Silkworm Genome Informatics Database

Gene

KWMTBOMO11005

Pre Gene Modal

BGIBMGA008523

Annotation

PREDICTED:_ATP-binding_cassette_sub-family_B_member_10?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr18(+):9248353-9277708 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.518 Mitochondrial Reliability : 1.289

CDS

ATGAAGTATTACACTAGCCAGATAGATGCACAAAAAAATGAAGAACCCATTGAAAATTTGAAAAATAAAACCACATTAGTCACGGGCAAGAAAATTAATGTAAAATTAAAAACTTCAGAACTAAAACGATTACTTGGACTGGCCGAACCTGAAAAATGGACATTAACTGGTGCCATTGGTTTCCTAATAGTGTCATCAAGTGTGACGATGGCCGTACCATTTTCCCTTGGCAAAGTACTTGATATAATATACAATAGTACAAGTGACTTAGCTGCTGCTAGAGAAAAGCTCGATGCATTATGTCTGATGCTCTGTGGGGTATTCTTAATAGGAGGCCTGTGTAACTTTGGAAGAGTTTACCTGATGTCCATATCTGGGCAAAGAATGACTCAGGCTCTCCGGAAACAAGTTTATGGTGCGATTTTAAAACAAGAAACGGCGTGGTTTGGAAGAACATCAACAGGGGAATTAGTTAACAGATTATCTGCAGATACACAGCTTGTGGGCCGTAATCTCAGTCAAAATGTTAGCGACGGCCTTAGGTCTTTGTTTATGGTTGGAGCTGGAACAGGAATGATGTTCTACATGTCGCCTTCATTGGCTTTGATCGGACTGTGTGTGGTACCGCCTGTTTCAATGTTGGCTGCCATATATGGACGGTTCGTCCGTGGGATCACAAGGGAGTTGCAAGATTCACTTGCGGAAACGAGCGAACTTGCTGAAGAAAAAATATCAAACATAAAGACTGTGAAAGCATTTAGCAAGGAGCCTAAGGAATGCGAATCTTATGCAAAGAGGATTGAAAATTTACTAAATTTGGCTTACAAGGAGTCATTAGCGGTCGGCAGTTTCTACGGTTTGACTGGCCTCGCGGGAAACACTATAATAATATTAGTTTTATATTACGGAGGAGGCATGGTGGCGACAGAGCAACTCACAGTCGGTAACTTGACATCGTTCCTACTGTACGCTGCGTATGTGGGGATCAGTATTGGTGGACTGAGTAGTTTCTACACGGAACTAAATAAGGGCATGGGAGCCGCGACCAGACTGTGGGAGATCATTGATAGGGAGCCCAAAATTCCTGTCACAGGAGGCTTAATACCGAAAGAGAAACCGAACGGCGAAATAATATTAGAAAAAGTACATTTCTCCTACAACGATGCGCCTCTAATACGAGGACTGGATCTTCATTTGAGACCCGGGAAGTCAGTTGCGCTTGTCGGTAGATCTGGCTGCGGGAAGAGCACCATAGCATCGCTTATATTGAGACTCTACGACCCGGATAAGGGTAGAGTTTTACTCGATGGAGTCGACATAAGGGAATTAGATCCGATGTGGTTGAGAAGTCTGATCGGCTACGTTGGTCAAGAACCGGTGTTGTTCAGTGGAACAGTCAAGGAAAATATTTTGTACGGAGCTTTAGATGAAAACGAAGAAGTACAAAATGAAAAGGACGAGCCAGCGTGGATGGTGGCAGCTCGCACTGCTCATCTGCACGAGCTAGTGACCGGCACCCGCCAAGGCTGGGACAGAGAGGTAGGCGCCGGCGGTAGTCAGCTGAGCGGGGGACAGAAACAAAGGGTGGCCATTGCACGGGCCATTGTTAAGAATCCGAAAATCTTGATCCTCGACGAAGCCACATCAGCGCTAGATACGTATTCGGAGTACTTAGTTGATAAAGCTTTAAAAGAGATCAGTAAGTCTAGAACGGTTCTGACCATAGCGCACAGGTTGAGCACGATACAGTCCGCGGACGAGGTCGCTGTGCTCGAGAATGGAGTTGTAGTTGAGACGGGACCTTACGCCGAGCTAGTAGCCAAACCGGACGGCCTCTTTAGGGAGTTGATAACGCATCAAACGTTTACCGCGAAATCGAGAGACAAAAAGGATATGCAGAAAAGCGTTTTGAGGAGGGACTTTGCTACACGTACCGCAACTGTGTCGGACAGTAAGTGCTTGAGTTCTCCGTGGGGTGAAATTCAAATTGGAAAAGAAACACTCACGGATCACGTCTTCGGTGAGGTGGAGTCATGGGCGGACAAACCATCTGTGACTTGCGGCTCATCGGGTCGTTCATACGACTACGGTATGATGCGGATGATGGTGGAACGTTGCGCCAATGCTCTCGTCGGTCATCTGAAAATGAAGCCAGGCGAGAAAATAGGCCTTATCCTGCCGAACATTCCCGAATTTGTCGTCCTCATCCATGGTGCTATGAAGGCGGGACTTGTGGTGACATTTGCGAATCCTCTGTACACTGCAGTTGAAATACAACGGCAGTTCAATGACTGTGGCGTGAAAGCAATAGCCACTATTGAGATGTTCATGCCGGTGGCCCAGGAAGTCAGCAAGTCACTGAAAGATTACAAGGGAACCATTTGGGTTGGTGGCGAAGATGATAAAGCAAAAGGTATCCACGGCCTAAGGTCATTGTTAATGGCGGATCACAAAGCGGATCTTCCCACATTGAACTGCGACGATGTGTGTTTGATACCGTACTCCAGCGGTACGACTGGAATGCCCAAAGGCGTCATGCTCACTCATAAGAACCTCGTGTGCAACTTAAAACAAGTCAAGTGCCCTGAAATGATGAAGGATGGTGTTGTGAAAGGTAAAGATGAGGTTGTTCTAACTGTTCCCCCGTTCTTCCATATTTACGGTTTCAACGGTATACTGAACTACAATCTTAGTCTTGGTTACCACATCGTTACTATGCCTAAATTTACTCCGGACGATTACATCAAGTGCTTAGTGGAACACGAACCGACCACACTGTTCGTGGTGCCATCGCTGTTGGCGTTCCTCGCGACTCATCCACTGGTGAAGAAGAGTCACCTTCAGTCCATTAAGATTATTATGGTCGGAGCGGCTCCCACCACAGACGCCATGATGGAGAAATTCTTGCTTAAGTGCGAGAAAACTAAAGATGATATCCGACTTTTGCAAGGGTACGGAATGACAGAGAGTTCTCCCGTGACTCTATTGACTCCGTTCGACTACCCTTACGGTAAGGTCGGCTCGGTCGGTCAACTAGTCCCCAGCACTCAGGCTAAAATCGTATCGCTGACCGATGGCGAAATGTTGGGGTCTCACAAGTCTGGAGAGTTATGGCTCAAAGGGCCTCAGGTGATGAAAGGCTATTGGAACAATGAAGCAGCGACCAAAGAGACTGTGGACAGCGACGGGTGGCTACACACCGGCGACGTTGCTTATTATGATGAGGATTATTATTTCTACATTGTTGACCGCACGAAAGAACTCATAAAAGTCAAAGGCAATCAGGTGTCACCAACTGAAGTGGAAAATGTTATATTGGAACGGCCCGAAGTAGCAGATGTGGCAGTCGTTGGCATTCCAGACCCTCTTGCTGGAGAACTACCTAAAGCCTTTGTAGTCTTGAAATCAAATCACAAACTAACAGAGAAAGAGGTTTATGATACAGTAGCACAAAAACTCACAAAGTACAAGCATCTCGAGGGTGGTGTAGTGTTTATGGATGCCATCCCAAGGAATGCTGCCGGAAAAATAATGAGAAACGAACTAAAAGTTTTAGGAGGAAAATCGAAACATTAA

Protein

MKYYTSQIDAQKNEEPIENLKNKTTLVTGKKINVKLKTSELKRLLGLAEPEKWTLTGAIGFLIVSSSVTMAVPFSLGKVLDIIYNSTSDLAAAREKLDALCLMLCGVFLIGGLCNFGRVYLMSISGQRMTQALRKQVYGAILKQETAWFGRTSTGELVNRLSADTQLVGRNLSQNVSDGLRSLFMVGAGTGMMFYMSPSLALIGLCVVPPVSMLAAIYGRFVRGITRELQDSLAETSELAEEKISNIKTVKAFSKEPKECESYAKRIENLLNLAYKESLAVGSFYGLTGLAGNTIIILVLYYGGGMVATEQLTVGNLTSFLLYAAYVGISIGGLSSFYTELNKGMGAATRLWEIIDREPKIPVTGGLIPKEKPNGEIILEKVHFSYNDAPLIRGLDLHLRPGKSVALVGRSGCGKSTIASLILRLYDPDKGRVLLDGVDIRELDPMWLRSLIGYVGQEPVLFSGTVKENILYGALDENEEVQNEKDEPAWMVAARTAHLHELVTGTRQGWDREVGAGGSQLSGGQKQRVAIARAIVKNPKILILDEATSALDTYSEYLVDKALKEISKSRTVLTIAHRLSTIQSADEVAVLENGVVVETGPYAELVAKPDGLFRELITHQTFTAKSRDKKDMQKSVLRRDFATRTATVSDSKCLSSPWGEIQIGKETLTDHVFGEVESWADKPSVTCGSSGRSYDYGMMRMMVERCANALVGHLKMKPGEKIGLILPNIPEFVVLIHGAMKAGLVVTFANPLYTAVEIQRQFNDCGVKAIATIEMFMPVAQEVSKSLKDYKGTIWVGGEDDKAKGIHGLRSLLMADHKADLPTLNCDDVCLIPYSSGTTGMPKGVMLTHKNLVCNLKQVKCPEMMKDGVVKGKDEVVLTVPPFFHIYGFNGILNYNLSLGYHIVTMPKFTPDDYIKCLVEHEPTTLFVVPSLLAFLATHPLVKKSHLQSIKIIMVGAAPTTDAMMEKFLLKCEKTKDDIRLLQGYGMTESSPVTLLTPFDYPYGKVGSVGQLVPSTQAKIVSLTDGEMLGSHKSGELWLKGPQVMKGYWNNEAATKETVDSDGWLHTGDVAYYDEDYYFYIVDRTKELIKVKGNQVSPTEVENVILERPEVADVAVVGIPDPLAGELPKAFVVLKSNHKLTEKEVYDTVAQKLTKYKHLEGGVVFMDAIPRNAAGKIMRNELKVLGGKSKH

Uniprot

A0A232F002

Pubmed

28648823

EMBL

NNAY01001444 OXU23955.1

Proteomes

UP000215335

Pfam

PF00501   AMP-binding        + More
PF00005   ABC_tran
PF00664   ABC_membrane
PF13193   AMP-binding_C

Interpro

IPR003593   AAA+_ATPase        + More
IPR025110   AMP-bd_C
IPR036640   ABC1_TM_sf
IPR000873   AMP-dep_Synth/Lig
IPR027417   P-loop_NTPase
IPR011527   ABC1_TM_dom
IPR039421   Type_I_exporter
IPR017871   ABC_transporter_CS
IPR003439   ABC_transporter-like
IPR020845   AMP-binding_CS

SUPFAM

SSF52540 SSF52540 + More
SSF90123 SSF90123

Gene 3D

1.20.1560.10

ProteinModelPortal

A0A232F002

PDB

4AYX E-value=8.27415e-168, Score=1520

KEGG

101742503 K05657 ATP-binding cassette, subfamily B (MDR/TAP), member 10 | (RefSeq) ATP-binding cassette sub-fa

PATHWAY

02010 ABC transporters - Bombyx mori (domestic silkworm)

GO

GO:0016021 GO:0005524 GO:0042626 GO:0003824 GO:0008152 GO:0006810 GO:0016887 GO:0005622 GO:0055085

PANTHER

PTHR24221

Length:

1191

Number of predicted TMHs:

5

Exp number of AAs in TMHs:

113.690840000001

Exp number, first 60 AAs:

4.69361

Total prob of N-in:

0.98014

inside

1 - 61

TMhelix

62 - 84

outside

85 - 98

TMhelix

99 - 121

inside

122 - 199

TMhelix

200 - 222

outside

223 - 281

TMhelix

282 - 304

inside

305 - 316

TMhelix

317 - 339

outside

340 - 1191

Pi

238.786696

Theta

176.408673

Tajima's D

0.990925

CLR

0.222066

CSRT

0.655617219139043

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics