Silkworm Genome Informatics Database

Gene

KWMTBOMO10990

Pre Gene Modal

BGIBMGA008330

Annotation

PREDICTED:_proto-oncogene_c-Fos_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr18(-):8963609-9028400 View in EpiBrowser

Transcription factor

TF_bZIP

Location in the cell

Nuclear Reliability : 4.695

CDS

ATGAGCTCTACTATACCGACAATTAAATGTGAGGATACATCGCCATCGCCGGTTGCTTTAGGATCTGACGGAGAAAGTGGAACGTACAATTTGAGTGTTAATGTGAATCTAAGTGCTGCTATGATAAACATGCTGACCGCCGAGGGAACAAATACTACGCTTCGTACGCCGGAGATTGTAAACGATGTCATCACCATGACAAACCCCCTGGACCAGTATAATTACGAAAAGAATTCCAGTTTCAAGAACGGAAGCGGAAATGACTCCAACTCTTCGATGTCTAATGGCTCGTCGGCCACATCACCGTCTTCAAGCACTCCGCCCAGCATACAGAAGACGTGCTCGGAACTTATCAAGGCTGGCCTGAAACTGTCCATTGAATCGAAACGCAAAATGTCCGGTAGCGATACAGACGTCAGCGTGAAACGACTCAAAAAGGAAGAAAGCGATGAAGATTACGATAGCAGTCACACGCAACAAGCCAAAAATGAAGGGCTAACACCGGAAGACGAAGAACGGAGGCGGCGTAGAAGAGAACGGAATAAAATCGCGGCTACAAAGTGCAGAATGAAGAAACGGGAGAGAACCGTCAACTTGGTCACGGAGAGCGAGGTCCTCGAAAACCAGAATATTGATCTCAAAGCACAACTGAAGGATTTGGAAGTTCAGAAGCGGCAGTTGATTGACATGCTGTCGCTGCACGCCGCATCGTGTGTCAAGAACAATTCAACAACGAGGCAATCGCCTACAATGCAGTACAACATGATTCGTTCTTACGATTCTCCATCAACATTCCCCTCTTCGTTTGAAGCACACTCGCCATACATCCGACCCGAGTCCGCGAACATACTCGCATCAAGTTACACTTGCGCTACGCCGATAGGTGATTCTTCGGTGGACACGATTTCATCGCTGGACTCTATTTACCCGGCGCAGCAGTTGATTGAACAAGAATACAACAGGCCCGACAGCGTCCTTAGCCTAACTCCAACCTCGGATCCCAATTTCGTGACCACAGACGGGTTCCTGCCCAAAGCCACGAACCTCCTCATTCCGATTGACGCAGAGCAGGAATACTACGATCCTGATGTGAATTATAACTTGGCGAGCAATCAACAGTGCCATACTTATCCCGGATCGGCTGCAGATGCACAGACTAAAATCAACAACGGCCTGAACGATGGGTGTCTCGTTTAG

Protein

MSSTIPTIKCEDTSPSPVALGSDGESGTYNLSVNVNLSAAMINMLTAEGTNTTLRTPEIVNDVITMTNPLDQYNYEKNSSFKNGSGNDSNSSMSNGSSATSPSSSTPPSIQKTCSELIKAGLKLSIESKRKMSGSDTDVSVKRLKKEESDEDYDSSHTQQAKNEGLTPEDEERRRRRRERNKIAATKCRMKKRERTVNLVTESEVLENQNIDLKAQLKDLEVQKRQLIDMLSLHAASCVKNNSTTRQSPTMQYNMIRSYDSPSTFPSSFEAHSPYIRPESANILASSYTCATPIGDSSVDTISSLDSIYPAQQLIEQEYNRPDSVLSLTPTSDPNFVTTDGFLPKATNLLIPIDAEQEYYDPDVNYNLASNQQCHTYPGSAADAQTKINNGLNDGCLV

Uniprot

A0A2H1WHX4 A0A2A4JT59 A0A3S2NG58 A0A1E1WQD8 A0A194RRK5 A0A194PN15 + More
A0A212F7U5 A0A0L7LJE8 A0A1Y1LUX1 A0A0N0U3S6

Pubmed

26354079 22118469 26227816 28004739

EMBL

ODYU01008718 SOQ52556.1 NWSH01000651 PCG75009.1 RSAL01000119 RVE46728.1 + More
GDQN01001860 JAT89194.1 KQ459765 KPJ20029.1 KQ459604 KPI92515.1 AGBW02009830 OWR49798.1 JTDY01000903 KOB75494.1 GEZM01047470 GEZM01047469 JAV76831.1 KQ435859 KOX70578.1

Proteomes

UP000218220 UP000283053 UP000053240 UP000053268 UP000007151 UP000037510 + More
UP000053105

Pfam

PF00170 bZIP_1

Interpro

IPR004827 bZIP + More
IPR000837 AP-1

ProteinModelPortal

A0A2H1WHX4 A0A2A4JT59 A0A3S2NG58 A0A1E1WQD8 A0A194RRK5 A0A194PN15 + More
A0A212F7U5 A0A0L7LJE8 A0A1Y1LUX1 A0A0N0U3S6

PDB

2WT7 E-value=0.0333619, Score=87

KEGG

101740596 K21406 activating transcription factor 3 | (RefSeq) proto-oncogene c-Fos

GO

GO:0003677 GO:0003700 GO:0006357 GO:0006355 GO:0043565 GO:0051603 GO:0051028 GO:0005622 GO:0006810 GO:0003824

PANTHER

PTHR23351

Length:

398

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00747

Exp number, first 60 AAs:

0.00747

Total prob of N-in:

0.01278

outside

1 - 398

Pi

238.421714

Theta

170.977891

Tajima's D

0.994868

CLR

0.211342

CSRT

0.656067196640168

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics