Gene

KWMTBOMO11001

Pre Gene Modal

BGIBMGA008522

Annotation

PREDICTED:_beta-1?4-N-acetylgalactosaminyltransferase_bre-4-like_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr18(+):9215353-9217202      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 3.592

CDS

ATGCGCTGTTCTTACAGGAAAAAAATAATATATGGAGTTATAACAATACTAATTTTTATAATATTTTCTCATCCTGGTTTGTATGGTAGAAGTTCATATGAATTCATTGAAAAACACAATATACTCAAATATTTACACGAAGAAGTTAATGTGAACTTAACTAGCAATGCATTTACAAATTGTGATTATCACGATATTATAAATGACGAAACAACTTTATCACCAAACTTAATAGAAGGAGATTTAGTAGAGGGTCATGGCATCAGAGACGGGGGTGAATATATACCACAAGACTGCAGACCAAAATTTAGTACAGCAATCATCGTACCTTATCGTGACAGGGCAGAACAACTTCGTGGGTTCCTGGTATACATGCACACGTTCTTTCGCCGCCAACGGATACACTATCGAATATTCATAATAGAACAAGTAGATTCCCGTCCATTCAACAGAGCAAAGCTGTTGAATATTGGAGCTGCGGCAGCAATTAATGCAGGGTTCCCTTGCATTGTTCTTCATGATGTTGACCTATTACCACTGAGGCCATCCAATCTATATGCGTGTACAAAACAACCAAGGCACATGTCCTCTAGCATCAACAAATTTAGATTTGTGCTTCCATATTTGACTCTTTTTGGTGGGGTGATATCGATAAGAACTAGTCAATACAAAATGGTAAACGGAATGAGTAACGAGTACTTTGGTTGGGGTGCTGAGGATGATGATTTATACAGCCGCCTTCGAGCTTGTAATTTTAAAATTTGCAGGTTTGGACCTGAGATTAGTCAGTACCATATGTTTAGCCACAAGTTACAAAGGAAAGGAAAATTAAGAAGTGATCTGTTAAGTTTTGCAAGAAAAAGGATGGCAGCAGATGGATTAAGTTCTTTACACTATTTAGAAGTGGCCACAGTATTGCATCCATTATTTACACATATCATGGTTGATTTGTAA

Protein

MRCSYRKKIIYGVITILIFIIFSHPGLYGRSSYEFIEKHNILKYLHEEVNVNLTSNAFTNCDYHDIINDETTLSPNLIEGDLVEGHGIRDGGEYIPQDCRPKFSTAIIVPYRDRAEQLRGFLVYMHTFFRRQRIHYRIFIIEQVDSRPFNRAKLLNIGAAAAINAGFPCIVLHDVDLLPLRPSNLYACTKQPRHMSSSINKFRFVLPYLTLFGGVISIRTSQYKMVNGMSNEYFGWGAEDDDLYSRLRACNFKICRFGPEISQYHMFSHKLQRKGKLRSDLLSFARKRMAADGLSSLHYLEVATVLHPLFTHIMVDL

Uniprot

A0A3S2N9L2   A0A2H1VH51   A0A2A4JVV5   A0A0L7KYX6   A0A194RV20   A0A194PGI4   + More
A0A212FGA2   B4M066   A0A0A1XME8   A0A034WD93   B4KDT2   A0A0K8VID4   A0A0L0BY63   W8BYL7   A0A084VY14   A0A1S4GXT7   A0A182V8C6   A0A182TN22   A0A182XL64   A0A182L0W7   A0A182ICG1   A7UUK4   A0A182PCQ2   Q9VAQ8   B4NF99   A0A182K7C5   A0A182MZ00   A0A336KDM0   A0A1I8PJA1   A0A182LXD4   A0A1I8NAT3   A0A182JJ51   A0A2M3ZAW0   A0A182W6P3   A0A1Y9HFA8   A0A3B0KS36   A0A1A9X1U6   A0A182QJT0   B4QZF2   B4PQ88   A0A1A9YBU5   W5J662   A0A182Y3F8   B4JTB7   A0A1A9US67   A0A1A9Z6W6   B4HZ44   B3P5M7   A0A2M4BVI2   D3TQ83   A0A1W4VUD7   B3LXP0   Q298Z2   Q0IF91   A0A182H5W3   A0A1B0B842   B4G4W7   Q86NU9   A0A182F4B7   A0A1L8E277   A0A1J1HJA3   A0A0M4EM62   A0A1B0DIM3   S4PX51   V9IK85   A0A0C9QYX9   D7EJY6   E2AL20   A0A026WQH2   A0A1Y1LE70   A0A1Y1LFS1   A0A2P8XTE0   A0A2A3EC08   K7IPW5   A0A2R7WYP8   A0A2A4J6Q6   A0A0L7RBH6   N6UAD3   A0A232EXA5   A0A154PNC6   A0A195C0X0   A0A194QAT2   A0A0J7KTA8   A0A151JYW6   A0A151J0C9   F4WPP6   A0A158NWK2   A0A195B4I6   A0A3S2NUE5   A0A0N1IQ07   E2BHC9   A0A151X007   E9I892   A0A0N0U407   A0A212FF74   A0A146LJM3   A0A0A9W4Z7   A0A2J7PXX7  

Pubmed

26227816    26354079    22118469    17994087    25830018    25348373    + More
26108605    24495485    24438588    12364791    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    17550304    20920257    23761445    25244985    20353571    15632085    17510324    26483478    23622113    18362917    19820115    20798317    24508170    30249741    28004739    29403074    20075255    23537049    28648823    21719571    21347285    21282665    26823975    25401762   

EMBL

RSAL01000170    RVE45184.1    ODYU01002540    SOQ40169.1    NWSH01000474    PCG76155.1    + More
JTDY01004223    KOB68432.1    KQ459765    KPJ20016.1    KQ459604    KPI92501.1    AGBW02008690    OWR52765.1    CH940650    EDW68316.1    GBXI01001788    JAD12504.1    GAKP01007229    JAC51723.1    CH933806    EDW14929.1    GDHF01014029    JAI38285.1    JRES01001250    KNC24224.1    GAMC01000095    JAC06461.1    ATLV01018243    KE525226    KFB42858.1    AAAB01008964    APCN01000798    EDO63572.1    AE014297    BT011457    AAF56843.1    AAR99115.1    CH964251    EDW82966.1    UFQS01000295    UFQT01000295    SSX02567.1    SSX22941.1    AXCM01009415    GGFM01004837    MBW25588.1    OUUW01000013    SPP88061.1    AXCN02000789    CM000364    EDX14790.1    CM000160    EDW98357.1    ADMH02002138    ETN58350.1    CH916373    EDV95007.1    CH480819    EDW53301.1    CH954182    EDV53277.1    GGFJ01007873    MBW57014.1    CCAG010012178    EZ423585    ADD19861.1    CH902617    EDV43934.1    CM000070    EAL27812.1    CH477389    EAT41995.1    JXUM01112743    KQ565620    KXJ70838.1    JXJN01009829    CH479179    EDW24633.1    BT003627    AAO39631.1    GFDF01001345    JAV12739.1    CVRI01000001    CRK86550.1    CP012526    ALC45526.1    AJVK01006151    AJVK01006152    GAIX01005648    JAA86912.1    JR051283    AEY61470.1    GBYB01000930    JAG70697.1    KQ972213    EFA12917.2    GL440429    EFN65873.1    KK107138    QOIP01000002    EZA57936.1    RLU25308.1    GEZM01060218    GEZM01060214    JAV71188.1    GEZM01060219    GEZM01060216    JAV71190.1    PYGN01001379    PSN35273.1    KZ288291    PBC29220.1    KK856012    PTY24632.1    NWSH01002778    PCG67549.1    KQ414617    KOC68193.1    APGK01032722    KB740848    KB632411    ENN78690.1    ERL95245.1    NNAY01001758    OXU23011.1    KQ434977    KZC12818.1    KQ978379    KYM94529.1    KQ459232    KPJ02539.1    LBMM01003485    KMQ93479.1    KQ981456    KYN41570.1    KQ980638    KYN14921.1    GL888252    EGI63830.1    ADTU01028108    KQ976603    KYM79413.1    RSAL01000075    RVE48908.1    KQ460044    KPJ18304.1    GL448287    EFN84898.1    KQ982632    KYQ53369.1    GL761538    EFZ23158.1    KQ435851    KOX70844.1    AGBW02008849    OWR52382.1    GDHC01010421    JAQ08208.1    GBHO01043669    JAF99934.1    NEVH01020852    PNF21198.1   

Proteomes

UP000283053    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000008792    UP000009192    UP000037069    UP000030765    UP000075903    UP000075902    UP000076407    UP000075882    UP000075840    UP000007062    UP000075885    UP000000803    UP000007798    UP000075881    UP000075884    UP000095300    UP000075883    UP000095301    UP000075880    UP000075920    UP000075900    UP000268350    UP000091820    UP000075886    UP000000304    UP000002282    UP000092443    UP000000673    UP000076408    UP000001070    UP000078200    UP000092445    UP000001292    UP000008711    UP000092444    UP000192221    UP000007801    UP000001819    UP000008820    UP000069940    UP000249989    UP000092460    UP000008744    UP000069272    UP000183832    UP000092553    UP000092462    UP000007266    UP000000311    UP000053097    UP000279307    UP000245037    UP000242457    UP000002358    UP000053825    UP000019118    UP000030742    UP000215335    UP000076502    UP000078542    UP000036403    UP000078541    UP000078492    UP000007755    UP000005205    UP000078540    UP000008237    UP000075809    UP000053105    UP000235965   

PRIDE

Q9VAQ8    Q86NU9   

Pfam

PF13733   Glyco_transf_7N        + More
PF02709   Glyco_transf_7C
PF00400   WD40
PF12894   ANAPC4_WD40

Interpro

IPR003859   Galactosyl_T        + More
IPR029044   Nucleotide-diphossugar_trans       
IPR027995   Galactosyl_T_N       
IPR027791   Galactosyl_T_C       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR024977   Apc4_WD40_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF53448   SSF53448        + More
SSF50978   SSF50978       

Gene 3D

3.90.550.10     2.130.10.10    

ProteinModelPortal

A0A3S2N9L2   A0A2H1VH51   A0A2A4JVV5   A0A0L7KYX6   A0A194RV20   A0A194PGI4   + More
A0A212FGA2   B4M066   A0A0A1XME8   A0A034WD93   B4KDT2   A0A0K8VID4   A0A0L0BY63   W8BYL7   A0A084VY14   A0A1S4GXT7   A0A182V8C6   A0A182TN22   A0A182XL64   A0A182L0W7   A0A182ICG1   A7UUK4   A0A182PCQ2   Q9VAQ8   B4NF99   A0A182K7C5   A0A182MZ00   A0A336KDM0   A0A1I8PJA1   A0A182LXD4   A0A1I8NAT3   A0A182JJ51   A0A2M3ZAW0   A0A182W6P3   A0A1Y9HFA8   A0A3B0KS36   A0A1A9X1U6   A0A182QJT0   B4QZF2   B4PQ88   A0A1A9YBU5   W5J662   A0A182Y3F8   B4JTB7   A0A1A9US67   A0A1A9Z6W6   B4HZ44   B3P5M7   A0A2M4BVI2   D3TQ83   A0A1W4VUD7   B3LXP0   Q298Z2   Q0IF91   A0A182H5W3   A0A1B0B842   B4G4W7   Q86NU9   A0A182F4B7   A0A1L8E277   A0A1J1HJA3   A0A0M4EM62   A0A1B0DIM3   S4PX51   V9IK85   A0A0C9QYX9   D7EJY6   E2AL20   A0A026WQH2   A0A1Y1LE70   A0A1Y1LFS1   A0A2P8XTE0   A0A2A3EC08   K7IPW5   A0A2R7WYP8   A0A2A4J6Q6   A0A0L7RBH6   N6UAD3   A0A232EXA5   A0A154PNC6   A0A195C0X0   A0A194QAT2   A0A0J7KTA8   A0A151JYW6   A0A151J0C9   F4WPP6   A0A158NWK2   A0A195B4I6   A0A3S2NUE5   A0A0N1IQ07   E2BHC9   A0A151X007   E9I892   A0A0N0U407   A0A212FF74   A0A146LJM3   A0A0A9W4Z7   A0A2J7PXX7  

PDB

1O0R     E-value=1.41022e-44,     Score=451

KEGG

101742217    no KO assigned | (RefSeq) beta-1,4-N-acetylgalactosaminyltransferase bre-4-like

GO

GO:0016021   GO:0005975   GO:0016757   GO:0033842   GO:0005794   GO:0006044   GO:0006688   GO:0033207   GO:0008376   GO:0009247   GO:0046975   GO:0005515   GO:0006357   GO:0051603   GO:0051028   GO:0005622   GO:0006810   GO:0003824  

PANTHER

PTHR19300  

SignalP

Position:   1 - 29,         Likelihood:  0.551767

 

 

Length:

317

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

30.75686

Exp number, first 60 AAs:

19.90066

Total prob of N-in:

0.92975

POSSIBLE N-term signal

sequence

inside

1  -  8

TMhelix

9  -  28

outside

29  -  317

 

 

Pi

74.23478

Theta

143.068073

Tajima's D

-0.761336

CLR

1.362049

CSRT

0.182690865456727

Interpretation

Uncertain