Gene

KWMTBOMO11004

Pre Gene Modal

BGIBMGA008523

Annotation

PREDICTED:_Golgi_resident_protein_GCP60_[Papilio_machaon]

Location

Bomo_Chr18(+):9235793-9243906      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.254 Nuclear   Reliability : 2.386

CDS

ATGGCTAGTAAAATCGATAGTAATATAAAAGTTAATCCAGAAAAAGTATTGCTAGAGACAGATCAAGGCATTGTCGACAGTGAAGAAAGGAAGTGGGGAATGCCCCTAAAAGAAGTATATAAACATGGAGTCTTTTTCTATAAAGAAAAGGAAGGAAAAGCAATACATCTTAGCTATGAAGACAGGCTGAAACTGGTCGCCTATACACAACAAACCGCGCACGGTCCATTTGATCCCAATTCTGTACCACCTCTGGGTGTCTTGGATGTGATAGGGAGAGATAGGCATGCAGCTTGGCAAGCATTAGGTCAAATGTCTCAAATACAGGCTATGGCTGGCTTTGTCCATGCTTTAGACAGACTTTGTCCATTGTTCAAGCCATATTTGGAAGCTATACAGAAGGACAAGGAACAAAAGATGCAACAAGAGTTGAAACGAGAAGAAGAAGAAAGATCTCGAATCGAACTTCAAAATAGAGTCATGCTAGAGAAACAGAAGCAGCAAAGTAATAAAATAACGGAAGAACAACAAGTGCAAAGGATAAAGGATGCCTTAAACGCTCAAACGTATGATCAGTTCCTACAATATGCCCAACAACAGTTTCCTGGTAATTTCGACCAGCAAGCCATTTTGATTAGGCAACTACAAGATCAACACTATCAACAATATATAAAGCAGCTAGCTGTAGATCAGAGATTAGCAAATTCTACCATACTCAACGAAAGTGATGACACAGAGAGTGAAAATGTTAAAAAAGAGGAAATGGTGAAAGACTGCAACTTAAACGAAACTGATATTGTCGCTGTTGTGGACAACAAGTCAATGCAGACTTTAGAAAAAACGGATCCAAACGATTACACCGAAGTCTATAAAGAAGACGAATCTGAAGATGATGGTCTACCAGCGGTAGAGGATGCGCGCATGTGGACTCGTGATGAAATAGTTCAATTCAAAGACTCTGCTCGGTCAAGTGGAGGAATGTTGACTGTGGGACACGGAGAAACTGTAACTATAAGGGTTCCTACGCATCATCGCGCCAGGTGTATCTGTTGGGAGTTTGCCACGGACAAATACGATATTGGTTTCGGTCTTTATTTTGAATGGAGCAAATCTCCGACTTCAGAAGTGACGGTTCACGTGTCAGAAAGCGACGAAGAAGATGAAGCAGAAGAGGAAGTCTACGGTGAAGAAGGTAATGTTAATTTAATACAATAA

Protein

MASKIDSNIKVNPEKVLLETDQGIVDSEERKWGMPLKEVYKHGVFFYKEKEGKAIHLSYEDRLKLVAYTQQTAHGPFDPNSVPPLGVLDVIGRDRHAAWQALGQMSQIQAMAGFVHALDRLCPLFKPYLEAIQKDKEQKMQQELKREEEERSRIELQNRVMLEKQKQQSNKITEEQQVQRIKDALNAQTYDQFLQYAQQQFPGNFDQQAILIRQLQDQHYQQYIKQLAVDQRLANSTILNESDDTESENVKKEEMVKDCNLNETDIVAVVDNKSMQTLEKTDPNDYTEVYKEDESEDDGLPAVEDARMWTRDEIVQFKDSARSSGGMLTVGHGETVTIRVPTHHRARCICWEFATDKYDIGFGLYFEWSKSPTSEVTVHVSESDEEDEAEEEVYGEEGNVNLIQ

Uniprot

H9JG76   A0A212EU61   A0A2A4J7J7   A0A194RQ69   A0A2H1VIE7   A0A194PHH0   + More
A0A0L7L173   Q176M9   A0A1Q3G2K6   A0A1Q3G2L6   A0A1Q3G2K8   Q176N0   U5EHR2   A0A2M4BM16   A0A2M4BM07   A0A084VAL6   A0A1L8DVH9   A0A2M4BM34   A0A182FKV7   A0A2M3ZGF3   W5J958   A0A182JB25   A0A2M4A6W6   A0A182JYW9   A0A182GNL9   A0A182YHJ2   A0A182PT13   A0A182LSN5   A0A182RCK5   A0A182UX16   A0A182N521   A0A182XE53   Q7QBG2   A0A182HJ71   A0A182TGN9   A0A154PNZ4   A0A182VWP0   A0A182Q470   A0A0N0U4X8   A0A1I8N6J8   A0A0L7QNH2   A0A1A9USV7   A0A310SJR7   A0A1B0BB67   A0A1B0FI54   A0A1A9XCU9   A0A1A9WDQ2   A0A1I8PBP4   E2A2D9   A0A2J7RMF6   A0A3L8D9J8   A0A151WSY9   A0A2A3EQM8   W8C0C0   A0A067QQ49   A0A2J7RME7   B4H4Q4   A0A195DQJ4   W8CAA3   A0A2J7RMG3   A0A088AP76   A0A0M4EUS6   Q29HY1   A0A0L0CNB4   A0A158NAN7   E0VM10   A0A026WIW5   B4PZD3   A0A0J7LAN4   B4I7A6   B4R7S7   A0A3B0K059   A0A195CJJ0   B4NQ67   B3MQN1   B4MAR4   Q9VWD5   F4W6W6   E9IG78   T1PAJ9   A0A195EWM8   A0A1B6G9K7   A0A151I0J7   A0A0K8V935   A0A1W4VVA3   B3NVT0   A0A034WX37   A0A2P8Z2D5   B4JJH7   A0A0P5QYR1   A0A0P5HZ30   A0A224XN97   A0A0P5E1R4   A0A0P5VL92   D2A2W6   A0A182LCD9   K7INQ9   A0A232EVF1   A0A0N8CTQ2  

Pubmed

19121390    22118469    26354079    26227816    17510324    24438588    + More
20920257    23761445    26483478    25244985    12364791    14747013    17210077    25315136    20798317    30249741    24495485    24845553    17994087    15632085    26108605    21347285    20566863    24508170    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    21719571    21282665    25348373    29403074    18362917    19820115    20966253    20075255    28648823   

EMBL

BABH01002129    BABH01002130    AGBW02012451    OWR45042.1    NWSH01002874    PCG67392.1    + More
KQ459765    KPJ20013.1    ODYU01002540    SOQ40172.1    KQ459604    KPI92498.1    JTDY01003621    KOB69248.1    CH477385    EAT42118.1    GFDL01001012    JAV34033.1    GFDL01001003    JAV34042.1    GFDL01001013    JAV34032.1    EAT42117.1    GANO01002914    JAB56957.1    GGFJ01004976    MBW54117.1    GGFJ01004975    MBW54116.1    ATLV01004131    KE524190    KFB35010.1    GFDF01003646    JAV10438.1    GGFJ01004974    MBW54115.1    GGFM01006875    MBW27626.1    ADMH02002026    ETN59913.1    GGFK01003198    MBW36519.1    JXUM01014662    KQ560409    KXJ82561.1    AXCM01009418    AAAB01008879    EAA08384.4    APCN01002128    KQ435007    KZC13457.1    AXCN02000175    KQ435796    KOX73528.1    KQ414860    KOC60036.1    KQ759770    OAD62944.1    JXJN01011310    CCAG010004713    GL436037    EFN72402.1    NEVH01002556    PNF42011.1    QOIP01000011    RLU17157.1    KQ982767    KYQ50964.1    KZ288193    PBC34038.1    GAMC01001458    JAC05098.1    KK853149    KDR10690.1    PNF42013.1    CH479209    EDW32666.1    KQ980612    KYN15175.1    GAMC01001459    JAC05097.1    PNF42012.1    CP012528    ALC49564.1    CH379064    EAL31626.2    JRES01000256    KNC32909.1    ADTU01010401    ADTU01010402    DS235286    EEB14416.1    KK107182    EZA55928.1    CM000162    EDX02089.1    LBMM01000031    KMR05271.1    CH480823    EDW56204.1    CM000366    EDX18410.1    OUUW01000011    SPP86713.1    KQ977642    KYN00883.1    CH964291    EDW86292.1    CH902621    EDV44657.1    CH940655    EDW66323.1    AE014298    AY051848    AAF49009.1    AAK93272.1    GL887762    EGI70079.1    GL762921    EFZ20421.1    KA645724    AFP60353.1    KQ981954    KYN32289.1    GECZ01010678    JAS59091.1    KQ976612    KYM79301.1    GDHF01026255    GDHF01023799    GDHF01016927    JAI26059.1    JAI28515.1    JAI35387.1    CH954180    EDV46745.1    GAKP01000187    JAC58765.1    PYGN01000229    PSN50640.1    CH916370    EDV99729.1    GDIQ01108346    JAL43380.1    GDIQ01226712    JAK25013.1    GFTR01006516    JAW09910.1    GDIP01149278    LRGB01002190    JAJ74124.1    KZS08583.1    GDIP01099832    JAM03883.1    KQ971338    EFA02230.1    NNAY01002006    OXU22332.1    GDIP01099831    JAM03884.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053240    UP000053268    UP000037510    + More
UP000008820    UP000030765    UP000069272    UP000000673    UP000075880    UP000075881    UP000069940    UP000249989    UP000076408    UP000075885    UP000075883    UP000075900    UP000075903    UP000075884    UP000076407    UP000007062    UP000075840    UP000075902    UP000076502    UP000075920    UP000075886    UP000053105    UP000095301    UP000053825    UP000078200    UP000092460    UP000092444    UP000092443    UP000091820    UP000095300    UP000000311    UP000235965    UP000279307    UP000075809    UP000242457    UP000027135    UP000008744    UP000078492    UP000005203    UP000092553    UP000001819    UP000037069    UP000005205    UP000009046    UP000053097    UP000002282    UP000036403    UP000001292    UP000000304    UP000268350    UP000078542    UP000007798    UP000007801    UP000008792    UP000000803    UP000007755    UP000078541    UP000078540    UP000192221    UP000008711    UP000245037    UP000001070    UP000076858    UP000007266    UP000075882    UP000002358    UP000215335   

PRIDE

H9JG76    Q9VWD5   

Pfam

PF00664   ABC_membrane        + More
PF00887   ACBP
PF13897   GOLD_2
PF00005   ABC_tran

Interpro

IPR035984   Acyl-CoA-binding_sf        + More
IPR009038   GOLD_dom       
IPR003593   AAA+_ATPase       
IPR014352   FERM/acyl-CoA-bd_prot_sf       
IPR027417   P-loop_NTPase       
IPR030260   ABCB10-like       
IPR011527   ABC1_TM_dom       
IPR000582   Acyl-CoA-binding_protein       
IPR036640   ABC1_TM_sf       
IPR036598   GOLD_dom_sf       
IPR039421   Type_I_exporter       
IPR017871   ABC_transporter_CS       
IPR003439   ABC_transporter-like       

SUPFAM

SSF101576   SSF101576        + More
SSF47027   SSF47027       
SSF52540   SSF52540       
SSF90123   SSF90123       

Gene 3D

1.20.1560.10     1.20.80.10    

ProteinModelPortal

H9JG76   A0A212EU61   A0A2A4J7J7   A0A194RQ69   A0A2H1VIE7   A0A194PHH0   + More
A0A0L7L173   Q176M9   A0A1Q3G2K6   A0A1Q3G2L6   A0A1Q3G2K8   Q176N0   U5EHR2   A0A2M4BM16   A0A2M4BM07   A0A084VAL6   A0A1L8DVH9   A0A2M4BM34   A0A182FKV7   A0A2M3ZGF3   W5J958   A0A182JB25   A0A2M4A6W6   A0A182JYW9   A0A182GNL9   A0A182YHJ2   A0A182PT13   A0A182LSN5   A0A182RCK5   A0A182UX16   A0A182N521   A0A182XE53   Q7QBG2   A0A182HJ71   A0A182TGN9   A0A154PNZ4   A0A182VWP0   A0A182Q470   A0A0N0U4X8   A0A1I8N6J8   A0A0L7QNH2   A0A1A9USV7   A0A310SJR7   A0A1B0BB67   A0A1B0FI54   A0A1A9XCU9   A0A1A9WDQ2   A0A1I8PBP4   E2A2D9   A0A2J7RMF6   A0A3L8D9J8   A0A151WSY9   A0A2A3EQM8   W8C0C0   A0A067QQ49   A0A2J7RME7   B4H4Q4   A0A195DQJ4   W8CAA3   A0A2J7RMG3   A0A088AP76   A0A0M4EUS6   Q29HY1   A0A0L0CNB4   A0A158NAN7   E0VM10   A0A026WIW5   B4PZD3   A0A0J7LAN4   B4I7A6   B4R7S7   A0A3B0K059   A0A195CJJ0   B4NQ67   B3MQN1   B4MAR4   Q9VWD5   F4W6W6   E9IG78   T1PAJ9   A0A195EWM8   A0A1B6G9K7   A0A151I0J7   A0A0K8V935   A0A1W4VVA3   B3NVT0   A0A034WX37   A0A2P8Z2D5   B4JJH7   A0A0P5QYR1   A0A0P5HZ30   A0A224XN97   A0A0P5E1R4   A0A0P5VL92   D2A2W6   A0A182LCD9   K7INQ9   A0A232EVF1   A0A0N8CTQ2  

PDB

5LZ1     E-value=1.79516e-16,     Score=210

KEGG

101742352    no KO assigned | (RefSeq) Golgi resident protein GCP60

GO

GO:0016021   GO:0005524   GO:0042626   GO:0000062   GO:0000139   GO:0006810   GO:0005515   GO:0006357   GO:0051603   GO:0051028   GO:0005622   GO:0003824  

PANTHER

PTHR24221:SF446   PTHR24221  

Length:

404

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00807999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02093

outside

1  -  404

 

 

Pi

264.17486

Theta

184.780942

Tajima's D

1.183744

CLR

0.034046

CSRT

0.702964851757412

Interpretation

Uncertain