGAGGAGTGCATTCAGAACAAGTCGGTGAAGTTCGATCCTTACGCCGTCCCCGTGTACTGTCGCCCCGGCCAGCACTACAAGCGGACCAAGGGCTACAGGAAAATAGACGGTGACGTGTGCACGATCAGTGGATACACGCCCTACGCCTCAGATATCATACCGTGTCCCCTTGAAGAACCGGTTGAGTTCATGTTAGTAGCACTTAGAGACAAAATTGCCCGCATCGATTTATCCGACAATACAACCATTTACCCCGTCGAAGGACAAAATAACATAGTCGCCATAGAATTCGATTTGAAGAACAATTGTATTTACTGGGGCGACATAGAACTAGATAAGATCAGCAGGCAGTGTTTCAATAACGGCACAACGCAAGAGGTCGTCGTCGACACGGACTTAGCGAGCATCGAAGGCATGGCCCTCGATTGGATCTCGAACGTTCTGTTCTTCGTGGATGGATCGAGAAAGAAGATTGAGGCAGTGCGCACTGATTTGACGAACGAAGGCAGAATGAGAGTCACGATCCTGGACAATAATGTGCTGACGAAGCCTAGAGGTATTGCGGTGCATCCCAGAGCGGGATATTTGTTCTGGACCGACTGGGATAGGCACGCTCCGTCGGTTTCTAGGTCGCATCTCGACGGCACACACGTGAAGAAGCTTTTCGGGAAGCCCATAGTTCAATGGCCGAACGGCTTAACGATCGATCAAATGTCGGAAAGGATTTATTGGGTTGACGCCATGGAGGATTACATCGCGAGCTCGGACTTGAACGGGAGATATTTCAGGAGGATCTTATGGGACGACACTAAGGTCATACATCCGTTTGCCGTGGCCGTTTTAAAGGACAAGGTGTATTGGGACGATTGGAAAGCGAAATCTATATTCATAGCGGACAAAGATACCGGAGCGAACGTCATCACGATCAATAACTCGTTCTCCGGTTTGATGGACTTGAAGGTGTTTGCGCACTTCGTCCAGCACGGCAGCAACGCTTGCTCGTACAAGAACACGAGCTGCGACGCCCTGTGCCTGGGAGCGCCGGGCAACAGTTACAGCTGCCTTTGTCCGGACGGCTTCAAGAACGTGAACGGCACGTGCGTGTGTCCGGATAACTCGAAGCCGTCGGTCAACATGACATGCCCGATTGCGCCAGGCGCTACTTGCGGACCGGAACAATTCACATGTAAGAACGCGAACAAGTGCATACCTATATCGTGGCGGTGCGACGCGAACAACGACTGCGGAGACCTCTCGGATGAGATGGGCTGTCTGTGCGCGCCCCCGATGATCCCCTGCGACACCAGCAAGTGCTACATGCCGCACTGGAAATGCGACGGAGAGATCGACTGTCCCGACATGAGCGACGAGAAAGATTGCGCCGTTCTCCATTGCAACGAAAGTCAGTTCCAATGCGGCAATGGTCATTGTATCGAGAAACGATGGGTCTGCGACGGCGATAATGATTGTCAAGACGGCTCGGACGAGCGTAATTGCATGGTACACATAAAGCATTCGGAAATAACGCCGTGCTCGAACAACGACTTCGCGTGCGGCAACGAGTCCGGCACGTGCCTGCCCAACTCGTGGGTGTGCGACGGCGAGCGCGACTGCCCCGAGGGGACCGACGAGGAGCCGGAGCGCTGCAAGGACTCCACGTGCGCGCCCAACATGTTCCGGTGCCCCAGCGGGAAGTGCATCTTCAGATCCTGGGTTTGCGACGGAGAAAACGATTGCACGGACATTGAAAAATCAGACGAACAGAATTGCACGAACACCGGACGTTCCAAGTTCCTGCCGGACCCCGCCGCGGACAGACCGATATTCCCCGCGAACAAGACCTGCCTCAACTGGATGTATAAGTGCGAGAACGGTAACTGCATCCCGGACTGGTGGAGGTGCGATAAGATTAACGACTGCGGAGACAACTCGGACGAGAGCGGATGCGGCATGGTCGTGCCGGAGAGGAAGCCCGTCATATCCGTTAAAGTTCTGCCGAAATGCGCCAAGACCTATTTCACGTGTCCGAATGACGTGTGCATTCCGCTGTCGTGGGTGTGCGACGGCATGGAGGACTGCGCGGGCGGCAGCGACGAGCTCGGCTGCGAGCGCCACGCCGCCGTCACGCCGCGCCCCGCCCCGCGCTGCCCCGCCGACCTCACGCCGTGCGCCGACGGCCGCGCCTGCATCAGCGACCTGCTGCTCTGCGACGGCACGCCGCACTGCGCCGACGGAAGCGACGAGGCGCACTGCCCCGGACGGACTGAACAAAACCCACCGATGGAATGTCCGCCGGGCTACATACAGTGCGACCACAGCCGCTGCGTCGCTCAGGCAGCGGTGTGCAACGGCCGAGAAGATTGTTACGACGGAACCGACGAACAGAACTGTTTCAGTAAAGACAACCGCGCTTATCAGTTTCTCAGTATCGGAGTCGATCAGTCTTCAATAAATTCATCGAGTTTCCTCGTGTCGTGCTGGATGCCACAACAGAAGACCGTCGTCTACAATTTCCTGCCGTCTATATCTGAAGTTGGCGACGGTAAATGGATGAACATGTCCTGGACAAATGACAGTGTTTATAGGTTTACAAATCTGAAGCCATTCACGAACTATAATATAACGTTTTACATATGGGACAGCAGATTGAATAAGACATATGCGTCAAGTAAATACGTGAACACGACTACAGGCGAAGGAATACCTTCGCCGCCTCTGAGAGTGACGGTACGTCAGAACATCGGGAGCCGCGTGGAGGTGCTGTGGGACCGGCCCGAAGTACCCAACGGGGTCATACGCTACTACAAGCTGTACTACTCGCCGCCCGACCCGCCCATCGTGAAAATCATTCACGCCAATGACACGAAAACACAATCGGTCATATTCAAAGGATACTTCATGCCTAAGACGAACTATTCGTTCTGGGTAAAATCGCTGAACAGCCTATACACATCGAACTCGTCCGAAGTGATGTACCTGACGTTCGACGACGGCGGCGACGTGGACGACCTGGCCAACGTCAGCATGGCGCGCCTCAACTCCAGCGCCGTGTACCTCGAGTGGCACAAGATCCGCGGGGTCGAGGGCTACCTCGTGCAGGTCCGGCTGCCCATGGACTACGCGAAACGTGACCCGGTCAAGATACAAACGAATAACATTACGATAACGGATCTACCACCGGGCGTCGTTCTGAACATCGACATACAAGCTTACAAAGCGTCGATATACGGCGAACCATTCACGCTGCCGTTAAAAACCGAAGGCGAACCAGACGAGACGCTGAACCTGACCGCAATGCTGCTAAAGGAAAAACGCACCTCCGTACATCTGGCCTGGGACCCGCCCAAAGGGGAGCGATACAAAAATAAGGAACTGTTATACGAGGTGCATTATAGTAATGTCATAAGAAGATTAAACCCAGGAGATATGTCGAACGATACAAAGATTATTACGAAGAACACTAGTGTCCAAATAGATAATTTACATGAGTGCGAGAGCTATTCTTTCACTGTTGGCCTCCTCGGGGGACCTTTGGCTCGAATTATCGAAATCGTAACAAGAGAGAATGCCAAAGCACCAGTAAAGAACTTAATCGCTGTTTACGATGATAAAAACGCCGAAATGAAGATCACTTGGGATGCGAACTGTGATGCCCTACGAAACCCAGTTACATATTTGCTGAAAATAACAGAAGAAACAAGGGATAGGGTTAGTCGATATGAATTGACTCCTTCCACGGTACCGATCTTCAAACATGTAATACGCAACGTACCCGTCGGCGGACGATACAACATTTGTGTCAAGGCGGATGTGGAGGGTGCTGTGGAGACGTGCACGCGCGCCCGCAGCCGCCCCGTGCCGCCGCCGGTGGGCGTGGCCGCCTTCCTGGCCCCCACCGGACACCTGCTCGTCTCCTGGGACGATCGACCTCAGCACGAGCATCCGGAACATAAACACAAATACGAGATCATTGTATCGAAGAAGGAAATACCCGAGGATCTAATTAACCCGTCCCCCGACATGACGACGATGACCGCCGAGTTCTCTCCGCTGCTGATGTCGGCGCCGCGGGGCAGTGGCACGCTGTACGTGGGCGTGCGGGCCCTAACTGAAGATGGGTACTGCAGTGACCTCAGCGAGATGCCGACCTTGAAAATGGAAGGCGAGGCGGAGGAGCCTGTGTCGGCGCTGTCGGCGGTGTGGTGGGGGGCGGGCGCGGCGCTGGCGGTGGGCGCGGTGCTGGGCGGCGCGCTGCTGCACCTGCTCGTGCGGAACCGCCGCCTGGCGCGCTCCTTCCTGCGCTTCACGGCGCAGTCGCCGCACTCGCCGCACACGCCGCGCTACGACAGCCGCCGCGGACACGCCACCATCACCGACCAAGATGATGACGACGTTCCTCCGATCCAAGGCTTCTCGGACGACGAGCCGCTCGTGATCGCTTGA
Protein
MTVINRFTENESSGSYRRKREATTVQPVQGNVSTQITHLNDSHQQLMVHWVGEGSNVIICLARDSIPRNKGVISPSALFISYDYGKTFMNKTESFKLGDTSNNGYAQLDKFFNHPKYPEFCVFVDSTNKKLYYTSDNGRNIHRSDLTFSPSELAFDEEFPDKYVILDKVDINRKLYLTLDGGKTFKMIQSFVKTFVWSSGPGFSKVFYVERWKPDGTSAVLSASDPTDLINAEVLFEETKDFQVKGDYMFATKQSKEKNTLHLYISHQRGPFYKAEFETELNLRKFHIADVTDSRIFVSVMHTDTLANLYVSEIGRNFTQYNFVLSMEQILCYFPEGNWKDSWLEDVTEDPFTDLYRVEGLKGIYIASRVDSKAPVANVGPEHLISLITFDHGVTWSPIKPPTEDENGKPLNCHIENSCSLHLCQKFSQLYPVTRSASIMSSKSAPGIIMATGVMGKSLKGIPGVYLSRDAGLTWKRILKDYYFFNYGDHGGVLVVVKYFKSRGETRRILYSTNEGIEWNSYQFNADDLRIYGLMTEPGENTTTFTMFGSANDQHQWIIITLDLRNTFARNCTNEDYKFWSPSPPNSSVSCVLGSRNIFQRRLPHTNCYNGIDYQRPVRREVCECSRRDFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRTKGYRKIDGDVCTISGYTPYASDIIPCPLEEPVEFMLVALRDKIARIDLSDNTTIYPVEGQNNIVAIEFDLKNNCIYWGDIELDKISRQCFNNGTTQEVVVDTDLASIEGMALDWISNVLFFVDGSRKKIEAVRTDLTNEGRMRVTILDNNVLTKPRGIAVHPRAGYLFWTDWDRHAPSVSRSHLDGTHVKKLFGKPIVQWPNGLTIDQMSERIYWVDAMEDYIASSDLNGRYFRRILWDDTKVIHPFAVAVLKDKVYWDDWKAKSIFIADKDTGANVITINNSFSGLMDLKVFAHFVQHGSNACSYKNTSCDALCLGAPGNSYSCLCPDGFKNVNGTCVCPDNSKPSVNMTCPIAPGATCGPEQFTCKNANKCIPISWRCDANNDCGDLSDEMGCLCAPPMIPCDTSKCYMPHWKCDGEIDCPDMSDEKDCAVLHCNESQFQCGNGHCIEKRWVCDGDNDCQDGSDERNCMVHIKHSEITPCSNNDFACGNESGTCLPNSWVCDGERDCPEGTDEEPERCKDSTCAPNMFRCPSGKCIFRSWVCDGENDCTDIEKSDEQNCTNTGRSKFLPDPAADRPIFPANKTCLNWMYKCENGNCIPDWWRCDKINDCGDNSDESGCGMVVPERKPVISVKVLPKCAKTYFTCPNDVCIPLSWVCDGMEDCAGGSDELGCERHAAVTPRPAPRCPADLTPCADGRACISDLLLCDGTPHCADGSDEAHCPGRTEQNPPMECPPGYIQCDHSRCVAQAAVCNGREDCYDGTDEQNCFSKDNRAYQFLSIGVDQSSINSSSFLVSCWMPQQKTVVYNFLPSISEVGDGKWMNMSWTNDSVYRFTNLKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRQNIGSRVEVLWDRPEVPNGVIRYYKLYYSPPDPPIVKIIHANDTKTQSVIFKGYFMPKTNYSFWVKSLNSLYTSNSSEVMYLTFDDGGDVDDLANVSMARLNSSAVYLEWHKIRGVEGYLVQVRLPMDYAKRDPVKIQTNNITITDLPPGVVLNIDIQAYKASIYGEPFTLPLKTEGEPDETLNLTAMLLKEKRTSVHLAWDPPKGERYKNKELLYEVHYSNVIRRLNPGDMSNDTKIITKNTSVQIDNLHECESYSFTVGLLGGPLARIIEIVTRENAKAPVKNLIAVYDDKNAEMKITWDANCDALRNPVTYLLKITEETRDRVSRYELTPSTVPIFKHVIRNVPVGGRYNICVKADVEGAVETCTRARSRPVPPPVGVAAFLAPTGHLLVSWDDRPQHEHPEHKHKYEIIVSKKEIPEDLINPSPDMTTMTAEFSPLLMSAPRGSGTLYVGVRALTEDGYCSDLSEMPTLKMEGEAEEPVSALSAVWWGAGAALAVGAVLGGALLHLLVRNRRLARSFLRFTAQSPHSPHTPRYDSRRGHATITDQDDDDVPPIQGFSDDEPLVIA

Summary

Feature
chain  Sortilin
EMBL
KQ459718    KPJ20237.1    KQ459604    KPI92486.1    ODYU01007879    SOQ51035.1    + More
KQ435007    KZC13483.1    KQ981979    KYN31391.1    KQ435796    KOX73556.1    NEVH01027073    PNF13851.1    KQ414860    KOC60070.1    GL888479    EGI60419.1    ADTU01001618    KQ976398    KYM92781.1    GL453780    EFN75522.1    KY563384    ARK19793.1    KQ980612    KYN15089.1    KQ982585    KYQ54371.1    JR041529    AEY59463.1    PNF13850.1    KQ977259    KYN04525.1    GBYB01005049    JAG74816.1    GL442629    EFN63219.1    QOIP01000009    RLU19126.1    GEZM01051492    JAV74849.1    KZ288193    PBC34013.1    KK853137    KDR10799.1    NNAY01000039    OXU31670.1    KQ971338    EFA02193.1    KQ770827    OAD52593.1    ACPB03008432    ACPB03008433    ACPB03008434    CH477362    EAT42645.1    GFDF01007004    JAV07080.1    GFTR01008938    JAW07488.1    GFDF01007445    JAV06639.1    KK107519    EZA49376.1    AJWK01002875    GBBI01003689    JAC15023.1    GECZ01012836    JAS56933.1    GFDL01012134    JAV22911.1    GFDL01012057    JAV22988.1    GFDL01012091    JAV22954.1    GFDL01012107    JAV22938.1    GFDL01012070    JAV22975.1    GFDL01012104    JAV22941.1    GFDL01012146    JAV22899.1    DS231900    EDS44828.1    GANO01000665    JAB59206.1    DS235286    EEB14426.1    JXUM01047049    JXUM01047050    JXUM01047051    KQ561502    KXJ78372.1    GDHC01016366    JAQ02263.1    AXCM01002394    AXCN02001762    APCN01003434    CVRI01000021    CRK91674.1    AAAB01008823    GGFJ01000077    MBW49218.1    GGFK01000644    MBW33965.1    KB632433    ERL95566.1    ADMH02000270    ETN67181.1    GGFM01000913    MBW21664.1    ABLF02036271    ABLF02036277    APGK01046964    APGK01046965    APGK01046966    KB741073    ENN74370.1    GFXV01002743    MBW14548.1    GGFL01002493    MBW66671.1    GGMS01009273    MBY78476.1    GDIQ01003568    JAN91169.1    GDIQ01034693    JAN60044.1    LRGB01002849    KZS06153.1    GDIP01207058    JAJ16344.1    GDIP01202807    JAJ20595.1    GL732525    EFX89061.1    GDIP01066175    JAM37540.1    GDIQ01053791    JAN40946.1    GDIP01074923    JAM28792.1    GL762556    EFZ21219.1    GDIP01046781    JAM56934.1    GDIP01234358    JAI89043.1    GBHO01027965    JAG15639.1    GDIP01115072    JAL88642.1    GFDL01011866    JAV23179.1    GDIP01080774    JAM22941.1    GDIQ01166693    JAK85032.1    GDIQ01094421    JAL57305.1   
Pfam
PF01090   Ribosomal_S19e        + More
PF15901   Sortilin_C
PF00058   Ldl_recept_b
PF00041   fn3
PF00057   Ldl_recept_a
PF15902   Sortilin-Vps10
PF00307   CH
PF00435   Spectrin
PF15410   PH_9
Interpro
IPR001266   Ribosomal_S19e        + More
IPR023415   LDLR_class-A_CS       
IPR006581   VPS10       
IPR011042   6-blade_b-propeller_TolB-like       
IPR003961   FN3_dom       
IPR036116   FN3_sf       
IPR018277   Ribosomal_S19e_CS       
IPR038111   Ribosomal_S19e_sf       
IPR036390   WH_DNA-bd_sf       
IPR031777   Sortilin_C       
IPR013783   Ig-like_fold       
IPR000033   LDLR_classB_rpt       
IPR036055   LDL_receptor-like_sf       
IPR031778   Sortilin_N       
IPR002172   LDrepeatLR_classA_rpt       
IPR000742   EGF-like_dom       
IPR018159   Spectrin/alpha-actinin       
IPR036872   CH_dom_sf       
IPR001715   CH-domain       
IPR001849   PH_domain       
IPR001589   Actinin_actin-bd_CS       
IPR041681   PH_9       
IPR011993   PH-like_dom_sf       
IPR002017   Spectrin_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR009030   Growth_fac_rcpt_cys_sf       
SUPFAM
SSF57424   SSF57424        + More
SSF46785   SSF46785       
SSF49265   SSF49265       
SSF47576   SSF47576       
SSF57184   SSF57184       
PDB
3WSX     E-value=1.76991e-131,     Score=1209

Ontologies

Topology

Subcellular location
Golgi apparatus  
Length:
2120
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.82244
Exp number, first 60 AAs:
0.00103
Total prob of N-in:
0.00057
outside
1  -  2039
TMhelix
2040  -  2062
inside
2063  -  2120
 
 

Population Genetic Test Statistics

Pi
251.583931
Theta
172.84295
Tajima's D
1.391941
CLR
0.203527
CSRT
0.75851207439628
Interpretation
Uncertain
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